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Journal of Biomedical Informatics, Volume 40
Volume 40, Number 1, February 2007
- Peter Tarczy-Hornoch
, Mia K. Markey
, John A. Smith, Tadaaki Hiruki:
Bio*Medical informatics and genomic medicine: Research and training. 1-4
- Brenton Louie, Peter Mork, Fernando Martín-Sánchez
, Alon Y. Halevy, Peter Tarczy-Hornoch
:
Data integration and genomic medicine. 5-16
- Raúl Alonso-Calvo
, Victor Maojo, Holger Billhardt
, Fernando Martín-Sánchez
, Miguel García-Remesal, David Pérez-Rey:
An agent- and ontology-based system for integrating public gene, protein, and disease databases. 17-29 - Nicholas Sioutos, Sherri de Coronado, Margaret W. Haber, Frank W. Hartel, Wen-Ling Shaiu, Lawrence W. Wright:
NCI Thesaurus: A semantic model integrating cancer-related clinical and molecular information. 30-43 - Mark A. Hoffman:
The genome-enabled electronic medical record. 44-46 - Douglas R. Mitchell, Joyce A. Mitchell:
Status of clinical gene sequencing data reporting and associated risks for information loss. 47-54
- Russ B. Altman, Teri E. Klein
:
Biomedical informatics training at Stanford in the 21st century. 55-58 - Stephen B. Johnson
, Richard A. Friedman:
Bridging the gap between biological and clinical informatics in a graduate training program. 59-66 - Michael D. Kane, Jeffrey L. Brewer:
An information technology emphasis in biomedical informatics education. 67-72 - Mark Gerstein, Dov Greenbaum
, Kei-Hoi Cheung, Perry L. Miller:
An interdepartmental Ph.D. program in computational biology and bioinformatics: The Yale perspective. 73-79
Volume 40, Number 2, April 2007
- Sameer Malhotra, Desmond A. Jordan, Edward H. Shortliffe
, Vimla L. Patel:
Workflow modeling in critical care: Piecing together your own puzzle. 81-92 - Jorge R. Herskovic
, M. Sriram Iyengar, Elmer V. Bernstam:
Using hit curves to compare search algorithm performance. 93-99 - Steven E. Labkoff, William A. Yasnoff:
A framework for systematic evaluation of health information infrastructure progress in communities. 100-105 - S. Trent Rosenbloom, Adrienne N. Crow, Jennifer Urbano Blackford, Kevin B. Johnson:
Cognitive factors influencing perceptions of clinical documentation tools. 106-113 - Yasunori Yamamoto, Toshihisa Takagi:
Biomedical knowledge navigation by literature clustering. 114-130 - Ray L. Somorjai, Brion Dolenko, Marina Mandelzweig:
Direct classification of high-dimensional data in low-dimensional projected feature spaces - Comparison of several classification methodologies. 131-138 - Szymon Nowakowski
, Jerzy Tiuryn
:
A new approach to the assessment of the quality of predictions of transcription factor binding sites. 139-149 - Hong Yu, Won Kim, Vasileios Hatzivassiloglou, W. John Wilbur:
Using MEDLINE as a knowledge source for disambiguating abbreviations and acronyms in full-text biomedical journal articles. 150-159 - Markus Brameier, Carsten Wiuf
:
Co-clustering and visualization of gene expression data and gene ontology terms for Saccharomyces cerevisiae using self-organizing maps. 160-173 - Janet F. E. Penz, Adam B. Wilcox, John F. Hurdle
:
Automated identification of adverse events related to central venous catheters. 174-182
- Li Zhou, George Hripcsak:
Temporal reasoning with medical data - A review with emphasis on medical natural language processing. 183-202
Volume 40, Number 3, June 2007
- Boris A. Galitsky
, Sergei O. Kuznetsov, Dmitry V. Vinogradov:
Applying hybrid reasoning to mine for associative features in biological data. 203-220 - Silvia Alayón, Richard Robertson
, Simon K. Warfield
, Juan Ruiz-Alzola
:
A fuzzy system for helping medical diagnosis of malformations of cortical development. 221-235 - Hong Yu, Minsuk Lee, David R. Kaufman, John W. Ely
, Jerome A. Osheroff, George Hripcsak, James J. Cimino
:
Development, implementation, and a cognitive evaluation of a definitional question answering system for physicians. 236-251 - Olga Brazhnik, John F. Jones:
Anatomy of data integration. 252-269 - P. Karina Tulipano, Ying Tao, William S. Millar, Pat Zanzonico, Katherine Kolbert, Hua Xu, Hong Yu, Lifeng Chen, Yves A. Lussier
, Carol Friedman:
Natural language processing and visualization in the molecular imaging domain. 270-281 - David A. Dorr, Spencer S. Jones
, Adam B. Wilcox:
A framework for information system usage in collaborative care. 282-287 - Ted Pedersen
, Serguei V. S. Pakhomov, Siddharth Patwardhan, Christopher G. Chute:
Measures of semantic similarity and relatedness in the biomedical domain. 288-299 - Michael Bada, Lawrence Hunter
:
Enrichment of OBO ontologies. 300-315 - Martijn J. Schuemie, Barend Mons
, Marc Weeber, Jan A. Kors:
Evaluation of techniques for increasing recall in a dictionary approach to gene and protein name identification. 316-324 - Qing T. Zeng, Juan Pablo Pratt, Jane Pak, Dino Ravnic, Harold Huss, Steven J. Mentzer:
Feature-guided clustering of multi-dimensional flow cytometry datasets. 325-331 - Umberto Giani, G. Brascio, Dario Bruzzese
, Carmine Garzillo
, S. Vigilante:
Emotional and cognitive information processing in web-based medical education. 332-342 - Hui Cao, George Hripcsak, Marianthi Markatou:
A statistical methodology for analyzing co-occurrence data from a large sample. 343-352
- Chunhua Weng
, John H. Gennari
, Douglas B. Fridsma:
User-centered semantic harmonization: A case study. 353-364
Volume 40, Number 4, August 2007
- Rita Kukafka
, William A. Yasnoff:
Public health informatics. 365-369
- David L. Buckeridge:
Outbreak detection through automated surveillance: A review of the determinants of detection. 370-379
- Sharib A. Khan:
Handbook of Biosurveillance, M.M. Wagner, A.W. Moore, R.M. Aryel (Eds.). Elsevier Inc. ISBN-13: 978-0-12-369378-5. 380-381
- Shannon A. Sims, Laverne A. Snow, Christina A. Porucznik:
Surveillance of methadone-related adverse drug events using multiple public health data sources. 382-389 - Wilson W. Odero, Joseph K. Rotich, Constantin T. Yiannoutsos, Tom Ouna, William M. Tierney:
Innovative approaches to application of information technology in disease surveillance and prevention in Western Kenya. 390-397 - Rita Kukafka
, Jessica S. Ancker
, Connie V. Chan, John Chelico, Sharib A. Khan, Selasie Mortoti, Karthik Natarajan, Kempton Presley, Kayann Stephens:
Redesigning electronic health record systems to support public health. 398-409 - Debra Revere
, Anne M. Turner, Ann Madhavan, Neil Rambo
, Paul F. Bugni, Ann Marie Kimball, Sherrilynne S. Fuller:
Understanding the information needs of public health practitioners: A literature review to inform design of an interactive digital knowledge management system. 410-421 - Jacqueline Merrill
, Suzanne Bakken, Maxine L. Rockoff, Kristine Gebbie, Kathleen M. Carley
:
Description of a method to support public health information management: Organizational network analysis. 422-428 - Toomas Timpka
, Magnus Bång
, Tom Delbanco, Janet Walker:
Information infrastructure for inter-organizational mental health services: An actor network theory analysis of psychiatric rehabilitation. 429-437 - Nada Lavrac, Marko Bohanec, Aleksander Pur, Bojan Cestnik, Marko Debeljak, Andrej Kobler:
Data mining and visualization for decision support and modeling of public health-care resources. 438-447
- Ronald N. Kostoff:
Validating discovery in literature-based discovery. 448-450 - Wanda Pratt
, Meliha Yetisgen-Yildiz:
Response to ''Validating discovery in literature-based discovery". 450-452
Volume 40, Number 5, October 2007
- Xin Li
, Hsinchun Chen, Zan Huang, Hua Su, Jesse D. Martinez:
Global mapping of gene/protein interactions in PubMed abstracts: A framework and an experiment with P53 interactions. 453-464 - Mohammad R. Akbarzadeh-Totonchi, Majid Moshtagh-Khorasani:
A hierarchical fuzzy rule-based approach to aphasia diagnosis. 465-475 - Dorota Formanowicz
, Andrea Sackmann, Piotr Formanowicz, Jacek Blazewicz
:
Petri net based model of the body iron homeostasis. 476-485 - Giorgio Leonardi, Silvia Panzarasa, Silvana Quaglini, Mario Stefanelli, Wil M. P. van der Aalst
:
Interacting agents through a web-based health serviceflow management system. 486-499 - Chaeyoung Lee
, Jungdae Park:
Estimation of epistasis among finite polygenic loci for complex traits with a mixed model using Gibbs sampling. 500-506 - Ohad Young, Yuval Shahar
, Yair Liel, Eitan Lunenfeld, Guy Bar, Erez Shalom, Susana B. Martins, Laszlo T. Vaszar
, Tal Marom, Mary K. Goldstein:
Runtime application of Hybrid-Asbru clinical guidelines. 507-526 - Kaei Hiroi, Keisuke Ido, Woosung Yang, Jun Nakaya:
Interface analysis between GSVML and HL7 version 3. 527-538 - Brian Hazlehurst, Carmit K. McMullen, Paul N. Gorman:
Distributed cognition in the heart room: How situation awareness arises from coordinated communications during cardiac surgery. 539-551 - Shizhu Zang, Ruifang Guo, Liang Zhang, Youyong Lu:
Integration of statistical inference methods and a novel control measure to improve sensitivity and specificity of data analysis in expression profiling studies. 552-560 - Yue Wang, Michael Halper, Hua Min
, Yehoshua Perl, Yan Chen, Kent A. Spackman:
Structural methodologies for auditing SNOMED. 561-581
- Philip R. O. Payne
, Eneida A. Mendonça, Stephen B. Johnson
, Justin Starren:
Conceptual knowledge acquisition in biomedicine: A methodological review. 582-602
- Andrea Califano:
Hui-Huang Hsu, Advanced Data Mining Technologies in Bioinformatics, Editors: Idea Group Publishing, pp 239. 603-604
Volume 40, Number 6, December 2007
- John H. Holmes, Niels Peek:
Intelligent data analysis in biomedicine. 605-608
- Marion Verduijn, Niels Peek, Peter M. J. Rosseel, Evert de Jonge
, Bas A. de Mol:
Prognostic Bayesian networks: I: Rationale, learning procedure, and clinical use. 609-618 - Marion Verduijn, Peter M. J. Rosseel, Niels Peek, Evert de Jonge
, Bas A. de Mol:
Prognostic Bayesian networks: II: An application in the domain of cardiac surgery. 619-630 - Birgit Lessmann, Tim W. Nattkemper
, Volkmar H. Hans, Andreas Degenhard:
A method for linking computed image features to histological semantics in neuropathology. 631-641 - Garrick L. Wallstrom, William R. Hogan
:
Unsupervised clustering of over-the-counter healthcare products into product categories. 642-648 - Tudor Toma, Ameen Abu-Hanna
, Robert-Jan Bosman:
Discovery and inclusion of SOFA score episodes in mortality prediction. 649-660 - Janez Demsar, Gregor Leban, Blaz Zupan
:
FreeViz - An intelligent multivariate visualization approach to explorative analysis of biomedical data. 661-671 - Thomas Guyet
, Catherine Garbay, Michel Dojat
:
Knowledge construction from time series data using a collaborative exploration system. 672-687 - Michael E. Matheny
, Frederic S. Resnic, Nipun Arora, Lucila Ohno-Machado
:
Effects of SVM parameter optimization on discrimination and calibration for post-procedural PCI mortality. 688-697 - Eleftherios Panteris
, Stephen Swift
, Annette M. Payne
, Xiaohui Liu:
Mining pathway signatures from microarray data and relevant biological knowledge. 698-706 - Junbai Wang:
A new framework for identifying combinatorial regulation of transcription factors: A case study of the yeast cell cycle. 707-725 - Losiana Nayak
, Rajat K. De:
An algorithm for modularization of MAPK and calcium signaling pathways: Comparative analysis among different species. 726-749 - Valentin Dinu, Hongyu Zhao
, Perry L. Miller:
Integrating domain knowledge with statistical and data mining methods for high-density genomic SNP disease association analysis. 750-760 - Lucia Sacchi
, Cristiana Larizza
, Paolo Magni
, Riccardo Bellazzi
:
Precedence Temporal Networks to represent temporal relationships in gene expression data. 761-774 - Pritha Mahata, Kaushik Mahata:
Selecting differentially expressed genes using minimum probability of classification error. 775-786
- Riccardo Bellazzi
, Blaz Zupan
:
Towards knowledge-based gene expression data mining. 787-802
Volume 40, Number 6, Supplement, December 2007
Guest Editorial
- George Hripcsak:
Developing common methods for evaluating health information exchange. S1-S2
- George Hripcsak, Rainu Kaushal, Kevin B. Johnson, Joan S. Ash, David W. Bates, Rachel Block, Mark E. Frisse
, Lisa M. Kern
, Janet Marchibroda, J. Marc Overhage
, Adam B. Wilcox:
The United Hospital Fund meeting on evaluating health information exchange. S3-S10 - Janet Marchibroda:
Health information exchange policy and evaluation. S11-S16 - Lisa M. Kern
, Rainu Kaushal:
Health information technology and health information exchange in New York State: New initiatives in implementation and evaluation. S17-S20 - Kevin B. Johnson, Cynthia S. Gadd:
Playing smallball: Approaches to evaluating pilot health information exchange systems. S21-S26 - Mark E. Frisse
, Rodney L. Holmes:
Estimated financial savings associated with health information exchange and ambulatory care referral. S27-S32 - Joan S. Ash, Kenneth P. Guappone:
Qualitative evaluation of health information exchange efforts. S33-S39 - David C. Kaelber
, David W. Bates:
Health information exchange and patient safety. S40-S45 - Jason S. Shapiro:
Evaluating public health uses of health information exchange. S46-S49
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