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Tamotsu Noguchi
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2010 – 2019
- 2019
- [c12]Yusheng Jiang, Tamotsu Noguchi, Nobuyuki Kanno, Yoshiko Yasumura, Takuya Suzuki, Yu Ishimaki, Hayato Yamana
:
A Privacy-Preserving Query System using Fully Homomorphic Encryption with Real-World Implementation for Medicine-Side Effect Search. iiWAS 2019: 63-72 - 2016
- [c11]Chun Fang, Tamotsu Noguchi, Hayato Yamana
, Fuzhen Sun:
Identifying Protein Short Linear Motifs by Position-Specific Scoring Matrix. ICSI (2) 2016: 206-214 - 2015
- [j15]Chun Fang, Tamotsu Noguchi, Hayato Yamana
:
Condensing position-specific scoring matrixs by the Kidera factors for ligand-binding site prediction. Int. J. Data Min. Bioinform. 12(1): 70-84 (2015) - 2014
- [j14]Chun Fang, Tamotsu Noguchi, Hayato Yamana
:
Simplified sequence-based method for ATP-binding prediction using contextual local evolutionary conservation. Algorithms Mol. Biol. 9: 7 (2014) - [j13]Chun Fang, Tamotsu Noguchi, Hayato Yamana
:
Analysis of evolutionary conservation patterns and their influence on identifying protein functional sites. J. Bioinform. Comput. Biol. 12(5) (2014) - 2013
- [j12]Chun Fang, Tamotsu Noguchi, Daisuke Tominaga, Hayato Yamana
:
MFSPSSMpred: identifying short disorder-to-order binding regions in disordered proteins based on contextual local evolutionary conservation. BMC Bioinform. 14: 300 (2013) - 2011
- [j11]Chie Motono, Junichi Nakata, Ryotaro Koike, Kana Shimizu, Matsuyuki Shirota, Takayuki Amemiya, Kentaro Tomii
, Nozomi Nagano
, Naofumi Sakaya, Kiyotaka Misoo, Miwa Sato, Akinori Kidera, Hidekazu Hiroaki
, Tsuyoshi Shirai
, Kengo Kinoshita, Tamotsu Noguchi, Motonori Ota:
SAHG, a comprehensive database of predicted structures of all human proteins. Nucleic Acids Res. 39(Database-Issue): 487-493 (2011) - 2010
- [j10]Toshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F. Aoki-Kinoshita
, Yasunori Yamamoto, Atsuko Yamaguchi
, Shuichi Kawashima
, Hong-Woo Chun, Jan Aerts
, Bruno Aranda, Lord H. Barboza, Raoul Jean Pierre Bonnal
, Richard M. Bruskiewich, Jan Christian Bryne, José María Fernández
, Akira Funahashi
, Paul M. K. Gordon, Naohisa Goto, Andreas Groscurth, Alex Gutteridge
, Richard C. G. Holland
, Yoshinobu Kano
, Edward A. Kawas, Arnaud Kerhornou
, Eri Kibukawa, Akira R. Kinjo
, Michael Kuhn, Hilmar Lapp
, Heikki Lehväslaiho
, Hiroyuki Nakamura, Yasukazu Nakamura
, Tatsuya Nishizawa, Chikashi Nobata, Tamotsu Noguchi, Thomas M. Oinn, Shinobu Okamoto, Stuart Owen, Evangelos Pafilis, Matthew R. Pocock, Pjotr Prins
, René Ranzinger, Florian Reisinger, Lukasz Salwínski
, Mark J. Schreiber, Martin Senger, Yasumasa Shigemoto, Daron M. Standley, Hideaki Sugawara, Toshiyuki Tashiro, Oswaldo Trelles
, Rutger A. Vos
, Mark D. Wilkinson
, William S. York, Christian M. Zmasek
, Kiyoshi Asai, Toshihisa Takagi:
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. J. Biomed. Semant. 1: 8 (2010) - [j9]Shuichi Hirose, Kana Shimizu, Tamotsu Noguchi:
POODLE-I: Disordered Region Prediction by Integrating POODLE Series and Structural Information Predictors Based on a Workflow Approach. Silico Biol. 10(3-4): 185-191 (2010)
2000 – 2009
- 2008
- [j8]Masakazu Sekijima, Junta Doi, Shinya Honda, Tamotsu Noguchi, Shigenori Shimizu, Yutaka Akiyama:
Free Energy Landscape Analysis System Based on Parallel Molecular Dynamics Simulation. Inf. Media Technol. 3(1): 201-210 (2008) - [c10]Junichi Ikeda, Kazuki Ohno, Sayaka Akioka, Masaya Orita, Yoichi Muraoka, Tamotsu Noguchi, Masakazu Sekijima:
Large-Scale Computing for Protein-Protein Binding Free Energy Calculation. PDPTA 2008: 771-775 - 2007
- [j7]Shuichi Hirose, Kana Shimizu, Satoru Kanai, Yutaka Kuroda, Tamotsu Noguchi:
POODLE-L: a two-level SVM prediction system for reliably predicting long disordered regions. Bioinform. 23(16): 2046-2053 (2007) - [j6]Kana Shimizu, Shuichi Hirose, Tamotsu Noguchi:
POODLE-S: web application for predicting protein disorder by using physicochemical features and reduced amino acid set of a position-specific scoring matrix. Bioinform. 23(17): 2337-2338 (2007) - [j5]Kana Shimizu, Yoichi Muraoka, Shuichi Hirose, Kentaro Tomii
, Tamotsu Noguchi:
Predicting mostly disordered proteins by using structure-unknown protein data. BMC Bioinform. 8 (2007) - [c9]Masakazu Sekijima, Junta Doi, Tamotsu Noguchi, Yutaka Akiyama, Shigenori Shimizu:
Optimization and evaluation of parallel molecular dynamics simulation on blue gene/L. Parallel and Distributed Computing and Networks 2007: 242-247 - [c8]Sachi Kimura, Masakazu Sekijima, Masami Takata, Tamotsu Noguchi, Kazuki Joe:
Development of Molecular Dynamics Simulation Based Flexible Docking System. PDPTA 2007: 739-745 - [c7]Masami Nakazawa, Masami Takata, Kiyonobu Yokota, Tamotsu Noguchi, Masakazu Sekijima, Kazuki Joe:
Development of an SVM based Prediction System for Metalbinding Sites in Protein. PDPTA 2007: 972-978 - 2005
- [c6]Kana Shimizu, Yoichi Muraoka, Shuichi Hirose, Tamotsu Noguchi:
Feature Selection Based on Physicochemical Properties of Redefined N-term Region and C-term Regions for Predicting Disorder. CIBCB 2005: 262-267 - 2003
- [j4]Tamotsu Noguchi, Yutaka Akiyama
:
PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB) in 2003. Nucleic Acids Res. 31(1): 492-493 (2003) - 2002
- [j3]Kentaro Onizuka, Tamotsu Noguchi, Yutaka Akiyama
, Hideo Matsuda
:
Using Data Compression for Multidimensional Distribution Analysis. IEEE Intell. Syst. 17(3): 48-54 (2002) - 2001
- [j2]Tamotsu Noguchi, Hideo Matsuda, Yutaka Akiyama
:
PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB). Nucleic Acids Res. 29(1): 219-220 (2001) - 2000
- [j1]Tamotsu Noguchi, Kentaro Onizuka, Makoto Ando, Hideo Matsuda
, Yutaka Akiyama
:
Quick selection of representative protein chain sets based on customizable requirements. Bioinform. 16(6): 520-526 (2000)
1990 – 1999
- 1999
- [c5]Yutaka Akiyama
, Kentaro Onizuka, Tamotsu Noguchi, Makoto Ando:
Biological- and Chemical- Parallel Applications on a PC Cluster. ISHPC 1999: 220-233 - [c4]Makoto Ando, Yutaka Akiyama, Kentaro Onizuka, Tamotsu Noguchi:
ESCAPE: Parallel Tree Search System for Conformational Analysis of Peptides. PDPTA 1999: 1537-1543 - 1997
- [c3]Yutaka Akiyama
, Kiyotaka Misoo, Yoshiharu Omura
, Hiroshi Matsumoto, Minoru Saito, Tamotsu Noguchi, Kentaro Onizuka, Makoto Ando:
Parallelization of Space Plasma Particle Simulation. ISHPC 1997: 281-292 - [c2]Kentaro Onizuka, Tamotsu Noguchi, Minoru Saito, Yutaka Akiyama
:
Parallel PDB Data Retriever "PDB Diving Booster". ISHPC 1997: 389-396 - [c1]Tamotsu Noguchi, Kentaro Onizuka, Yutaka Akiyama, Minoru Saito:
PDB-REPRDB: A Database of Representative Protein Chains in PDB (Protein Data Bank). ISMB 1997: 214-217
Coauthor Index
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