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2020 – today
- 2022
[j36]Thomas R. Campion Jr.
, Evan Sholle, Jyotishman Pathak, Stephen B. Johnson, John P. Leonard, Curtis L. Cole:
An architecture for research computing in health to support clinical and translational investigators with electronic patient data. J. Am. Medical Informatics Assoc. 29(4): 677-685 (2022)- 2021
- [j35]Suzanne Morrison Cox, Stephen B. Johnson, Eva Shiu, Sue Boren:
The national landscape of culminating experiences in master's programs in health and biomedical informatics. J. Am. Medical Informatics Assoc. 28(4): 856-861 (2021) - 2020
- [c52]Juan D. Irizarry-Cole, Stephen B. Johnson, Zane Dennis:
The Impact of Model and Tokenization Method Selection on a Deep Learning Classifier on Medical Text. AMIA 2020
2010 – 2019
- 2019
- [j34]Edward Balaban, Stephen B. Johnson, Mykel J. Kochenderfer:
Unifying System Health Management and Automated Decision Making. J. Artif. Intell. Res. 65: 487-518 (2019) - [j33]Evan Sholle, Laura C. Pinheiro, Prakash Adekkanattu, Marcos Davila, Stephen B. Johnson, Jyotishman Pathak, Sanjai Sinha, Cassidie Li, Stasi A Lubansky, Monika M. Safford, Thomas R. Campion Jr.:
Underserved populations with missing race ethnicity data differ significantly from those with structured race/ethnicity documentation. J. Am. Medical Informatics Assoc. 26(8-9): 722-729 (2019) - [c51]Stephen B. Johnson, Saif S. Khairat, Suzanne Austin Boren, Vishnu Mohan, Eva LaVerne Manos, William R. Hersh:
Educational Communities in the Academic Forum: Sharing Knowledge and Promoting Standards. AMIA 2019 - [i1]Edward Balaban, Stephen B. Johnson, Mykel J. Kochenderfer:
Rethinking System Health Management. CoRR abs/1903.03948 (2019) - 2018
- [j32]Annette L. Valenta, Eta S. Berner, Suzanne Austin Boren, Gloria J. Deckard, Christina Eldredge, Douglas B. Fridsma, Cynthia S. Gadd, Yang Gong, Todd R. Johnson, Josette Jones, E. LaVerne Manos, Kirk T. Phillips, Nancy K. Roderer, Douglas Rosendale, Anne M. Turner, Günter Tusch, Jeffrey J. Williamson, Stephen B. Johnson:
AMIA Board White Paper: AMIA 2017 core competencies for applied health informatics education at the master's degree level. J. Am. Medical Informatics Assoc. 25(12): 1657-1668 (2018) - [c50]Prakash Adekkanattu, Evan Sholle, Joseph J. DeFerio, Jyotishman Pathak, Stephen B. Johnson, Thomas R. Campion Jr.:
Ascertaining Depression Severity by Extracting Patient Health Questionnaire-9 (PHQ-9) Scores from Clinical Notes. AMIA 2018 - 2017
- [j31]Lisette C. Roman, Jessica S. Ancker, Stephen B. Johnson, Yalini Senathirajah:
Navigation in the electronic health record: A review of the safety and usability literature. J. Biomed. Informatics 67: 69-79 (2017) - [c49]Evan Sholle, Joseph Kabariti, Stephen B. Johnson, John P. Leonard, Jyotishman Pathak, Vinay I. Varughese, Curtis L. Cole, Thomas R. Campion Jr.:
Secondary Use of Patients' Electronic Records (SUPER): An Approach for Meeting Specific Data Needs of Clinical and Translational Researchers. AMIA 2017 - [c48]En-Ju D. Lin, Stephen B. Johnson, Chaitanya Shivade, Peter J. Embí, Albert M. Lai:
Understanding the Role of Technology for Screening Participants in Clinical Studies. CRI 2017 - 2016
- [j30]Stephen B. Johnson, Frank J. Farach, Kevin A. Pelphrey, Leon Rozenblit:
Data management in clinical research: Synthesizing stakeholder perspectives. J. Biomed. Informatics 60: 286-293 (2016) - [c47]Jessica S. Ancker, Stephen B. Johnson:
Designing an evaluation methods course in health informatics. AMIA 2016 - 2015
- [c46]Judith J. Warren, Stephen B. Johnson, Suzanne Austin Boren, Stuart M. Speedie, Günter Tusch:
Health Informatics Graduate Program Accreditation: CAHIIM Process and Standards Update. AMIA 2015 - 2014
- [j29]Chaitanya P. Shivade, Preethi Raghavan, Eric Fosler-Lussier, Peter J. Embí, Noémie Elhadad, Stephen B. Johnson, Albert M. Lai:
A review of approaches to identifying patient phenotype cohorts using electronic health records. J. Am. Medical Informatics Assoc. 21(2): 221-230 (2014) - [j28]Stephen B. Johnson, Michael E. Bales, Daniel Dine, Suzanne Bakken, Paul J. Albert, Chunhua Weng:
Automatic generation of investigator bibliographies for institutional research networking systems. J. Biomed. Informatics 51: 8-14 (2014) - [j27]Michael E. Bales, Daniel C. Dine, Jacqueline A. Merrill, Stephen B. Johnson, Suzanne Bakken, Chunhua Weng:
Associating co-authorship patterns with publications in high-impact journals. J. Biomed. Informatics 52: 311-318 (2014) - [c45]Stephen B. Johnson, Thomas R. Campion Jr., Nonie E. Pegoraro, Leon Rozenblit, Charles Tirrell, Curt Cole:
An Institutional Strategy to Support Clinical Research with Centrally Managed Custom Data Repositories. AMIA 2014 - [c44]Chunhua Weng, Philip R. O. Payne, Mark Velez, Stephen B. Johnson, Suzanne Bakken:
Towards Symbiosis in Knowledge Representation and Natural Language Processing for Structuring Clinical Practice Guidelines. Nursing Informatics 2014: 461-469 - 2013
- [j26]Thomas R. Campion Jr., Alison Edwards, Stephen B. Johnson, Rainu Kaushal:
Health information exchange system usage patterns in three communities: Practice sites, users, patients, and data. Int. J. Medical Informatics 82(9): 810-820 (2013) - 2012
- [c43]Thomas R. Campion Jr., Lisa M. Kern, Alison Edwards, Renny Thomas, Stephen B. Johnson, Rainu Kaushal:
Barriers to and Facilitators of Community-Based Health Information Technology Implementation. AMIA 2012 - 2011
- [j25]Chunhua Weng, Xiaoying Wu, Zhihui Luo, Mary Regina Boland, Dimitri Theodoratos, Stephen B. Johnson:
EliXR: an approach to eligibility criteria extraction and representation. J. Am. Medical Informatics Assoc. 18(Supplement): 116-124 (2011) - [c42]David R. Kaufman, Patrick Cronin, Leon Rozenblit, David Voccola, Amanda Horton, Alisabeth Shine, Stephen B. Johnson:
Facilitating the Iterative Design of Informatics Tools to Advance the Science of Autism. MIE 2011: 955-959 - 2010
- [j24]Stephen B. Johnson, Glen Whitney, Matthew J. McAuliffe, Hailong Wang, Evan S. McCreedy, Leon Rozenblit, Clark C. Evans:
Using global unique identifiers to link autism collections. J. Am. Medical Informatics Assoc. 17(6): 689-695 (2010)
2000 – 2009
- 2009
- [j23]Herbert S. Chase, David R. Kaufman, Stephen B. Johnson, Eneida A. Mendonça:
Research Paper: Voice Capture of Medical Residents' Clinical Information Needs During an Inpatient Rotation. J. Am. Medical Informatics Assoc. 16(3): 387-394 (2009) - [j22]Sookyung Hyun, Jason S. Shapiro, Genevieve B. Melton, Cara Schlegel, Peter D. Stetson, Stephen B. Johnson, Suzanne Bakken:
Case Report: Iterative Evaluation of the Health Level 7 - Logical Observation Identifiers Names and Codes Clinical Document Ontology for Representing Clinical Document Names: A Case Report. J. Am. Medical Informatics Assoc. 16(3): 395-399 (2009) - [j21]Sookyung Hyun, Stephen B. Johnson, Peter D. Stetson, Suzanne Bakken:
Development and evaluation of nursing user interface screens using multiple methods. J. Biomed. Informatics 42(6): 1004-1012 (2009) - [c41]Michael E. Bales, David R. Kaufman, Stephen B. Johnson:
Evaluation of a Prototype Search and Visualization System for Exploring Scientific Communities. AMIA 2009 - 2008
- [j20]Stephen B. Johnson, Suzanne Bakken, Daniel Dine, Sookyung Hyun, Eneida A. Mendonça, Frances P. Morrison, Tiffani J. Bright, Tielman Van Vleck, Jesse O. Wrenn, Peter D. Stetson:
Model Formulation: An Electronic Health Record Based on Structured Narrative. J. Am. Medical Informatics Assoc. 15(1): 54-64 (2008) - [j19]Peter D. Stetson, Frances P. Morrison, Suzanne Bakken, Stephen B. Johnson:
Research Paper: Preliminary Development of the Physician Documentation Quality Instrument. J. Am. Medical Informatics Assoc. 15(4): 534-541 (2008) - [j18]Peter W. Hung, Stephen B. Johnson, David R. Kaufman, Eneida A. Mendonça:
A multi-level model of information seeking in the clinical domain. J. Biomed. Informatics 41(2): 357-370 (2008) - [c40]Sharib A. Khan, Rita Kukafka, J. Thomas Bigger, Stephen B. Johnson:
Re-engineering Opportunities in Clinical Research using Workflow Analysis in Community Practice Settings. AMIA 2008 - [c39]Tielman Van Vleck, Adam B. Wilcox, Peter D. Stetson, Stephen B. Johnson, Noémie Elhadad:
Content and Structure of Clinical Problem Lists: A Corpus Analysis. AMIA 2008 - 2007
- [j17]Michael E. Bales, Yves A. Lussier, Stephen B. Johnson:
Research Paper: Topological Analysis of Large-scale Biomedical Terminology Structures. J. Am. Medical Informatics Assoc. 14(6): 788-797 (2007) - [j16]Stephen B. Johnson, Richard A. Friedman:
Bridging the gap between biological and clinical informatics in a graduate training program. J. Biomed. Informatics 40(1): 59-66 (2007) - [j15]Philip R. O. Payne, Eneida A. Mendonça, Stephen B. Johnson, Justin Starren:
Conceptual knowledge acquisition in biomedicine: A methodological review. J. Biomed. Informatics 40(5): 582-602 (2007) - [c38]Daniel M. Stein, Jesse O. Wrenn, Stephen B. Johnson, Peter D. Stetson:
Signout: A Collaborative Document with Implications for the Future of Clinical Information Systems. AMIA 2007 - [c37]Tielman Van Vleck, Daniel M. Stein, Peter D. Stetson, Stephen B. Johnson:
Assessing Data Relevance For Automated Generation Of A Clinical Summary. AMIA 2007 - [c36]Jesse O. Wrenn, Peter D. Stetson, Stephen B. Johnson:
An Unsupervised Machine Learning Approach to Segmentation of Clinician-Entered Free Text. AMIA 2007 - [c35]Sharib A. Khan, Rita Kukafka, Philip R. O. Payne, J. Thomas Bigger, Stephen B. Johnson:
A Day in the Life of a Clinical Research Coordinator: Observations from Community Practice Settings. MedInfo 2007: 247-251 - 2006
- [j14]Michael E. Bales, Stephen B. Johnson:
Graph theoretic modeling of large-scale semantic networks. J. Biomed. Informatics 39(4): 451-464 (2006) - [c34]Tiffani J. Bright, Suzanne Bakken, Stephen B. Johnson:
Heuristic Evaluation of eNote: an Electronic Notes System. AMIA 2006 - [c33]Sharib A. Khan, Philip R. O. Payne, Stephen B. Johnson, J. Thomas Bigger, Rita Kukafka:
Modeling Clinical Trials Workflow in Community Practice Settings. AMIA 2006 - 2005
- [j13]Suzanne Bakken, Sookyung Hyun, Carol Friedman, Stephen B. Johnson:
ISO reference terminology models for nursing: Applicability for natural language processing of nursing narratives. Int. J. Medical Informatics 74(7-8): 615-622 (2005) - [j12]George Hripcsak, Li Zhou, Simon Parsons, Amar K. Das, Stephen B. Johnson:
Model Formulation: Modeling Electronic Discharge Summaries as a Simple Temporal Constraint Satisfaction Problem. J. Am. Medical Informatics Assoc. 12(1): 55-63 (2005) - [c32]Janet P. Haas, Suzanne Bakken, Tiffani J. Bright, Genevieve B. Melton, Peter D. Stetson, Stephen B. Johnson:
Clinicians' Perceptions of Usability of eNote. AMIA 2005 - [c31]Frances P. Morrison, Rita Kukafka, Stephen B. Johnson:
Analyzing the Structure and Content of Public Health Messages. AMIA 2005 - [c30]Jason S. Shapiro, Suzanne Bakken, Sookyung Hyun, Genevieve B. Melton, Cara Schlegel, Stephen B. Johnson:
Document Ontology: Supporting Narrative Documents in Electronic Health Records. AMIA 2005 - 2004
- [c29]Rita Kukafka, Frances P. Morrison, Stephen B. Johnson:
Integrating Public Health and Computer Science Theoretical Perspectives for Developing Tailored Health Messages. AAAI Technical Report (4) 2004: 71-77 - [c28]Yoon-Ho Seol, David R. Kaufman, Eneida A. Mendonça, James J. Cimino, Stephen B. Johnson:
Scenario-based Assessment of Physicians' Information Needs. MedInfo 2004: 306-310 - [c27]Suzanne Bakken, Sookyung Hyun, Carol Friedman, Stephen B. Johnson:
A Comparison of Semantic Categories of the ISO Reference Terminology Models for Nursing and the MedLEE Natural Language Processing System. MedInfo 2004: 472-476 - 2003
- [j11]Rita Kukafka, Stephen B. Johnson, Allison Linfante, John P. Allegrante:
Grounding a new information technology implementation framework in behavioral science: a systematic analysis of the literature on IT use. J. Biomed. Informatics 36(3): 218-227 (2003) - [c26]Sookyung Hyun, Suzanne Bakken, Carol Friedman, Stephen B. Johnson:
Natural Language Processing Challenges in HIV/AIDS Clinic Notes. AMIA 2003 - [c25]Stephen B. Johnson:
A Framework for the Biomedical Informatics Curriculum. AMIA 2003 - [c24]Stephen B. Johnson, David A. Campbell, Michael Krauthammer, P. Karina Tulipano, Eneida A. Mendonça, Carol Friedman, George Hripcsak:
A Native XML Database Design for Clinical Document Research. AMIA 2003 - [c23]Shamim Mollah, Stephen B. Johnson:
Automatic Learning of the Morphology of Medical Language using Information Compression. AMIA 2003 - 2002
- [j10]Hongfang Liu, Stephen B. Johnson, Carol Friedman:
Research Paper: Automatic Resolution of Ambiguous Terms Based on Machine Learning and Conceptual Relations in the UMLS. J. Am. Medical Informatics Assoc. 9(6): 621-636 (2002) - [c22]David A. Campbell, Stephen B. Johnson:
A transformational-based learner for dependency grammars in discharge summaries. ACL Workshop on Natural Language Processing in the Biomedical Domain 2002: 37-44 - [c21]Eneida A. Mendonça, Stephen B. Johnson, Yoon-Ho Seol, James J. Cimino:
Analyzing the Semantics of patient data to rank records of literature retrieval. ACL Workshop on Natural Language Processing in the Biomedical Domain 2002: 69-76 - [c20]Michael Krauthammer, Stephen B. Johnson, George Hripcsak, David A. Campbell, Carol Friedman:
Representing nested semantic information in a linear string of text using XML. AMIA 2002 - [c19]Eneida A. Mendonça, James J. Cimino, Stephen B. Johnson:
Using Patient Data to Rank Records of Literature Retrieval. AMIA 2002 - [c18]Yoon-Ho Seol, Stephen B. Johnson, James J. Cimino:
Knowledge Acquisition of Generic Queries for Information Retrieval. AMIA 2002 - [c17]Peter D. Stetson, Stephen B. Johnson, Matthew Scotch, George Hripcsak:
The sublanguage of cross-coverage. AMIA 2002 - [c16]Di Wang, David R. Kaufman, Eneida A. Mendonça, Yoon-Ho Seol, Stephen B. Johnson, James J. Cimino:
The cognitive demands of an innovative query user interface. AMIA 2002 - 2001
- [j9]Eneida A. Mendonça, James J. Cimino, Stephen B. Johnson, Yoon-Ho Seol:
Accessing Heterogeneous Sources of Evidence to Answer Clinical Questions. J. Biomed. Informatics 34(2): 85-98 (2001) - [c15]David A. Campbell, Stephen B. Johnson:
Comparing syntactic complexity in medical and non-medical corpora. AMIA 2001 - [c14]Carol Friedman, Hongfang Liu, Lyudmila Shagina, Stephen B. Johnson, George Hripcsak:
Evaluating the UMLS as a source of lexical knowledge for medical language processing. AMIA 2001 - [c13]Eneida A. Mendonça, James J. Cimino, Stephen B. Johnson:
Using narrative reports to support a digital library. AMIA 2001 - [c12]Yoon-Ho Seol, Stephen B. Johnson, James J. Cimino:
Conceptual Guidance in Information Retrieval. AMIA 2001 - [c11]Andrey Rzhetsky, Michael Krauthammer, Tomohiro Koike, Pauline Kra, Shawn M. Gomez, Hong Yu, Pablo Ariel Duboué, Wubin Weng, Stephen B. Johnson, Vasileios Hatzivassiloglou, Carol Friedman:
GeneWays: A System for Mining Text and for Integrating Data on Molecular Pathways. German Conference on Bioinformatics 2001: 2-5 - [c10]Robert H. Baud, Stephen B. Johnson, Christopher G. Chute, Olivier Bodenreider, Jeremy Rogers, Anita Burgun:
Natural Language Processing, Medical Terminologies, and Ontological Issues for Patient Records and Biomedical Knowledge. MedInfo 2001: 1533 - 2000
- [j8]Justin Starren, Stephen B. Johnson:
Review: An Object-oriented Taxonomy of Medical Data Presentations. J. Am. Medical Informatics Assoc. 7(1): 1-20 (2000) - [c9]Jinsong Cai, Stephen B. Johnson, George Hripcsak:
Generic data modeling for home telemonitoring of chronically ill patients. AMIA 2000 - [c8]Michael Krauthammer, Nina Wacholder, Stephen B. Johnson, Gai Elhanan, Pat Molholt:
Knowledge Sharing in the Construction of an Anatomical Navigational Ontology. AMIA 2000
1990 – 1999
- 1999
- [j7]Stephen B. Johnson:
Research Paper: A Semantic Lexicon for Medical Language Processing. J. Am. Medical Informatics Assoc. 6(3): 205-218 (1999) - [j6]Fred M. Behlen, Stephen B. Johnson:
White Paper: Multicenter Patient Records Research: Security Policies and Tools. J. Am. Medical Informatics Assoc. 6(6): 435-443 (1999) - [c7]Fred M. Behlen, Stephen B. Johnson:
Security architecture for multi-site patient records research. AMIA 1999 - [c6]David A. Campbell, Stephen B. Johnson:
A technique for semantic classification of unknown words using UMLS resources. AMIA 1999 - [c5]Stephen B. Johnson, Damianos Chatziantoniou:
Extended SQL for manipulating clinical warehouse data. AMIA 1999 - [c4]Yoon-Ho Seol, Stephen B. Johnson, Justin B. Starren:
Use of the Extensible Stylesheet Language (XSL) for medical data transformation. AMIA 1999 - [c3]Justin Starren, Stephen B. Johnson:
New Dogs for Old Tricks: Finite State Modeling and XML for Access to Legacy Systems. AMIA 1999 - 1997
- [c2]Stephen B. Johnson, T. Paul, A. Khenina:
Generic database design for patient management information. AMIA 1997 - 1996
- [j5]Stephen B. Johnson:
Model Formulation: Generic Data Modeling for Clinical Rrepositories. J. Am. Medical Informatics Assoc. 3(5): 328-339 (1996) - 1995
- [j4]Carol Friedman, George Hripcsak, William DuMouchel, Stephen B. Johnson, Paul D. Clayton:
Natural language processing in an operational clinical information system. Nat. Lang. Eng. 1(1): 83-108 (1995) - [c1]William DuMouchel, Carol Friedman, George Hripcsak, Stephen B. Johnson, Paul D. Clayton:
Two Applications of Statistical Modelling to Natural Language Processing. AISTATS 1995: 413-421 - 1994
- [j3]James J. Cimino, Paul D. Clayton, George Hripcsak, Stephen B. Johnson:
Research Paper: Knowledge-based Approaches to the Maintenance of a Large Controlled Medical Terminology. J. Am. Medical Informatics Assoc. 1(1): 35-50 (1994) - [j2]Carol Friedman, Philip O. Alderson, John H. M. Austin, James J. Cimino, Stephen B. Johnson:
Research Paper: A General Natural-language Text Processor for Clinical Radiology. J. Am. Medical Informatics Assoc. 1(2): 161-174 (1994) - [j1]Carol Friedman, James J. Cimino, Stephen B. Johnson:
Research Paper: A Schema for Representing Medical Language Applied to Clinical Radiology. J. Am. Medical Informatics Assoc. 1(3): 233-248 (1994)
1980 – 1989
- 1987
- [b1]Stephen B. Johnson:
An Analyzer for the Information Content of Sentences (Semantics). New York University, USA, 1987
Coauthor Index
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