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Jan Aerts
Person information
- affiliation: KU Leuven, Department of Electrical Engineering, The Netherlands
- affiliation: Amador Biosciences, Hasselt, Begium
- affiliation (former): Hasselt University, Hasselt, Begium
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2020 – today
- 2024
- [j26]Jannes Peeters, Daniël M. Bot, Gustavo Alberto Rovelo Ruiz, Jan Aerts
:
Snowflake: visualizing microbiome abundance tables as multivariate bipartite graphs. Frontiers Bioinform. 4 (2024) - [j25]Benjamin Bach
, Mandy Keck
, Fateme Rajabiyazdi
, Tatiana Losev
, Isabel Meirelles
, Jason Dykes
, Robert S. Laramee
, Mashael AlKadi, Christina Stoiber
, Samuel Huron
, Charles Perin
, Luiz Morais
, Wolfgang Aigner
, Doris Kosminsky
, Magdalena Boucher
, Søren Knudsen
, Areti Manataki
, Jan Aerts
, Uta Hinrichs
, Jonathan C. Roberts
, Sheelagh Carpendale
:
Challenges and Opportunities in Data Visualization Education: A Call to Action. IEEE Trans. Vis. Comput. Graph. 30(1): 649-660 (2024) - [i6]Daniël M. Bot, Jan Aerts:
Lens functions for exploring UMAP Projections with Domain Knowledge. CoRR abs/2405.09204 (2024) - 2023
- [c12]Daniël M. Bot, Jannes Peeters, Jan Aerts:
The Challenge of Branch-Aware Data Manifold Exploration. EuroVis (Posters) 2023: 73-75 - [i5]Benjamin Bach, Mandy Keck, Fateme Rajabiyazdi, Tatiana Losev, Isabel Meirelles, Jason Dykes, Robert S. Laramee, Mashael AlKadi, Christina Stoiber, Samuel Huron, Charles Perin, Luiz Morais
, Wolfgang Aigner, Doris Kosminsky, Magdalena Boucher, Søren Knudsen, Areti Manataki, Jan Aerts, Uta Hinrichs, Jonathan C. Roberts, Sheelagh Carpendale:
Challenges and Opportunities in Data Visualization Education: A Call to Action. CoRR abs/2308.07703 (2023) - [i4]Daniël M. Bot, Jannes Peeters, Jori Liesenborgs, Jan Aerts
:
FLASC: A Flare-Sensitive Clustering Algorithm: Extending HDBSCAN* for Detecting Branches in Clusters. CoRR abs/2311.15887 (2023) - 2022
- [j24]Georgia Panagiotidou
, Jeroen Poblome
, Jan Aerts
, Andrew Vande Moere
:
Designing a Data Visualisation for Interdisciplinary Scientists. How to Transparently Convey Data Frictions? Comput. Support. Cooperative Work. 31(4): 633-667 (2022) - [c11]Dries Heylen, Jannes Peeters, Gökhan Ertaylan, Jef Hooyberghs, Jan Aerts:
MOBS - Multi-Omics Brush for Subgraph Visualisation. EuroVis (Posters) 2022: 43-45 - 2021
- [j23]Jan Aerts
, Jannes Peeters
, Jelmer Bot
, Danai Kafetzaki
, Houda Lamqaddam
:
Remote Instruction for Data Visualization Design - A Report From the Trenches. IEEE Computer Graphics and Applications 41(6): 15-24 (2021) - [j22]Jannes Peeters
, Olivier Thas, Ziv Shkedy, Leyla Kodalci, Connie Musisi, Olajumoke Evangelina Owokotomo, Aleksandra Dyczko, Ibrahim Hamad, Jaco Vangronsveld, Markus Kleinewietfeld
, Sofie Thijs, Jan Aerts
:
Exploring the Microbiome Analysis and Visualization Landscape. Frontiers Bioinform. 1 (2021) - [j21]Daniel Alcaide
, Jan Aerts
:
A visual analytic approach for the identification of ICU patient subpopulations using ICD diagnostic codes. PeerJ Comput. Sci. 7: e430 (2021) - [j20]Daniel Alcaide
, Jan Aerts
:
Spanning Trees as Approximation of Data Structures. IEEE Trans. Vis. Comput. Graph. 27(10): 3994-4008 (2021) - [c10]Robin De Croon
, Artuur Leeuwenberg, Jan Aerts
, Marie-Francine Moens, Vero Vanden Abeele
, Katrien Verbert
:
TIEVis: a Visual Analytics Dashboard for Temporal Information Extracted from Clinical Reports. IUI Companion 2021: 34-36
2010 – 2019
- 2019
- [j19]Thomas Moerman, Sara Aibar Santos
, Carmen Bravo González-Blas
, Jaak Simm, Yves Moreau
, Jan Aerts
, Stein Aerts
:
GRNBoost2 and Arboreto: efficient and scalable inference of gene regulatory networks. Bioinform. 35(12): 2159-2161 (2019) - [i3]Daniel Alcaide, Jan Aerts:
Improving the Projection of Global Structures in Data through Spanning Trees. CoRR abs/1907.05783 (2019) - 2018
- [j18]Daniel Alcaide, Jan Aerts
:
MCLEAN: Multilevel Clustering Exploration As Network. PeerJ Comput. Sci. 4: e145 (2018) - [c9]Daniel Alcaide, Jan Aerts
:
Multilevel Visual Clustering Exploration for Incomplete Time-Series in Water Samples. VAST 2018: 116-117 - [c8]Houda Lamqaddam
, Jan Aerts
, Koenraad Brosens, Katrien Verbert
:
NAHR: a visual representation of social networks as support for art history research. NordiCHI 2018: 634-641 - [i2]Jan Aerts, Nils Gehlenborg, Georgeta Elisabeta Marai, Kay Katja Nieselt:
Visualization of Biological Data - Crossroads (Dagstuhl Seminar 18161). Dagstuhl Reports 8(4): 32-71 (2018) - 2017
- [c7]Daniel Alcaide, Jan Aerts:
DaaG: Visual Analytics Clustering Using Network Representation. EuroVis (Posters) 2017: 61-63 - [c6]Thomas De Bodt, Bart Adams, Jan Aerts:
Interactive Visualization of Massive Location Data using Multi-Scale Trajectories. EuroVis (Posters) 2017: 65-67 - [i1]Daniel Alcaide
, Jan Aerts
:
MCLEAN: Multilevel Clustering Exploration As Network. PeerJ Prepr. 5: e3448 (2017) - 2016
- [j17]Léon-Charles Tranchevent
, Amin Ardeshirdavani
, Sarah ElShal, Daniel Alcaide, Jan Aerts
, Didier Auboeuf
, Yves Moreau
:
Candidate gene prioritization with Endeavour. Nucleic Acids Res. 44(Webserver-Issue): W117-W121 (2016) - [c5]Houda Lamqaddam, Jan Aerts:
InVITe - Towards Intuitive Visualization of Iterations over Text. EuroVis (Posters) 2016: 57-59 - 2015
- [j16]Jan Aerts
, G. Elisabeta Marai, Kay Nieselt, Cydney B. Nielsen, Marc Streit
, Daniel Weiskopf:
Highlights from the 5th Symposium on Biological Data Visualization: Part 1. BMC Bioinform. 16(S11): S1 (2015) - [c4]Ryo Sakai, Jan Aerts:
Card Sorting Techniques for Domain Characterization in Problem-driven Visualization Research. EuroVis (Short Papers) 2015: 121-125 - 2014
- [j15]Toshiaki Katayama, Mark D. Wilkinson
, Kiyoko F. Aoki-Kinoshita
, Shuichi Kawashima
, Yasunori Yamamoto, Atsuko Yamaguchi
, Shinobu Okamoto, Shin Kawano
, Jin-Dong Kim, Yue Wang, Hongyan Wu, Yoshinobu Kano
, Hiromasa Ono
, Hidemasa Bono
, Simon Kocbek, Jan Aerts
, Yukie Akune, Erick Antezana
, Kazuharu Arakawa
, Bruno Aranda, Joachim Baran, Jerven T. Bolleman
, Raoul Jean Pierre Bonnal
, Pier Luigi Buttigieg
, Matthew P. Campbell
, Yi-an Chen, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Alexandru Constantin:
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. J. Biomed. Semant. 5: 5 (2014) - [c3]Dusan Popovic, Charalampos N. Moschopoulos, Ryo Sakai, Alejandro Sifrim
, Jan Aerts
, Yves Moreau
, Bart De Moor:
A Self-Tuning Genetic Algorithm with Applications in Biomarker Discovery. CBMS 2014: 233-238 - [c2]Alvin Chua, Ryo Sakai, Jan Aerts
, Andrew Vande Moere
:
A three step process to design visualisations for GeoTemporal analysis (VAST 2014 Mini Challenge 2). IEEE VAST 2014: 349-350 - 2013
- [j14]Georgios A. Pavlopoulos
, Anastasis Oulas
, Ernesto Iacucci, Alejandro Sifrim
, Yves Moreau
, Reinhard Schneider
, Jan Aerts
, Ioannis Iliopoulos:
Unraveling genomic variation from next generation sequencing data. BioData Min. 6: 13 (2013) - [j13]Ryo Sakai, Alejandro Sifrim
, Andrew Vande Moere
, Jan Aerts
:
TrioVis: a visualization approach for filtering genomic variants of parent-child trios. Bioinform. 29(14): 1801-1802 (2013) - [j12]Ryo Sakai, Matthieu Moisse
, Joke Reumers
, Jan Aerts
:
Pipit: visualizing functional impacts of structural variations. Bioinform. 29(17): 2206-2207 (2013) - 2012
- [j11]Raoul Jean Pierre Bonnal
, Jan Aerts
, George Githinji
, Naohisa Goto, Daniel MacLean
, Chase A. Miller, Hiroyuki Mishima
, Massimiliano Pagani
, Ricardo Ramirez-Gonzalez
, Geert Smant, Francesco Strozzi
, Rob Syme
, Rutger A. Vos
, Trevor J. Wennblom, Ben J. Woodcroft
, Toshiaki Katayama, Pjotr Prins
:
Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics. Bioinform. 28(7): 1035-1037 (2012) - [j10]Maria Secrier
, Georgios A. Pavlopoulos
, Jan Aerts
, Reinhard Schneider
:
Arena3D: visualizing time-driven phenotypic differences in biological systems. BMC Bioinform. 13: 45 (2012) - [j9]Hiroyuki Mishima
, Jan Aerts
, Toshiaki Katayama, Raoul Jean Pierre Bonnal
, Koh-ichiro Yoshiura:
The Ruby UCSC API: accessing the UCSC genome database using Ruby. BMC Bioinform. 13: 240 (2012) - [j8]Christopher W. Bartlett
, Soo Yeon Cheong, Liping Hou
, Jesse Paquette, Pek Yee Lum, Günter Jäger, Florian Battke
, Corinna Vehlow, Julian Heinrich, Kay Nieselt
, Ryo Sakai, Jan Aerts
, William C. Ray
:
An eQTL biological data visualization challenge and approaches from the visualization community. BMC Bioinform. 13(S-8): S8 (2012) - [j7]Cameron Neylon
, Jan Aerts
, C. Titus Brown
, Simon J. Coles
, Les Hatton, Daniel Lemire, K. Jarrod Millman
, Peter Murray-Rust
, Fernando Pérez, Neil F. W. Saunders
, Nigam Shah, Arfon M. Smith
, Gaël Varoquaux
, Egon L. Willighagen
:
Changing computational research. The challenges ahead. Source Code Biol. Medicine 7: 2 (2012) - [c1]Thomas Boogaerts, Léon-Charles Tranchevent, Georgios A. Pavlopoulos
, Jan Aerts
, Joos Vandewalle:
Visualizing high dimensional datasets using parallel coordinates: Application to gene prioritization. BIBE 2012: 52-57 - 2011
- [j6]Georgios A. Pavlopoulos
, Maria Secrier
, Charalampos N. Moschopoulos, Theodoros G. Soldatos
, Sophia Kossida, Jan Aerts
, Reinhard Schneider
, Pantelis G. Bagos
:
Using graph theory to analyze biological networks. BioData Min. 4: 10 (2011) - [j5]Francesco Strozzi
, Jan Aerts
:
A Ruby API to query the Ensembl database for genomic features. Bioinform. 27(7): 1013-1014 (2011) - [j4]Toshiaki Katayama, Mark D. Wilkinson
, Rutger A. Vos
, Takeshi Kawashima, Shuichi Kawashima
, Mitsuteru Nakao, Yasunori Yamamoto, Hong-Woo Chun, Atsuko Yamaguchi
, Shin Kawano
, Jan Aerts
, Kiyoko F. Aoki-Kinoshita
, Kazuharu Arakawa
, Bruno Aranda, Raoul Jean Pierre Bonnal
, José María Fernández
, Takatomo Fujisawa, Paul M. K. Gordon, Naohisa Goto, Syed Haider, Todd W. Harris, Takashi Hatakeyama, Isaac Ho, Masumi Itoh, Arek Kasprzyk, Nobuhiro Kido, Young-Joo Kim, Akira R. Kinjo
, Fumikazu Konishi, Yulia Kovarskaya, Gregory Von Kuster, Alberto Labarga
, Vachiranee Limviphuvadh
, E. Luke McCarthy, Yasukazu Nakamura
, Yunsun Nam, Kozo Nishida
, Kunihiro Nishimura, Tatsuya Nishizawa, Soichi Ogishima, Tom Oinn, Shinobu Okamoto, Shujiro Okuda
, Keiichiro Ono, Kazuki Oshita, Keun-Joon Park, Nicholas H. Putnam
, Martin Senger, Jessica Severin, Yasumasa Shigemoto, Hideaki Sugawara, James Taylor, Oswaldo Trelles, Chisato Yamasaki, Riu Yamashita, Noriyuki Satoh, Toshihisa Takagi:
The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications. J. Biomed. Semant. 2: 4 (2011) - 2010
- [j3]Naohisa Goto, Pjotr Prins
, Mitsuteru Nakao, Raoul Jean Pierre Bonnal
, Jan Aerts
, Toshiaki Katayama:
BioRuby: bioinformatics software for the Ruby programming language. Bioinform. 26(20): 2617-2619 (2010) - [j2]Toshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F. Aoki-Kinoshita
, Yasunori Yamamoto, Atsuko Yamaguchi
, Shuichi Kawashima
, Hong-Woo Chun, Jan Aerts
, Bruno Aranda, Lord H. Barboza, Raoul Jean Pierre Bonnal
, Richard M. Bruskiewich, Jan Christian Bryne, José María Fernández
, Akira Funahashi
, Paul M. K. Gordon, Naohisa Goto, Andreas Groscurth, Alex Gutteridge
, Richard C. G. Holland
, Yoshinobu Kano
, Edward A. Kawas, Arnaud Kerhornou
, Eri Kibukawa, Akira R. Kinjo
, Michael Kuhn, Hilmar Lapp
, Heikki Lehväslaiho
, Hiroyuki Nakamura, Yasukazu Nakamura
, Tatsuya Nishizawa, Chikashi Nobata, Tamotsu Noguchi, Thomas M. Oinn, Shinobu Okamoto, Stuart Owen, Evangelos Pafilis, Matthew R. Pocock, Pjotr Prins
, René Ranzinger, Florian Reisinger, Lukasz Salwínski
, Mark J. Schreiber, Martin Senger, Yasumasa Shigemoto, Daron M. Standley, Hideaki Sugawara, Toshiyuki Tashiro, Oswaldo Trelles
, Rutger A. Vos
, Mark D. Wilkinson
, William S. York, Christian M. Zmasek
, Kiyoshi Asai, Toshihisa Takagi:
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. J. Biomed. Semant. 1: 8 (2010)
2000 – 2009
- 2009
- [j1]Jan Aerts
, Andy Law:
An introduction to scripting in Ruby for biologists. BMC Bioinform. 10 (2009)
Coauthor Index
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last updated on 2024-08-05 21:22 CEST by the dblp team
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