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ORCIDBIOCOMP 2006: Las Vegas, Nevada, USA
- Hamid R. Arabnia, Homayoun Valafar:
Proceedings of the 2006 International Conference on Bioinformatics & Computational Biology, BIOCOMP'06, Las Vegas, Nevada, USA, June 26-29, 2006. CSREA Press 2006, ISBN 1-60132-002-7
Sequence and Structure Alignment of Macro Molecules
- Xijiang Miao, Michael Bryson, Homayoun Valafar:
TALI: Protein Structure Alignment Using Backbone Torsion Angles. BIOCOMP 2006: 3-9 - Dan He, Abdullah N. Arslan:
Space-Efficient Parallel Algorithms for the Constrained Multiple Sequence Alignment Problem. BIOCOMP 2006: 10-16 - Hanno Hinsch, Artemis G. Hatzigeorgiou:
Simple Methods of Finding Short Protein Coding Sequences. BIOCOMP 2006: 17-23 - Achuthsankar S. Nair, Koshy P. Vaidyan:
Homology Modeling of Myoglobin using Adaptive Neurofuzzy Systems. BIOCOMP 2006: 24-30 - Yuan Lin, Jeff Jenness, Xiuzhen Huang:
Parameterized Computation of LCS for Two Sequences. BIOCOMP 2006: 31-40
Biomolecular Pathways and System Biology
- Yu Zhang, Zhidong Deng, Hongshan Jiang, Peifa Jia:
Dynamic Bayesian Network (DBN) with Structure Expectation Maximization (SEM) for Modeling of Gene Network from Time Series Gene Expression Data. BIOCOMP 2006: 41-47 - Feng Cui, Michael Sirotin, Victor Zhurkin:
Comparative Sequence Analysis of the p53 Response Elements Associated with Apoptosis and Cell Cycle Arrest. BIOCOMP 2006: 48-55 - Srinidhi Jayasuryan, Anil Bamezai, Vijay Gehlot:
Petri Net Based Model Of The T Cell Receptor Signaling Pathway. BIOCOMP 2006: 56-62 - Keyuan Jiang:
Data Integration with BioPAX Pathway Datasets for Automated Navigation. BIOCOMP 2006: 63-68
Phylogenetic Reconstruction and Molecular Evolution
- Jay Urbain, Nazli Goharian:
A Relational Genomics Search Engine. BIOCOMP 2006: 69-74 - Liying Cui, Feng Yue, Claude W. dePamphilis, Bernard M. E. Moret, Jijun Tang:
Inferring Ancestral Chloroplast Genomes with Inverted Repea. BIOCOMP 2006: 75-81 - John Rose, Rishi Mukhopadhyay:
Evidence for Functional Protein Fragment Homology in Viral Genome Types. BIOCOMP 2006: 82-86 - Bing Bing Zhou, Monther Tarawneh, Daniel Chu, Francis Wang, Chen Wang, Albert Y. Zomaya, Richard P. Brent:
On a New Quartet-Based Phylogeny Reconstruction Algorithm. BIOCOMP 2006: 87-93 - Luis Fernández, Fernando Arroyo, Juan Castellanos, Jorge Aurelio Tejedor, Ivan Garcia:
New Algorithms for Application of Evolution Rules based on Applicability Benchmarks. BIOCOMP 2006: 94-102
Microarray Data Analysis and Gene Expression
- Vetria L. Byrd, Tarynn Witten:
Needs Assessment for Scientific Visualization of Multivariate, High-Dimensional Microarray Data. BIOCOMP 2006: 103-109 - Rafal Kustra:
Reduced-rank Multivariate Model for Time-course Microarray Data. BIOCOMP 2006: 110-116 - Meral Unal, Ismail Cakmak, Yildiz Aydin, Aysen Yumurtaci, Ahu Altinkut, Emel Yesil, Sema Karanlik, Hikmet Budak:
Data Mining of ESTs for Genetic Improvement of Salt Tolerance in Wheat. BIOCOMP 2006: 117-124 - Hiroyuki Kuwahara, Chris J. Myers, Michael S. Samoilov:
Abstracted Stochastic Analysis of Type 1 Pili Expression in E.coli. BIOCOMP 2006: 125-134
Gene Identification and Clustering
- Longde Yin, Chun-Hsi Huang:
A Heuristic Approach to Scoring Gene Clustering Algorithms. BIOCOMP 2006: 135-141 - Cliff Han, Patrick S. G. Chain:
Finishing Repetitive Regions Automatically with Dupfinisher. BIOCOMP 2006: 142-147 - Scott F. Smith:
Acceleration of Covariance Models for Non-coding RNA Search. BIOCOMP 2006: 148-153 - Jing Zhao, Tian Xue, Boyu Yang, Kelly Williams, Alice R. Wattam, Rebecca Will, Bruce Sharp, Ron Kenyon, Oswald Crasta, Bruno W. S. Sobral:
Genome Annotation and Comparison System. BIOCOMP 2006: 154-160 - Dina Sokol, Justin Tojeira:
Filtering Tandem Repeats in DNA Sequences. BIOCOMP 2006: 161-167 - Hong Zhou, Yufang Wang, Xiao Zeng:
Fast and Complete Search of siRNA Off-target Sequences. BIOCOMP 2006: 168-171 - Atiq Islam, Khan M. Iftekharuddin, David J. Russomanno:
Marker Gene Selection Evaluation in Brain Tumor Patients Using Parallel Coordinates. BIOCOMP 2006: 172-176
Medical Diagnostic and Software Tools
- Beomjin Kim:
Automated Blood Volume Quantification from Color Doppler Images while Tracking the Conduit Motion. BIOCOMP 2006: 177-181 - Yuriy Brun, Manoj Gopalkrishnan:
Toward In Vivo Disease Diagnosis and Treatment Using DNA. BIOCOMP 2006: 182-186 - Baris Andirinli, Ali Tekin, Yasin Kapucu, I. Ilkay Boduroglu:
A Machine Learning Prototype for the Identification of Patients who are Not Likely to Respond to Medical Treatment of BPH with alpha-Blockers. BIOCOMP 2006: 187-193 - Dinesh P. Mital, Shankar Srinivasan, Syed Haque, Radhika Uppalapati:
An Artificial Neural Network based Model to Analyze Malarial Data and Predict Organ Failure. BIOCOMP 2006: 194-200 - Sebastian Guzmán, Juan Fernando Ospina:
Basic Reproductive Rate of a Spatial Epidemic Seir Model using Computer Algebra Software. BIOCOMP 2006: 201-204 - Roman Andrushkiw, Yuriy Petunin, Lyudmila Ostapchenko, Natalya Boroday, Yulia Lozovskaya, Vasiliy Chekhun, Irina Dosenko:
Computer-Aided Cytogenetic Method of Breast Cancer Diagnosis, Part I - Decision Rule. BIOCOMP 2006: 205-209 - Roman Andrushkiw, Dmitry Klyushin, Ekaterina Golubeva, Mikhail Pokoyoviy, Andrey Romanov:
Computer-Aided Cytogenetic Method of Breast Cancer Diagnosis, Part II - Test Criteria. BIOCOMP 2006: 210-216
Application of Engineering Techniques and Mathematics in Medicine
- Dawei Hong, Shushuang Man, Daniel Shain, Joseph V. Martin:
Development of Maximized Total Capillary Surface: the quater power scaling law from developmental biology perspective. BIOCOMP 2006: 217-221 - Naren Vira, Shaleen Vira:
Surgeon's Magic Wand: A Screen Pointing Interactive Method. BIOCOMP 2006: 222-228 - Mikaël Bourhis, Vincent Rodin, Gabriel Querrec:
SPiC-MAS: A Multiagent Simulation of Stochastic pi-calculus Models. BIOCOMP 2006: 229-235 - Sara Sharifi Sedeh, Reza Sharifi Sedeh, Keivan Navi:
Reducing Harmful Effects Of Road Excitations On Human Health By Designing Car Active Suspension Systems. BIOCOMP 2006: 236-241 - Reza Sharifi Sedeh, Sara Sharifi Sedeh, Keivan Navi:
Using Car Semi-Active Suspension Systems To Decrease Undesirable Effects Of Road Excitations On Human Health. BIOCOMP 2006: 242-250
Bioinformatics and Medical Informatics Software Tools
- Simon M. C. Yuen, Fu-Lai Chung, Robert Wing Pong Luk:
Fast Dictionary Lookup in Genomic Information Retrieval. BIOCOMP 2006: 251-257 - Boyu Yang, Tian Xue, Jing Zhao, Chaitanya Kommidi, Jeetendra Soneja, Jian Li, Rebecca Will, Bruce Sharp, Ron Kenyon, Oswald Crasta, Bruno W. S. Sobral:
Bioinformatics Web Services. BIOCOMP 2006: 258-264 - Patrick Bobbie, Renee Reams, Sandra Suther, C. Perry Brown:
Finding Molecular Signature of Prostate Cancer: An Algorithmic Approach. BIOCOMP 2006: 265-269 - Karol Szafranski, Molly Megraw, Martin Reczko, Artemis G. Hatzigeorgiou:
Support Vector Machines for Predicting microRNA Hairpins. BIOCOMP 2006: 270-276 - Gillian Pearce, Peter Wilson, Gill Jones, David Smith:
A Design for Software to Assist in the Rehabilitation of Stroke Patients. BIOCOMP 2006: 277-284
Prediction of Structure and Dynamics of Macro Molecules
- Shih-Yen Ku, Yuh-Jyh Hu:
A Multi-strategy Approach to Protein Structural Alphabet Design. BIOCOMP 2006: 285-291 - Nengchao Wang, Zhongjun Wang:
Study on Properties of Protein Folding Conformation Network. BIOCOMP 2006: 292-295 - Jinmiao Chen, Narendra S. Chaudhari:
Statistical Analysis of Long-Range Interactions in Proteins. BIOCOMP 2006: 296-302 - Mary Qu Yang, Jack Y. Yang:
Identification of Intrinsically Unstructured Regions in Proteins Using Primary Structure. BIOCOMP 2006: 303-309 - John Manor, Peter Salamon, James Nulton, Joseph Mahaffy, Arlette Baljon, Terrence Frey:
Membrane Remodeling and Diffusion of Cytochrome C from a Geometrically Idealized Mitochondrial Crista. BIOCOMP 2006: 310-314 - Aytug Tuncel, I. Halil Kavakli, Ozlem Keskin:
Structure Prediction of Potato Large Subunit ADP - Glucose Pyrophosphorylase. BIOCOMP 2006: 315-321 - Harry Eugene Stanley, David Teplow, Noel Lazo, Jose Borreguero, Brigita Urbanc, Alfonso Lam:
Discrete Molecular Dynamics Study of Alzheimer Amyloid B-protein (AB) Folding. BIOCOMP 2006: 322-328 - Latifa Douali, Matt Ernst, John Miller, Michel Dupuis:
Melting Free Energies of DNA Duplexes with oxidized Base Residues and Abasic sites: A Molecular Dynamics Characterization. BIOCOMP 2006: 329-337 - Keum-Young Sung:
The Use of Context-Sensitive Grammar For Modeling RNA Pseudoknots. BIOCOMP 2006: 338-344
Metablomics, Proteomic and Protein Function Prediction
- Jack Y. Yang, Mary Qu Yang:
Learning from Sequences with Determining Correlation between Transmembrane and Protein Disorder. BIOCOMP 2006: 345-351 - George C. Runger, Kelly Canter, John Twist, David Rossi, Clifford Kirkham:
X-Ray Powder Diffraction Metrics. BIOCOMP 2006: 352-359 - Jian Zhi Hu, Donald N. Rommereim, Robert A. Wind, Kevin R. Minard, Jesse A. Sears:
A Simple Approach for Obtaining High Resolution, High Sensitivity 1H NMR Metabolite Spectra of Biofluids with Limited Mass Supply. BIOCOMP 2006: 360-366 - Sunshin Kim, Chung Rhee, Jungdo Choi, Yong Je Chung, Keun Ho Ryu:
A New Algorithm to Predict the Active Sites Using Amino Acid Vectors and Biochemical features of Surface Patches. BIOCOMP 2006: 367-372
Intelligent Drug Design
- Meena K. Sakharkar, Kishore R. Sakharkar, Vincent T. K. Chow:
Fusion genes as putative microbial drug targets in H. pylori. BIOCOMP 2006: 373-377 - Muhittin Emre Özdemir, I. Halil Kavakli, Metin Türkay:
Structure-Based Design and Analysis of Cytochrome P450 Inhibitors for the Treatment of Prostate Cancer. BIOCOMP 2006: 378-384 - Xiaohua Douglas Zhang, Amy S. Espeseth, Namjin Chung, Marc Ferrer:
Evaluation of a Novel Metric for Quality Control in an RNA Interference High Throughput Screening Assay. BIOCOMP 2006: 385-390 - Marek Freindorf, Yihan Shao, Jing Kong, Thomas R. Furlani:
Combined QM/MM Studies of Binding Effect of Cytochrome P450cam to Putidaredoxin. BIOCOMP 2006: 391-398
Ontology, Semantics and Data Management Software
- Jack Horner:
Sensivitity of the maximum parsimony algorithm to missing data. BIOCOMP 2006: 399-405 - Yijie Han:
Improving the Efficiency of Sorting by Reversals. BIOCOMP 2006: 406-409 - Nicolás Guarín, Juan Ospina:
Analytical Solution of a Spatial Sir Epidemic Model with Memory Inside a Circular Habitat with Endemic Memory using CAS. BIOCOMP 2006: 410-413 - Rana Hashmy:
Mapping Biological XML DTDs Using Ontology. BIOCOMP 2006: 414-420
Algorithms and Models
- I. Derakhshan:
Nonconvulsive Status Epilepticus with an Unusual EEG: Another Look at Lateralities of Motor Control and Awareness. BIOCOMP 2006: 421-433 - Valery V. Gritsak-Groener, Julia Gritsak-Groener, Hamid R. Arabnia:
Algorithms for Computational Viral Extension - Direct and Inverse Problems. BIOCOMP 2006: 434-444
Gene Networks: Theory and Application
- Ai Li, Steve Horvath:
The Multi-Node Topological Overlap Measure For Gene Neighborhood Analysis. BIOCOMP 2006: 445-450 - Andy M. Yip, Steve Horvath:
The Generalized Topological Overlap Matrix for Detecting Modules in Gene Networks. BIOCOMP 2006: 451-457 - Wei Zhao, Paul Mischel, Marc Carlson, Bin Zhang, Stanley Nelson, Steve Horvath:
A Network-Based Gene Screening Approach For Improving the Validation Success of Microarrays. BIOCOMP 2006: 458-464 - Steve Horvath, Jun Dong, Andy M. Yip:
The Relationship Between Intramodular Connectivity and Gene Significance in Co-Expression Networks. BIOCOMP 2006: 465-471 - Frank Emmert-Streib, Matthias Dehmer:
Theoretical Bounds for the Number of Inferable Edges in Sparse Random Networks. BIOCOMP 2006: 472-476 - Frank Emmert-Streib, Matthias Dehmer, Chris Seidel:
Influence of Prior Information on the Reconstruction of the Yeast Cell Cycle from Microarray Data. BIOCOMP 2006: 477-482 - Jason E. Aten:
Learning Genetic and Gene Bayesian Networks with Hidden Variables: Bilayer Verification Algorithm. BIOCOMP 2006: 483-489 - Jing Yu, Gabriel Helmlinger, Muriel Saulnier, Anna Georgieva:
Computational Inference of Compound-induced Anti-inflammatory Effects Across Time in an Adjuvant-induced Arthritis Rat Model. BIOCOMP 2006: 490-495 - Alexander Mehler:
In Search of a Bridge Between Network Analysis in Computational Linguistics and Computational Biology - A Conceptual Note. BIOCOMP 2006: 496-502
Late Papers
- Min He, Blythe H. Devlin, Mary Markert, Marcella Sarzotti, Thomas B. Kepler:
SpA: Web-accessible Spectratype Analysis: Application to Investigate the Development of TCR Diversity in a Patient with Complete DiGeorge Syndrome. BIOCOMP 2006: 503-510 - Chi-Chiang Lee, Paul Marjoram:
Using Neural Nets to Estimate Evolutionary Parameters. BIOCOMP 2006: 511-517 - Ke Liu, Mansur H. Samadzadeh:
PAC: Progressive Alignment with Consensus Sequences. BIOCOMP 2006: 518-524 - Prashant Junankar, Dinesh P. Mital, Syed Haque, Shankar Srinivasan:
A Clinical Decision Support System For Managing Flexor Tendon Injuries. BIOCOMP 2006: 525-528 - Sukanya Manna, Cheng-Yuan Liou:
Reverse Engineering Approach in Molecular Evolution: Simulation and Case Study with Enzyme Proteins. BIOCOMP 2006: 529-533 - Bob Myers, Trevor I. Dix, Ross L. Coppel, David G. Green:
Polyome: A Learning System for Extracting Bioinformatic Data. BIOCOMP 2006: 534-540 - Cao Wei, Kazuya Sumikoshi, Tohru Terada, Shugo Nakamura, Kentaro Shimizu:
Insight of the Signal Motif of GPI-(like)-anchored Proteins by using SVM. BIOCOMP 2006: 541-546 - Joseph Gill, Legand L. Burge III, Zengjian Hu, William M. Southerland:
WebDock: A Structure-Based Drug Discovery Web Service. BIOCOMP 2006: 547-548 - Madhumita Mahalanabis, Jason Blue, Nancy Haigwood:
AminoTrack: Automating the Entry and Analysis of Mutations in Multiple Protein Sequences Using a Spreadsheet Format. BIOCOMP 2006: 549-555 - Pradeep S. Nair, Eugene John:
Performance of Sequence Alignment Bioinformatics Applications on General Purpose Processors: A Case Study. BIOCOMP 2006: 556-559 - Mohammad Anwar, Marcel Turcotte:
An Approach to Selecting Putative RNA Motifs Using MDL Principle. BIOCOMP 2006: 560-569 - Padmanabhan Mahadevan, Donald Seto:
Comparative genomics using web-based GeneOrder to determine synteny and to function as an annotation tool. BIOCOMP 2006: 566-570 - Robert Fraser, Janice I. Glasgow:
Introducing Hippy: A Visualization Tool for Understanding the alpha-Helix Pair Interface. BIOCOMP 2006: 571-
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