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Simon Keith Warfield
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2020 – today
- 2024
[j91]Serge Vasylechko Didenko
, Simon K. Warfield, Sila Kurugol, Onur Afacan:
Improved myelin water fraction mapping with deep neural networks using synthetically generated 3D data. Medical Image Anal. 91: 102966 (2024)- [j90]Camilo Calixto, Camilo Jaimes, Matheus D. Soldatelli, Simon K. Warfield, Ali Gholipour, Davood Karimi:
Anatomically constrained tractography of the fetal brain. NeuroImage 297: 120723 (2024) - [i25]Noga Kertes, Yael Zaffrani-Reznikov, Onur Afacan, Sila Kurugol, Simon K. Warfield, Moti Freiman:
IVIM-Morph: Motion-compensated quantitative Intra-voxel Incoherent Motion (IVIM) analysis for functional fetal lung maturity assessment from diffusion-weighted MRI data. CoRR abs/2401.07126 (2024) - [i24]Camilo Calixto, Camilo Jaimes, Matheus D. Soldatelli, Simon K. Warfield, Ali Gholipour, Davood Karimi:
Anatomically Constrained Tractography of the Fetal Brain. CoRR abs/2403.02444 (2024) - [i23]Samah Khawaled, Simon K. Warfield, Moti Freiman:
A self-attention model for robust rigid slice-to-volume registration of functional MRI. CoRR abs/2404.04546 (2024) - [i22]Weide Liu, Camilo Calixto, Simon K. Warfield, Davood Karimi:
Streamline tractography of the fetal brain in utero with machine learning. CoRR abs/2408.14326 (2024) - [i21]Davood Karimi, Camilo Calixto, Haykel Snoussi, Maria Camila Cortes-Albornoz, Clemente Velasco-Annis, Caitlin K. Rollins, Camilo Jaimes, Ali Gholipour, Simon K. Warfield:
Detailed delineation of the fetal brain in diffusion MRI via multi-task learning. CoRR abs/2409.06716 (2024) - 2023
- [j89]Saima Safdar, Benjamin F. Zwick, Yue Yu, George C. Bourantas, Grand R. Joldes, Simon K. Warfield, Damon E. Hyde, Sarah F. Frisken, Tina Kapur, Ron Kikinis, Alexandra J. Golby, Arya Nabavi, Adam Wittek, Karol Miller:
SlicerCBM: automatic framework for biomechanical analysis of the brain. Int. J. Comput. Assist. Radiol. Surg. 18(10): 1925-1940 (2023) - [i20]Rui Nian, Guoyao Zhang, Yao Sui, Yuqi Qian, Qiuying Li, Mingzhang Zhao, Jianhui Li, Ali Gholipour, Simon K. Warfield:
3D Brainformer: 3D Fusion Transformer for Brain Tumor Segmentation. CoRR abs/2304.14508 (2023) - 2022
- [j88]Jeff L. Waugh, Asim A. O. Hassan, John K. Kuster, Jacob M. Levenstein, Simon Keith Warfield, Nikolaos Makris, Norbert Brüggemann, Nutan Sharma, Hans C. Breiter, Anne J. Blood:
An MRI method for parcellating the human striatum into matrix and striosome compartments in vivo. NeuroImage 246: 118714 (2022) - [j87]Benjamin F. Zwick, George C. Bourantas, Saima Safdar, Grand R. Joldes, Damon E. Hyde, Simon K. Warfield, Adam Wittek, Karol Miller:
Patient-specific solution of the electrocorticography forward problem in deforming brain. NeuroImage 263: 119649 (2022) - [j86]Arvind Balachandrasekaran, Alexander Li Cohen, Onur Afacan, Simon K. Warfield, Ali Gholipour:
Reducing the Effects of Motion Artifacts in fMRI: A Structured Matrix Completion Approach. IEEE Trans. Medical Imaging 41(1): 172-185 (2022) - [j85]Yao Sui, Onur Afacan, Camilo Jaimes, Ali Gholipour, Simon K. Warfield:
Scan-Specific Generative Neural Network for MRI Super-Resolution Reconstruction. IEEE Trans. Medical Imaging 41(6): 1383-1399 (2022) - [c175]Yael Zaffrani-Reznikov, Onur Afacan, Sila Kurugol, Simon K. Warfield, Moti Freiman:
qDWI-Morph: Motion-Compensated Quantitative Diffusion-Weighted MRI Analysis for Fetal Lung Maturity Assessment. ECCV Workshops (3) 2022: 482-494 - [c174]Noam Korngut, Elad Rotman, Onur Afacan, Sila Kurugol, Yael Zaffrani-Reznikov, Shira Nemirovsky-Rotman, Simon K. Warfield, Moti Freiman:
SUPER-IVIM-DC: Intra-voxel Incoherent Motion Based Fetal Lung Maturity Assessment from Limited DWI Data Using Supervised Learning Coupled with Data-Consistency. MICCAI (2) 2022: 743-752 - [c173]Serge Vasylechko Didenko, Simon K. Warfield, Sila Kurugol, Onur Afacan:
SynthMap: a generative model for synthesis of 3D datasets for quantitative MRI parameter mapping of myelin water fraction. MIDL 2022: 1268-1284 - [d1]Benjamin F. Zwick, Saima Safdar, George C. Bourantas, Grand R. Joldes, Damon E. Hyde, Simon K. Warfield, Adam Wittek, Karol Miller:
Data for patient-specific solution of the electrocorticography forward problem in deforming brain. Zenodo, 2022
- [i19]Can Taylan Sari, Sila Kurugol, Onur Afacan, Simon K. Warfield:
CORPS: Cost-free Rigorous Pseudo-labeling based on Similarity-ranking for Brain MRI Segmentation. CoRR abs/2205.09601 (2022) - [i18]Noam Korngut, Elad Rotman, Onur Afacan, Sila Kurugol, Yael Zaffrani-Reznikov, Shira Nemirovsky-Rotman, Simon K. Warfield, Moti Freiman:
SUPER-IVIM-DC: Intra-voxel incoherent motion based Fetal lung maturity assessment from limited DWI data using supervised learning coupled with data-consistency. CoRR abs/2206.03820 (2022) - [i17]Saima Safdar, Benjamin Zwick, George C. Bourantas, Grand R. Joldes, Damon Hyde, Simon K. Warfield, Adam Wittek, Karol Miller:
Automated modeling of brain bioelectric activity within the 3D Slicer environment. CoRR abs/2208.01747 (2022) - [i16]Yael Zaffrani-Reznikov, Onur Afacan, Sila Kurugol, Simon K. Warfield, Moti Freiman:
qDWI-Morph: Motion-compensated quantitative Diffusion-Weighted MRI analysis for fetal lung maturity assessment. CoRR abs/2208.09836 (2022) - 2021
- [j84]Davood Karimi, Simon K. Warfield, Ali Gholipour:
Transfer learning in medical image segmentation: New insights from analysis of the dynamics of model parameters and learned representations. Artif. Intell. Medicine 116: 102078 (2021) - [j83]Jaume Coll-Font, Onur Afacan, Jeanne Chow, Richard S. Lee, Simon K. Warfield, Sila Kurugol:
Modeling dynamic radial contrast enhanced MRI with linear time invariant systems for motion correction in quantitative assessment of kidney function. Medical Image Anal. 67: 101880 (2021) - [j82]Alexis Reymbaut, Alex Valcourt Caron, Guillaume Gilbert, Filip Szczepankiewicz, Markus Nilsson, Simon K. Warfield, Maxime Descoteaux, Benoit Scherrer:
Magic DIAMOND: Multi-fascicle diffusion compartment imaging with tensor distribution modeling and tensor-valued diffusion encoding. Medical Image Anal. 70: 101988 (2021) - [j81]Davood Karimi, Lana Vasung, Camilo Jaimes, Fedel Machado-Rivas, Shadab Khan, Simon K. Warfield, Ali Gholipour:
A machine learning-based method for estimating the number and orientations of major fascicles in diffusion-weighted magnetic resonance imaging. Medical Image Anal. 72: 102129 (2021) - [j80]Davood Karimi, Lana Vasung, Camilo Jaimes, Fedel Machado-Rivas, Simon K. Warfield, Ali Gholipour:
Learning to estimate the fiber orientation distribution function from diffusion-weighted MRI. NeuroImage 239: 118316 (2021) - [j79]Davood Karimi, Camilo Jaimes, Fedel Machado-Rivas, Lana Vasung, Shadab Khan, Simon K. Warfield, Ali Gholipour:
Deep learning-based parameter estimation in fetal diffusion-weighted MRI. NeuroImage 243: 118482 (2021) - [j78]Yao Sui, Onur Afacan, Camilo Jaimes, Ali Gholipour, Simon K. Warfield:
Gradient-Guided Isotropic MRI Reconstruction From Anisotropic Acquisitions. IEEE Trans. Computational Imaging 7: 1240-1253 (2021) - [c172]Yao Sui, Onur Afacan, Ali Gholipour, Simon K. Warfield:
MRI Super-Resolution Through Generative Degradation Learning. MICCAI (6) 2021: 430-440 - [i15]Davood Karimi, Simon K. Warfield, Ali Gholipour:
Calibrated Diffusion Tensor Estimation. CoRR abs/2111.10847 (2021) - 2020
- [j77]Davood Karimi, Haoran Dou, Simon K. Warfield, Ali Gholipour:
Deep learning with noisy labels: Exploring techniques and remedies in medical image analysis. Medical Image Anal. 65: 101759 (2020) - [j76]Lipeng Ning, Elisenda Bonet-Carne, Francesco Grussu, Farshid Sepehrband, Enrico Kaden, Jelle Veraart, Stefano B. Blumberg, Can Son Khoo, Marco Palombo, Iasonas Kokkinos, Daniel C. Alexander, Jaume Coll-Font, Benoit Scherrer, Simon K. Warfield, Suheyla Cetin Karayumak, Yogesh Rathi, Simon Koppers, Leon Weninger, Chantal M. W. Tax:
Cross-scanner and cross-protocol multi-shell diffusion MRI data harmonization: Algorithms and results. NeuroImage 221: 117128 (2020) - [j75]Yao Sui, Onur Afacan, Ali Gholipour, Simon K. Warfield:
SLIMM: Slice localization integrated MRI monitoring. NeuroImage 223: 117280 (2020) - [c171]Seyhmus Guler, Burak Erem, Alexander Li Cohen, Onur Afacan, Simon K. Warfield:
Dynamic Missing-Data Completion Reduces Leakage of Motion Artifact Caused by Temporal Filtering that Remains After Scrubbing. ISBI 2020: 1-4 - [c170]Davood Karimi, Jurriaan M. Peters, Abdelhakim Ouaalam, Sanjay P. Prabhu, Mustafa Sahin, Darcy A. Krueger, Alexander Kolevzon, Charis Eng, Simon K. Warfield, Ali Gholipour:
Learning to Detect Brain Lesions from Noisy Annotations. ISBI 2020: 1910-1914 - [c169]Yao Sui, Onur Afacan, Ali Gholipour, Simon K. Warfield:
Learning a Gradient Guidance for Spatially Isotropic MRI Super-Resolution Reconstruction. MICCAI (2) 2020: 136-146 - [i14]Davood Karimi, Simon K. Warfield, Ali Gholipour:
Critical Assessment of Transfer Learning for Medical Image Segmentation with Fully Convolutional Neural Networks. CoRR abs/2006.00356 (2020) - [i13]Davood Karimi, Lana Vasung, Camilo Jaimes, Fedel Machado-Rivas, Shadab Khan, Simon K. Warfield, Ali Gholipour:
A machine learning-based method for estimating the number and orientations of major fascicles in diffusion-weighted magnetic resonance imaging. CoRR abs/2006.11117 (2020)
2010 – 2019
- 2019
- [j74]Seyed Raein Hashemi, Seyed Sadegh Mohseni Salehi, Deniz Erdogmus, Sanjay P. Prabhu, Simon K. Warfield, Ali Gholipour:
Asymmetric Loss Functions and Deep Densely-Connected Networks for Highly-Imbalanced Medical Image Segmentation: Application to Multiple Sclerosis Lesion Detection. IEEE Access 7: 1721-1735 (2019) - [j73]Grand Roman Joldes, George C. Bourantas, Benjamin Zwick, Habibullah Amin Chowdhury, Adam Wittek, Sudip Agrawal, Konstantinos A. Mountris, Damon Hyde, Simon K. Warfield, Karol Miller:
Suite of meshless algorithms for accurate computation of soft tissue deformation for surgical simulation. Medical Image Anal. 56: 152-171 (2019) - [j72]Gaëtan Rensonnet, Benoît Scherrer, Gabriel Girard, Aleksandar Jankovski, Simon K. Warfield, Benoît Macq, Jean-Philippe Thiran, Maxime Taquet:
Towards microstructure fingerprinting: Estimation of tissue properties from a dictionary of Monte Carlo diffusion MRI simulations. NeuroImage 184: 964-980 (2019) - [j71]Shadab Khan, Lana Vasung, Bahram Marami, Caitlin K. Rollins, Onur Afacan, Cynthia M. Ortinau, Edward Yang, Simon K. Warfield, Ali Gholipour:
Fetal brain growth portrayed by a spatiotemporal diffusion tensor MRI atlas computed from in utero images. NeuroImage 185: 593-608 (2019) - [j70]Bonnie Alexander, Claire E. Kelly, Christopher L. Adamson, Richard Beare, Diana Zannino, Jian Chen, Andrea L. Murray, Wai Yen Loh, Lillian G. Matthews, Simon K. Warfield, Peter J. Anderson, Lex W. Doyle, Marc L. Seal, Alicia J. Spittle, Jeanie L. Y. Cheong, Deanne K. Thompson:
Changes in neonatal regional brain volume associated with preterm birth and perinatal factors. NeuroImage 185: 654-663 (2019) - [j69]Jeff L. Waugh, John K. Kuster, Miriam L. Makhlouf, Jacob M. Levenstein, Trisha J. Multhaupt-Buell, Simon K. Warfield, Nutan Sharma, Anne J. Blood:
A registration method for improving quantitative assessment in probabilistic diffusion tractography. NeuroImage 189: 288-306 (2019) - [j68]Damon E. Hyde, Jurriaan M. Peters, Simon K. Warfield:
Multi-Resolution Graph Based Volumetric Cortical Basis Functions From Local Anatomic Features. IEEE Trans. Biomed. Eng. 66(12): 3381-3392 (2019) - [j67]Jamshid Sourati, Ali Gholipour, Jennifer G. Dy, Xavier Tomas-Fernandez, Sila Kurugol, Simon K. Warfield:
Intelligent Labeling Based on Fisher Information for Medical Image Segmentation Using Deep Learning. IEEE Trans. Medical Imaging 38(11): 2642-2653 (2019) - [c168]Ali Pour Yazdanpanah, Onur Afacan, Simon K. Warfield:
Deep Plug-and-Play Prior for Parallel MRI Reconstruction. ICCV Workshops 2019: 3952-3958 - [c167]Yao Sui, Onur Afacan, Ali Gholipour, Simon K. Warfield:
Isotropic MRI Super-Resolution Reconstruction with Multi-scale Gradient Field Prior. MICCAI (3) 2019: 3-11 - [c166]Seyed Raein Hashemi, Sanjay P. Prabhu, Simon K. Warfield, Ali Gholipour:
Exclusive Independent Probability Estimation using Deep 3D Fully Convolutional DenseNets: Application to IsoIntense Infant Brain MRI Segmentation. MIDL 2019: 260-272 - [c165]Ali Pour Yazdanpanah, Onur Afacan, Simon K. Warfield:
Non-learning based deep parallel MRI reconstruction (NLDpMRI). Image Processing 2019: 1094904 - [c164]Xiao Wang, Venkatesh Sridhar, Zahra Ronaghi, Rollin C. Thomas, Jack Deslippe, Dilworth Parkinson, Gregery T. Buzzard, Samuel P. Midkiff, Charles A. Bouman, Simon K. Warfield:
Consensus equilibrium framework for super-resolution and extreme-scale CT reconstruction. SC 2019: 86:1-86:23 - [i12]Grand Roman Joldes, George C. Bourantas, Benjamin Zwick, Habibullah Amin Chowdhury, Adam Wittek, Sudip Agrawal, Konstantinos A. Mountris, Damon Hyde, Simon K. Warfield, Karol Miller:
Suite of Meshless Algorithms for Accurate Computation of Soft Tissue Deformation for Surgical Simulation. CoRR abs/1903.04760 (2019) - [i11]Karol Miller, Grand Roman Joldes, George C. Bourantas, Simon K. Warfield, Damon E. Hyde, Ron Kikinis, Adam Wittek:
Biomechanical modeling and computer simulation of the brain during neurosurgery. CoRR abs/1904.01192 (2019) - [i10]Ali Pour Yazdanpanah, Onur Afacan, Simon K. Warfield:
Deep Plug-and-Play Prior for Parallel MRI Reconstruction. CoRR abs/1909.00089 (2019) - [i9]Davood Karimi, Haoran Dou, Simon K. Warfield, Ali Gholipour:
Deep learning with noisy labels: exploring techniques and remedies in medical image analysis. CoRR abs/1912.02911 (2019) - [i8]Ali Pour Yazdanpanah, Onur Afacan, Simon K. Warfield:
ODE-based Deep Network for MRI Reconstruction. CoRR abs/1912.12325 (2019) - 2018
- [c163]Tatsuya Yokota, Burak Erem, Seyhmus Guler, Simon K. Warfield, Hidekata Hontani:
Missing Slice Recovery for Tensors Using a Low-Rank Model in Embedded Space. CVPR 2018: 8251-8259 - [c162]Damon E. Hyde, Xavier Tomas-Fernandez, Scellig S. Stone, Jurriaan M. Peters, Simon K. Warfield:
A Comparison of Point and Complete Electrode Models in a Finite Difference Model of Invasive Electrode Measurements. EMBC 2018: 4677-4680 - [c161]Sudhanya Chatterjee, Olivier Commowick, Onur Afacan, Simon K. Warfield, Christian Barillot:
Multi-compartment model of brain tissues from T2 relaxometry MRI using gamma distribution. ISBI 2018: 141-144 - [c160]Seyed Sadegh Mohseni Salehi, Seyed Raein Hashemi, Clemente Velasco-Annis, Abdelhakim Ouaalam, Judy A. Estroff, Deniz Erdogmus, Simon K. Warfield, Ali Gholipour:
Real-time automatic fetal brain extraction in fetal MRI by deep learning. ISBI 2018: 720-724 - [c159]Marzieh Haghighi, Simon K. Warfield, Sila Kurugol:
Automatic renal segmentation in DCE-MRI using convolutional neural networks. ISBI 2018: 1534-1537 - [c158]Shadab Khan, Caitlin K. Rollins, Cynthia M. Ortinau, Onur Afacan, Simon K. Warfield, Ali Gholipour:
Tract-Specific Group Analysis in Fetal Cohorts Using in utero Diffusion Tensor Imaging. MICCAI (3) 2018: 28-35 - [c157]Sudhanya Chatterjee, Olivier Commowick, Onur Afacan, Simon K. Warfield, Christian Barillot:
Identification of Gadolinium Contrast Enhanced Regions in MS Lesions Using Brain Tissue Microstructure Information Obtained from Diffusion and T2 Relaxometry MRI. MICCAI (3) 2018: 63-71 - [c156]Aymeric Stamm, Olivier Commowick, Alessandra Menafoglio, Simon K. Warfield:
A Bayes Hilbert Space for Compartment Model Computing in Diffusion MRI. MICCAI (3) 2018: 72-80 - [c155]Jamshid Sourati, Ali Gholipour, Jennifer G. Dy, Sila Kurugol, Simon K. Warfield:
Active Deep Learning with Fisher Information for Patch-Wise Semantic Segmentation. DLMIA/ML-CDS@MICCAI 2018: 83-91 - [c154]Yechiel Lamash, Sila Kurugol, Simon K. Warfield:
Semi-automated Extraction of Crohns Disease MR Imaging Markers Using a 3D Residual CNN with Distance Prior. DLMIA/ML-CDS@MICCAI 2018: 218-226 - [i7]Seyed Raein Hashemi, Seyed Sadegh Mohseni Salehi, Deniz Erdogmus, Sanjay P. Prabhu, Simon K. Warfield, Ali Gholipour:
Tversky as a Loss Function for Highly Unbalanced Image Segmentation using 3D Fully Convolutional Deep Networks. CoRR abs/1803.11078 (2018) - [i6]Tatsuya Yokota, Burak Erem, Seyhmus Guler, Simon K. Warfield, Hidekata Hontani:
Missing Slice Recovery for Tensors Using a Low-rank Model in Embedded Space. CoRR abs/1804.01736 (2018) - [i5]Ali Pour Yazdanpanah, Onur Afacan, Simon K. Warfield:
Non-Learning based Deep Parallel MRI Reconstruction (NLDpMRI). CoRR abs/1808.02122 (2018) - [i4]Seyed Raein Hashemi, Sanjay P. Prabhu, Simon K. Warfield, Ali Gholipour:
Exclusive Independent Probability Estimation using Deep 3D Fully Convolutional DenseNets for IsoIntense Infant Brain MRI Segmentation. CoRR abs/1809.08168 (2018) - 2017
- [j66]Sila Kurugol, Moti Freiman, Onur Afacan, Liran Domachevsky, Jeannette M. Perez-Rossello, Michael J. Callahan, Simon K. Warfield:
Motion-robust parameter estimation in abdominal diffusion-weighted MRI by simultaneous image registration and model estimation. Medical Image Anal. 39: 124-132 (2017) - [j65]Bonnie Alexander, Andrea L. Murray, Wai Yen Loh, Lillian G. Matthews, Christopher L. Adamson, Richard Beare, Jian Chen, Claire E. Kelly, Sandra Rees, Simon K. Warfield, Peter J. Anderson, Lex W. Doyle, Alicia J. Spittle, Jeanie L. Y. Cheong, Marc L. Seal, Deanne K. Thompson:
A new neonatal cortical and subcortical brain atlas: the Melbourne Children's Regional Infant Brain (M-CRIB) atlas. NeuroImage 147: 841-851 (2017) - [j64]Sébastien Tourbier, Clemente Velasco-Annis, Vahid Taimouri, Patric Hagmann, Reto Meuli, Simon K. Warfield, Meritxell Bach Cuadra, Ali Gholipour:
Automated template-based brain localization and extraction for fetal brain MRI reconstruction. NeuroImage 155: 460-472 (2017) - [j63]Bahram Marami, Seyed Sadegh Mohseni Salehi, Onur Afacan, Benoit Scherrer, Caitlin K. Rollins, Edward Yang, Judy A. Estroff, Simon K. Warfield, Ali Gholipour:
Temporal slice registration and robust diffusion-tensor reconstruction for improved fetal brain structural connectivity analysis. NeuroImage 156: 475-488 (2017) - [j62]Zach Eaton-Rosen, Benoît Scherrer, Andrew Melbourne, Sébastien Ourselin, Jeffrey J. Neil, Simon K. Warfield:
Investigating the maturation of microstructure and radial orientation in the preterm human cortex with diffusion MRI. NeuroImage 162: 65-72 (2017) - [j61]Burak Erem, Damon E. Hyde, Jurriaan M. Peters, Frank H. Duffy, Simon K. Warfield:
Dynamic Electrical Source Imaging (DESI) of Seizures and Interictal Epileptic Discharges Without Ensemble Averaging. IEEE Trans. Medical Imaging 36(1): 98-110 (2017) - [j60]Renaud Hédouin, Olivier Commowick, Elise Bannier, Benoit Scherrer, Maxime Taquet, Simon K. Warfield, Christian Barillot:
Block-Matching Distortion Correction of Echo-Planar Images With Opposite Phase Encoding Directions. IEEE Trans. Medical Imaging 36(5): 1106-1115 (2017) - [j59]Yuanyuan Jia, Ali Gholipour, Zhongshi He, Simon K. Warfield:
A New Sparse Representation Framework for Reconstruction of an Isotropic High Spatial Resolution MR Volume From Orthogonal Anisotropic Resolution Scans. IEEE Trans. Medical Imaging 36(5): 1182-1193 (2017) - [c153]Damon E. Hyde, Xavier Tomas-Fernandez, Scellig S. Stone, Jurriaan M. Peters, Simon K. Warfield:
Localization of stereo-electroencephalography signals using a finite difference complete electrode model. EMBC 2017: 3600-3603 - [c152]Benoit Scherrer, Maxime Taquet, Armin Schwartzman, Etienne St-Onge, Gaëtan Rensonnet, Sanjay P. Prabhu, Simon K. Warfield:
Decoupling Axial and Radial Tissue Heterogeneity in Diffusion Compartment Imaging. IPMI 2017: 440-452 - [c151]Sila Kurugol, Bahram Marami, Onur Afacan, Simon K. Warfield, Ali Gholipour:
Motion-Robust Spatially Constrained Parameter Estimation in Renal Diffusion-Weighted MRI by 3D Motion Tracking and Correction of Sequential Slices. CMMI/RAMBO/SWITCH@MICCAI 2017: 75-85 - [i3]Seyed Sadegh Mohseni Salehi, Seyed Raein Hashemi, Clemente Velasco-Annis, Abdelhakim Ouaalam, Judy A. Estroff, Deniz Erdogmus, Simon K. Warfield, Ali Gholipour:
Real-Time Automatic Fetal Brain Extraction in Fetal MRI by Deep Learning. CoRR abs/1710.09338 (2017) - [i2]Marzieh Haghighi, Simon K. Warfield, Sila Kurugol:
Automatic Renal Segmentation in DCE-MRI using Convolutional Neural Networks. CoRR abs/1712.07022 (2017) - 2016
- [j58]Sila Kurugol, Moti Freiman, Onur Afacan, Jeannette M. Perez-Rossello, Michael J. Callahan, Simon K. Warfield:
Spatially-constrained probability distribution model of incoherent motion (SPIM) for abdominal diffusion-weighted MRI. Medical Image Anal. 32: 173-183 (2016) - [j57]Yuanyuan Jia, Zhongshi He, Ali Gholipour, Simon K. Warfield:
Single Anisotropic 3-D MR Image Upsampling via Overcomplete Dictionary Trained From In-Plane High Resolution Slices. IEEE J. Biomed. Health Informatics 20(6): 1552-1561 (2016) - [j56]Bahram Marami, Benoit Scherrer, Onur Afacan, Burak Erem, Simon K. Warfield, Ali Gholipour:
Motion-Robust Diffusion-Weighted Brain MRI Reconstruction Through Slice-Level Registration-Based Motion Tracking. IEEE Trans. Medical Imaging 35(10): 2258-2269 (2016) - [c150]Damon E. Hyde, Moritz Dannhauer, Simon K. Warfield, Rob S. MacLeod, Dana H. Brooks:
Evaluation of numerical techniques for solving the current injection problem in biological tissues. ISBI 2016: 876-880 - [c149]Bahram Marami, Benoit Scherrer, Onur Afacan, Simon K. Warfield, Ali Gholipour:
Motion-Robust Reconstruction Based on Simultaneous Multi-slice Registration for Diffusion-Weighted MRI of Moving Subjects. MICCAI (3) 2016: 544-552 - [c148]Aymeric Stamm, Olivier Commowick, Simon K. Warfield, Simone Vantini:
Comprehensive Maximum Likelihood Estimation of Diffusion Compartment Models Towards Reliable Mapping of Brain Microstructure. MICCAI (3) 2016: 622-630 - 2015
- [j55]Maxime Taquet, Benoit Scherrer, Nicolas Boumal, Jurriaan M. Peters, Benoît Macq, Simon K. Warfield:
Improved fidelity of brain microstructure mapping from single-shell diffusion MRI. Medical Image Anal. 26(1): 268-286 (2015) - [j54]Subrahmanyam Gorthi, Alireza Akhondi Asl, Simon K. Warfield:
Optimal MAP Parameters Estimation in STAPLE Using Local Intensity Similarity Information. IEEE J. Biomed. Health Informatics 19(5): 1589-1597 (2015) - [j53]Xavier Tomas-Fernandez, Simon K. Warfield:
A Model of Population and Subject (MOPS) Intensities With Application to Multiple Sclerosis Lesion Segmentation. IEEE Trans. Medical Imaging 34(6): 1349-1361 (2015) - [c147]Benoit Scherrer, Onur Afacan, Maxime Taquet, Sanjay P. Prabhu, Ali Gholipour, Simon K. Warfield:
Accelerated High Spatial Resolution Diffusion-Weighted Imaging. IPMI 2015: 69-81 - [c146]Vahid Taimouri, Ali Gholipour, Clemente Velasco-Annis, Judy A. Estroff, Simon K. Warfield:
A template-to-slice block matching approach for automatic localization of brain in fetal MRI. ISBI 2015: 144-147 - [c145]Burak Erem, Damon Hyde, Jurriaan M. Peters, Frank H. Duffy, Dana H. Brooks, Simon K. Warfield:
Combined delay and graph embedding of epileptic discharges in EEG reveals complex and recurrent nonlinear dynamics. ISBI 2015: 347-350 - [c144]Vahid Taimouri, Sila Kurugol, Sean Clancy, Moti Freiman, Simon K. Warfield:
Structural and diffusion weighted MRI registration for biomarker fusion in Crohn's disease diagnosis. ISBI 2015: 592-595 - [c143]Renaud Hédouin, Olivier Commowick, Maxime Taquet, Elise Bannier, Benoit Scherrer, Simon K. Warfield, Christian Barillot:
Symmetric block-matching registration for the distortion correction of Echo-Planar images. ISBI 2015: 717-720 - [c142]Sila Kurugol, Moti Freiman, Onur Afacan, Liran Domachevsky, Jeannette M. Perez-Rossello, Michael J. Callahan, Simon K. Warfield:
Motion Compensated Abdominal Diffusion Weighted MRI by Simultaneous Image Registration and Model Estimation (SIR-ME). MICCAI (3) 2015: 501-509 - [c141]Aymeric Stamm, Jolene Singh, Onur Afacan, Simon K. Warfield:
Analytic Quantification of Bias and Variance of Coil Sensitivity Profile Estimators for Improved Image Reconstruction in MRI. MICCAI (2) 2015: 684-691 - [c140]Aymeric Stamm, Jolene Singh, Benoît Scherrer, Onur Afacan, Simon K. Warfield:
Multi-session complex averaging for high resolution high SNR 3T MR visualization of ex vivo hippocampus and insula. Image Processing 2015: 941328 - [p1]Maxime Taquet, Benoit Scherrer, Simon K. Warfield:
A Framework for the Analysis of Diffusion Compartment Imaging (DCI). Visualization and Processing of Higher Order Descriptors for Multi-Valued Data 2015: 271-297 - 2014
- [j52]Vahid Taimouri, Alireza Akhondi Asl, Xavier Tomas-Fernandez, Jurriaan M. Peters, Sanjay P. Prabhu, Annapurna Poduri, Masan