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Database - The Journal of Biological Databases and Curation, Volume 2016
Volume 2016, 2016
- Rayda Ben Ayed
, Hanen Ben Hassen
, Karim Ennouri
, Riadh Ben Marzoug, Ahmed Rebai
:
OGDD (Olive Genetic Diversity Database): a microsatellite markers' genotypes database of worldwide olive trees for cultivar identification and virgin olive oil traceability. - Xingyan Kuang, Andi Dhroso, Jing Ginger Han, Chi-Ren Shyu, Dmitry Korkin:
DOMMINO 2.0: integrating structurally resolved protein-, RNA-, and DNA-mediated macromolecular interactions. - Jens Kringelum, Sonny Kim Kjærulff, Søren Brunak
, Ole Lund
, Tudor I. Oprea
, Olivier Taboureau
:
ChemProt-3.0: a global chemical biology diseases mapping.
- Mayrolin García Morales, Barbara D. Denno, Douglass R. Miller, Gary L. Miller, Yair Ben-Dov, Nate B. Hardy:
ScaleNet: a literature-based model of scale insect biology and systematics. - Daniel R. Zerbino
, Nathan Johnson, Thomas Juettemann
, Daniel Sheppard
, Steven P. Wilder
, Ilias Lavidas
, Michael Nuhn
, Emily Perry
, Quentin Raffaillac-Desfosses, Daniel Sobral
, Damian Keefe, Stefan Gräf, Ikhlak Ahmed
, Rhoda Kinsella, Bethan Pritchard, Simon Brent, M. Ridwan Amode, Anne Parker, Stephen J. Trevanion
, Ewan Birney
, Ian Dunham
, Paul Flicek
:
Ensembl regulation resources. - Javier Herrero
, Matthieu Muffato
, Kathryn Beal, Stephen Fitzgerald, Leo Gordon, Miguel Pignatelli, Albert J. Vilella, Stephen M. J. Searle, M. Ridwan Amode, Simon Brent, William Spooner, Eugene Kulesha
, Andrew D. Yates
, Paul Flicek
:
Ensembl comparative genomics resources. - Lei Sheng, Haiyang Jiang, Hanwei Yan, Xiaoyu Li, Yongxiang Lin, Hui Ye, Beijiu Cheng:
MGFD: the maize gene families database.
- Petra ten Hoopen
, Clara Amid
, Pier Luigi Buttigieg
, Evangelos Pafilis, Panos Bravakos, Ana Cerdeño-Tárraga
, Richard Gibson, Tim Kahlke
, Aglaia Legaki, Kada Narayana Murthy, Gabriella Papastefanou, Emiliano Pereira
, Marc Rossello, Ana Luisa Toribio, Guy Cochrane
:
Value, but high costs in post-deposition data curation. - Martin Dugas
, Philipp Neuhaus
, Alexandra Meidt, Justin Doods, Michael Storck
, Philipp Bruland, Julian Varghese
:
Portal of medical data models: information infrastructure for medical research and healthcare. - Gabriele Dröge, Till Töpfer:
The Corvids Literature Database - 500 years of ornithological research from a crow's perspective. - Xiaowei Xie, Wenbin Ma
, Songyang Zhou, Zhenhua Luo, Junfeng Huang, Zhiming Dai, Yuanyan Xiong:
CCSI: a database providing chromatin-chromatin spatial interaction information. - Adam D. DePriest
, Michael V. Fiandalo
, Simon Schlanger, Frederike Heemers, James L. Mohler, Song Liu, Hannelore V. Heemers:
Regulators of Androgen Action Resource: a one-stop shop for the comprehensive study of androgen receptor action. - Subodh Kumar Mishra
, Amit Kumar:
NALDB: nucleic acid ligand database for small molecules targeting nucleic acid. - Evangelos Pafilis, Pier Luigi Buttigieg
, Barbra Ferrell
, Emiliano Pereira
, Julia Schnetzer, Christos Arvanitidis
, Lars Juhl Jensen
:
EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation. - Lionel Breuza
, Sylvain Poux
, Anne Estreicher
, Maria Livia Famiglietti, Michele Magrane
, Michael Tognolli
, Alan J. Bridge
, Delphine Baratin, Nicole Redaschi
:
The UniProtKB guide to the human proteome. - Miguel Pignatelli, Albert J. Vilella, Matthieu Muffato
, Leo Gordon, Simon White
, Paul Flicek
, Javier Herrero
:
ncRNA orthologies in the vertebrate lineage. - Wonjun Choi, Chan-Hun Choi, Young-Ran Kim, Seon-Jong Kim, Chang-Su Na, Hyunju Lee
:
HerDing: herb recommendation system to treat diseases using genes and chemicals. - Jiaxin Wu, Mengmeng Wu, Lianshuo Li, Zhuo Liu
, Wanwen Zeng
, Rui Jiang
:
dbWGFP: a database and web server of human whole-genome single nucleotide variants and their functional predictions. - Daniel K. Manter, Matthew Korsa, Caleb Tebbe, Jorge A. Delgado:
myPhyloDB: a local web server for the storage and analysis of metagenomic data. - Marie Jeanne Basse, Stéphane Betzi, Xavier Morelli
, Philippe Roche:
2P2Idb v2: update of a structural database dedicated to orthosteric modulation of protein-protein interactions. - Naresh Sahebrao Nagpure, Ajey Kumar Pathak, Rameshwar Pati
, Iliyas Rashid
, Jyoti Sharma, Shri Prakash Singh, Mahender Singh
, Uttam Kumar Sarkar, Basdeo Kushwaha, Ravindra Kumar
, S. Murali:
Fish Karyome version 2.1: a chromosome database of fishes and other aquatic organisms. - Chen Li
, Jeremy Nagel, Steve G. Androulakis, Jiangning Song
, Ashley M. Buckle
:
PolyQ 2.0: an improved version of PolyQ, a database of human polyglutamine proteins. - Yi-An Chen, Lokesh P. Tripathi
, Kenji Mizuguchi
:
An integrative data analysis platform for gene set analysis and knowledge discovery in a data warehouse framework. - G. Thomas Hayman, Stanley J. F. Laulederkind, Jennifer R. Smith, Shur-Jen Wang, Victoria Petri, Rajni Nigam, Marek Tutaj, Jeff de Pons, Melinda R. Dwinell, Mary Shimoyama:
The Disease Portals, disease-gene annotation and the RGD disease ontology at the Rat Genome Database. - Alexander Miguel Monzon
, Cristian Oscar Rohr, María Silvina Fornasari, Gustavo D. Parisi
:
CoDNaS 2.0: a comprehensive database of protein conformational diversity in the native state. - Alper Uzun
, Elizabeth W. Triche, Jessica Schuster, Andrew Thomas DeWan
, James Padbury:
dbPEC: a comprehensive literature-based database for preeclampsia related genes and phenotypes. - Eurie L. Hong, Cricket A. Sloan, Esther T. Chan
, Jean M. Davidson, Venkat S. Malladi
, J. Seth Strattan, Benjamin C. Hitz, Idan Gabdank, Aditi K. Narayanan, Marcus Ho
, Brian T. Lee
, Laurence D. Rowe
, Timothy R. Dreszer, Greg R. Roe, Nikhil R. Podduturi, Forrest Tanaka, Jason A. Hilton
, J. Michael Cherry
:
Principles of metadata organization at the ENCODE data coordination center. - Moritz Emanuel Beber
, Georgi Muskhelishvili, Marc-Thorsten Hütt:
Effect of database drift on network topology and enrichment analyses: a case study for RegulonDB. - Chee Sian Kuan, Su Mei Yew, Chai Ling Chan, Yue Fen Toh, Kok Wei Lee, Wei-Hien Cheong, Wai-Yan Yee, Chee-Choong Hoh, Soon-Joo Yap, Kee-Peng Ng:
DemaDb: an integrated dematiaceous fungal genomes database. - Graham L. Cromar, Anthony Zhao, Xuejian Xiong, Lakshmipuram S. Swapna, Noeleen Loughran, Hongyan Song, John Parkinson
:
PhyloPro2.0: a database for the dynamic exploration of phylogenetically conserved proteins and their domain architectures across the Eukarya. - Sook Jung, Taein Lee, Stephen P. Ficklin
, Jing Yu, Chun-Huai Cheng, Dorrie Main:
Chado use case: storing genomic, genetic and breeding data of Rosaceae and Gossypium crops in Chado. - Eli J. Draizen, Alexey K. Shaytan
, Leonardo Mariño-Ramírez
, Paul B. Talbert, David Landsman
, Anna R. Panchenko:
HistoneDB 2.0: a histone database with variants - an integrated resource to explore histones and their variants. - Sebastian Burgstaller-Muehlbacher
, Andra Waagmeester
, Elvira Mitraka, Julia Turner, Tim E. Putman
, Justin Leong, Chinmay Naik, Paul Pavlidis
, Lynn M. Schriml
, Benjamin M. Good, Andrew I. Su
:
Wikidata as a semantic framework for the Gene Wiki initiative. - Frédéric Rimet
, Philippe Chaumeil, François Keck
, Lenaïg Kermarrec, Valentin Vasselon
, Maria Kahlert
, Alain Franc, Agnès Bouchez
:
R-Syst::diatom: an open-access and curated barcode database for diatoms and freshwater monitoring. - Leonore Reiser
, Tanya Z. Berardini
, Donghui Li
, Robert J. Muller, Emily M. Strait, Qian Li, Yarik Mezheritsky, Andrey Vetushko, Eva Huala
:
Sustainable funding for biocuration: The Arabidopsis Information Resource (TAIR) as a case study of a subscription-based funding model. - Chen Li
, Steve G. Androulakis, Ashley M. Buckle
, Jiangning Song
:
KinetochoreDB: a comprehensive online resource for the kinetochore and its related proteins. - Stacia R. Engel
, Shuai Weng, Gail Binkley, Kelley M. Paskov, Giltae Song
, J. Michael Cherry
:
From one to many: expanding the Saccharomyces cerevisiae reference genome panel. - Vahan Simonyan, Konstantin Chumakov, Hayley Dingerdissen, William J. Faison, Scott Goldweber, Anton Golikov, Naila Gulzar
, Konstantinos Karagiannis
, Phuc Vinh Nguyen Lam, Thomas Maudru, Olesja Muravitskaja, Ekaterina Osipova, Yang Pan
, Alexey Pschenichnov, Alexandre Rostovtsev
, Luis V. Santana-Quintero, Krista Smith, Elaine E. Thompson
, Valery Tkachenko, John Torcivia-Rodriguez
, Alin Voskanian, Quan Wan, Jing Wang, Tsung-Jung Wu, Carolyn Wilson, Raja Mazumder
:
High-performance integrated virtual environment (HIVE): a robust infrastructure for next-generation sequence data analysis. - Yi Shen, Heming Yao, Ao Li, Minghui Wang:
CSCdb: a cancer stem cells portal for markers, related genes and functional information. - Amaia Sangrador-Vegas
, Alex L. Mitchell
, Hsin-Yu Chang
, Siew-Yit Yong
, Robert D. Finn
:
GO annotation in InterPro: why stability does not indicate accuracy in a sea of changing annotations. - Chih-Hsuan Wei
, Yifan Peng
, Robert Leaman, Allan Peter Davis, Carolyn J. Mattingly
, Jiao Li, Thomas C. Wiegers, Zhiyong Lu:
Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task. - Tiago Henrique Trojahn
, Nelson José Freitas da Silveira
, Arthur Henrique Cunha Volpato, Mayra Mataruco Mioto, Ana Carolina Buzzo Stefanini, Adil Bachir Fares, João Gustavo da Silva Castro Andrade, Carolina Masson, Rossana Verónica Mendoza López, Fabio Daumas Nunes
, Luiz Paulo Kowalski
, Patricia Severino
, Eloiza Helena Tajara:
HNdb: an integrated database of gene and protein information on head and neck squamous cell carcinoma. - Chung-Chi Huang, Zhiyong Lu:
Discovering biomedical semantic relations in PubMed queries for information retrieval and database curation. - Che-Wei Chang, Chai-Wei Chou, Darby Tien-Hao Chang:
CCProf: exploring conformational change profile of proteins. - Jun Xu, Yonghui Wu, Yaoyun Zhang, Jingqi Wang, Hee-Jin Lee, Hua Xu:
CD-REST: a system for extracting chemical-induced disease relation in literature. - Tim E. Putman
, Sebastian Burgstaller-Muehlbacher
, Andra Waagmeester
, Chunlei Wu, Andrew I. Su
, Benjamin M. Good:
Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes. - Lei Chen, Peng Ai, Jinfeng Zhang, Qiming Deng, Shiquan Wang, Shuangcheng Li, Jun Zhu, Ping Li, Ai-ping Zheng:
RSIADB, a collective resource for genome and transcriptome analyses in Rhizoctonia solani AG1 IA. - Meik Kunz, Chunguang Liang, Santosh Nilla, Alexander Cecil
, Thomas Dandekar:
The drug-minded protein interaction database (DrumPID) for efficient target analysis and drug development. - Anoop Kishor Singh Gurjar, Abhijeet Singh Panwar, Rajinder Gupta
, Shrikant S. Mantri
:
PmiRExAt: plant miRNA expression atlas database and web applications. - Rahul Agarwal
, Binayak Kumar, Msk Jayadev, Dhwani Raghav, Ashutosh Singh
:
CoReCG: a comprehensive database of genes associated with colon-rectal cancer. - Yajing Hao
, Wei Wu
, Hui Li, Jiao Yuan, Jianjun Luo
, Yi Zhao
, Runsheng Chen
:
NPInter v3.0: an upgraded database of noncoding RNA-associated interactions. - Sefa Kiliç, Dinara M. Sagitova, Shoshannah Wolfish, Benoit Bely
, Mélanie Courtot
, Stacy Ciufo, Tatiana A. Tatusova, Claire O'Donovan
, Marcus C. Chibucos
, Maria Jesus Martin
, Ivan Erill
:
From data repositories to submission portals: rethinking the role of domain-specific databases in CollecTF. - Simon Fishilevich, Shahar Zimmerman, Asher Kohn, Tsippi Iny Stein, Tsviya Olender, Eugene Kolker, Marilyn Safran, Doron Lancet:
Genic insights from integrated human proteomics in GeneCards. - Jinghang Gu
, Longhua Qian, Guodong Zhou
:
Chemical-induced disease relation extraction with various linguistic features. - Valérie Hinard, Aurore Britan, J. S. Rougier, Amos Bairoch
, Hugues Abriel
, Pascale Gaudet
:
ICEPO: the ion channel electrophysiology ontology. - Girolamo Giudice
, Fátima Sánchez-Cabo, Carlos Torroja Fungairino
, Enrique Lara Pezzi
:
ATtRACT - a database of RNA-binding proteins and associated motifs. - Alison Callahan, Saminda Abeyruwan, Hassan Al-Ali
, Kunie Sakurai, Adam R. Ferguson
, Phillip G. Popovich, Nigam H. Shah, Ubbo Visser
, John L. Bixby, Vance P. Lemmon
:
RegenBase: a knowledge base of spinal cord injury biology for translational research. - Daniel M. Lowe, Noel M. O'Boyle
, Roger A. Sayle:
Efficient chemical-disease identification and relationship extraction using Wikipedia to improve recall. - Kyubum Lee
, Sunwon Lee, Sungjoon Park, Sunkyu Kim, Suhkyung Kim, Kwanghun Choi, Aik Choon Tan
, Jaewoo Kang:
BRONCO: Biomedical entity Relation ONcology COrpus for extracting gene-variant-disease-drug relations. - Christopher Hardt
, Moritz Emanuel Beber
, Axel Rasche, Atanas Kamburov, Dennie G. A. J. Hebels, Jos C. S. Kleinjans, Ralf Herwig
:
ToxDB: pathway-level interpretation of drug-treatment data. - Xiaoxiao Yun, Lili Xia, Bixia Tang, Hui Zhang, Feifei Li, Zhihua Zhang:
3CDB: a manually curated database of chromosome conformation capture data. - Ewoud Pons
, Benedikt F. H. Becker
, Saber A. Akhondi, Zubair Afzal
, Erik M. van Mulligen
, Jan A. Kors:
Extraction of chemical-induced diseases using prior knowledge and textual information. - Huiwei Zhou, Huijie Deng, Long Chen, Yunlong Yang, Chen Jia
, Degen Huang:
Exploiting syntactic and semantics information for chemical-disease relation extraction. - Megan Druce, Chantal Hulo, Patrick Masson
, Paula Sommer
, Ioannis Xenarios, Philippe Le Mercier
, Tulio de Oliveira:
Improving HIV proteome annotation: new features of BioAfrica HIV Proteomics Resource. - Yaoyun Zhang, Jun Xu, Hui Chen
, Jingqi Wang, Yonghui Wu, Manu Prakasam, Hua Xu:
Chemical named entity recognition in patents by domain knowledge and unsupervised feature learning. - Tong Shu Li, Àlex Bravo
, Laura I. Furlong, Benjamin M. Good, Andrew I. Su
:
A crowdsourcing workflow for extracting chemical-induced disease relations from free text. - Daniel Arend
, Astrid Junker
, Uwe Scholz
, Danuta Schüler
, Juliane Wylie, Matthias Lange
:
PGP repository: a plant phenomics and genomics data publication infrastructure. - Alexey I. Kuzmenkov
, Nikolay A. Krylov
, Anton O. Chugunov
, Eugene V. Grishin, Alexander A. Vassilevski
:
Kalium: a database of potassium channel toxins from scorpion venom. - Karina Yusim, Hyejin Yoon, Brian T. Foley
, Shihai Feng, Jennifer Macke, Mira Dimitrijevic, Werner Abfalterer, James Szinger
, Will Fischer
, Carla Kuiken, Bette T. Korber
:
Integrated sequence and immunology filovirus database at Los Alamos. - Van-Nui Nguyen, Kai-Yao Huang, Julia Tzu-Ya Weng, K. Robert Lai, Tzong-Yi Lee:
UbiNet: an online resource for exploring the functional associations and regulatory networks of protein ubiquitylation. - Saber A. Akhondi, Ewoud Pons
, Zubair Afzal
, Herman van Haagen, Benedikt F. H. Becker
, Kristina M. Hettne
, Erik M. van Mulligen
, Jan A. Kors:
Chemical entity recognition in patents by combining dictionary-based and statistical approaches. - Javier Herrero
, Matthieu Muffato
, Kathryn Beal, Stephen Fitzgerald, Leo Gordon, Miguel Pignatelli, Albert J. Vilella, Stephen M. J. Searle, M. Ridwan Amode, Simon Brent, William Spooner, Eugene Kulesha
, Andrew D. Yates
, Paul Flicek
:
Ensembl comparative genomics resources. - Sook Jung, Taein Lee, Stephen P. Ficklin, Jing Yu, Chun-Huai Cheng, Dorrie Main:
Chado use case: storing genomic, genetic and breeding data of Rosaceae and Gossypium crops in Chado. - Gurpreet S. Ghattaoraya
, Yenal Dundar
, Faviel F. Gonzalez-Galarza, Maria Helena Thomaz Maia
, Eduardo José Melo dos Santos
, Andrea Luciana Soares da Silva
, Antony McCabe
, Derek Middleton, Ana Alfirevic, Rumona Dickson, Andrew R. Jones
:
A web resource for mining HLA associations with adverse drug reactions: HLA-ADR. - Soheil Moosavinasab, Jeremy Patterson
, Robert Strouse, Majid Rastegar-Mojarad, Kelly Regan
, Philip R. O. Payne
, Yungui Huang, Simon M. Lin:
'RE: fine drugs': an interactive dashboard to access drug repurposing opportunities. - Patrice Baa-Puyoulet, Nicolas Parisot
, Gérard Febvay
, Jaime Huerta-Cepas
, Augusto F. Vellozo, Toni Gabaldón, Federica Calevro
, Hubert Charles
, Stefano Colella
:
ArthropodaCyc: a CycADS powered collection of BioCyc databases to analyse and compare metabolism of arthropods. - Po-Ju Yao, Ren-Hua Chung:
GESDB: a platform of simulation resources for genetic epidemiology studies. - Giltae Song
, Rama Balakrishnan, Gail Binkley, Maria C. Costanzo, Kyla S. Dalusag
, Janos Demeter, Stacia R. Engel
, Sage T. Hellerstedt, Kalpana Karra, Benjamin C. Hitz, Robert S. Nash, Kelley M. Paskov, Travis K. Sheppard
, Marek S. Skrzypek, Shuai Weng, Edith D. Wong, J. Michael Cherry
:
Integration of new alternative reference strain genome sequences into the Saccharomyces genome database. - Dennis J. Pelletier, Thomas C. Wiegers, Ahmed Enayetallah, C. Kibbey, Mark Gosink
, P. Koza-Taylor, Carolyn J. Mattingly
, M. Lawton:
ToxEvaluator: an integrated computational platform to aid the interpretation of toxicology study-related findings. - Jiao Li
, Yueping Sun, Robin J. Johnson, Daniela Sciaky
, Chih-Hsuan Wei
, Robert Leaman, Allan Peter Davis, Carolyn J. Mattingly
, Thomas C. Wiegers, Zhiyong Lu:
BioCreative V CDR task corpus: a resource for chemical disease relation extraction. - Yifan Peng
, Cecilia N. Arighi
, Cathy H. Wu
, K. Vijay-Shanker:
BioC-compatible full-text passage detection for protein-protein interactions using extended dependency graph. - Po-Ting Lai
, Yu-Yan Lo, Ming-Siang Huang, Yu-Cheng Hsiao
, Richard Tzong-Han Tsai
:
BelSmile: a biomedical semantic role labeling approach for extracting biological expression language from text. - Robert Leaman, Chih-Hsuan Wei
, Cherry Zou, Zhiyong Lu:
Mining chemical patents with an ensemble of open systems. - Olivier Sallou, Paula Duek Roggli
, Thomas A. Darde
, Olivier Collin
, Lydie Lane
, Frédéric Chalmel
:
PepPSy: a web server to prioritize gene products in experimental and biocuration workflows. - Mary Shimoyama, Jennifer R. Smith, Jeff de Pons, Marek Tutaj, Pawjai Khampang, Wenzhou Hong, Christy B. Erbe, Garth D. Ehrlich
, Lauren O. Bakaletz, Joseph E. Kerschner:
The Chinchilla Research Resource Database: resource for an otolaryngology disease model. - Shu-Fen Li, Guo-Jun Zhang
, Xue-Jin Zhang, Jin-Hong Yuan, Chuan-Liang Deng, Lian-Feng Gu, Wujun Gao:
DPTEdb, an integrative database of transposable elements in dioecious plants. - Majid Rastegar-Mojarad, Ravikumar Komandur Elayavilli, Hongfang Liu:
BELTracker: evidence sentence retrieval for BEL statements. - Firoj Alam, Anna Corazza, Alberto Lavelli, Roberto Zanoli:
A knowledge-poor approach to chemical-disease relation extraction. - Peter McQuilton
, Alejandra N. González-Beltrán, Philippe Rocca-Serra, Milo Thurston, Allyson L. Lister
, Eamonn Maguire, Susanna-Assunta Sansone
:
BioSharing: curated and crowd-sourced metadata standards, databases and data policies in the life sciences. - Lisa Posch, Maryam Panahiazar, Michel Dumontier, Olivier Gevaert
:
Predicting structured metadata from unstructured metadata. - Eugene Baulin
, Victor Yacovlev, Denis Khachko, Sergei A. Spirin
, Mikhail Roytberg:
URS DataBase: universe of RNA structures and their motifs. - So Nakagawa
, Mahoko Ueda Takahashi
:
gEVE: a genome-based endogenous viral element database provides comprehensive viral protein-coding sequences in mammalian genomes. - Miguel A. Ibarra-Arellano, Adrián I. Campos-González
, Luis G. Treviño-Quintanilla, Andreas Tauch, Julio A. Freyre-González
:
Abasy Atlas: a comprehensive inventory of systems, global network properties and systems-level elements across bacteria. - Hong-Jie Dai, Chu-Hsien Su, Po-Ting Lai
, Ming-Siang Huang, Jitendra Jonnagaddala
, Toni Rose Jue
, Shruti Rao
, Hui-Jou Chou, Marija Milacic
, Onkar Singh, Syed Abdul Shabbir
, Wen-Lian Hsu:
MET network in PubMed: a text-mined network visualization and curation system. - Wei-Sheng Wu, Fu-Jou Lai, Bor-Wen Tu, Darby Tien-Hao Chang:
CoopTFD: a repository for predicted yeast cooperative transcription factor pairs. - Chen Li, Jeremy Nagel, Steve G. Androulakis, Christopher J. Lupton, Jiangning Song
, Ashley M. Buckle
:
PolyQ 2.0: an improved version of PolyQ, a database of human polyglutamine proteins. - Na Han, Yujun Qiang, Wen Zhang:
ANItools web: a web tool for fast genome comparison within multiple bacterial strains. - Roddy Jorquera, Rodrigo Ortiz, Francisco Ossandón, Juan Pablo Cárdenas
, Rene Sepúlveda, Carolina González
, David S. Holmes
:
SinEx DB: a database for single exon coding sequences in mammalian genomes. - Àlex Bravo
, Tong Shu Li, Andrew I. Su
, Benjamin M. Good, Laura I. Furlong:
Combining machine learning, crowdsourcing and expert knowledge to detect chemical-induced diseases in text. - Bronwen L. Aken, Sarah C. Ayling, Daniel Barrell
, Laura Clarke
, Valery Curwen, Susan Fairley
, Julio Fernandez-Banet
, Konstantinos Billis
, Carlos García-Girón
, Thibaut Hourlier
, Kevin Lee Howe
, Andreas Kähäri
, Felix Kokocinski
, Fergal J. Martin
, Daniel N. Murphy
, Rishi Nag
, Magali Ruffier
, Michael Schuster, Y. Amy Tang
, Jan Vogel, Simon White
, Amonida Zadissa
, Paul Flicek
, Stephen M. J. Searle:
The Ensembl gene annotation system. - Mais G. Ammari, Cathy R. Gresham, Fiona M. McCarthy
, Bindu Nanduri:
HPIDB 2.0: a curated database for host-pathogen interactions. - Haodi Li, Buzhou Tang, Qingcai Chen, Kai Chen, Xiaolong Wang, Baohua Wang, Zhe Wang:
HITSZ_CDR: an end-to-end chemical and disease relation extraction system for BioCreative V. - Sushil Tripathi, Steven Vercruysse
, Konika Chawla, Karen R. Christie, Judith A. Blake
, Rachael P. Huntley
, Sandra E. Orchard
, Henning Hermjakob
, Liv Thommesen, Astrid Lægreid, Martin Kuiper:
Gene regulation knowledge commons: community action takes care of DNA binding transcription factors. - Hsin-Chun Lee, Yi-Yu Hsu, Hung-Yu Kao:
AuDis: an automatic CRF-enhanced disease normalization in biomedical text. - Sérgio Matos
, David Campos, Renato P. Pinho, Raquel M. Silva
, Matthew E. Mort, David N. Cooper, José Luís Oliveira
:
Mining clinical attributes of genomic variants through assisted literature curation in Egas. - Tian Tian, Qi You, Liwei Zhang, Xin Yi, Hengyu Yan, Wenying Xu, Zhen Su
:
SorghumFDB: sorghum functional genomics database with multidimensional network analysis.