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ORCIDDmitrij Frishman
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Journal Articles
- 2021
[j51]Jan Zaucha
, Michael Heinzinger, A. Kulandaisamy, Evans Kataka, Óscar Llorian Salvádor, Petr Popov, Burkhard Rost, M. Michael Gromiha, Boris S. Zhorov, Dmitrij Frishman:
Mutations in transmembrane proteins: diseases, evolutionary insights, prediction and comparison with globular proteins. Briefings Bioinform. 22(3) (2021)- [j50]Anja Mösch, Dmitrij Frishman:
TCRpair: prediction of functional pairing between HLA-A*02: 01-restricted T-cell receptor α and β chains. Bioinform. 37(21): 3938-3940 (2021) - 2020
- [j49]Peter Hönigschmid, Stephan Breimann, Martina Weigl, Dmitrij Frishman:
AllesTM: predicting multiple structural features of transmembrane proteins. BMC Bioinform. 21(1): 242 (2020) - 2018
- [j48]A. Kulandaisamy, S. Binny Priya, R. Sakthivel, Svetlana Tarnovskaya, Ilya Bizin, Peter Hönigschmid, Dmitrij Frishman, M. Michael Gromiha:
MutHTP: mutations in human transmembrane proteins. Bioinform. 34(13): 2325-2326 (2018) - [j47]Hannah F. Löchel, Mona Riemenschneider, Dmitrij Frishman, Dominik Heider:
SCOTCH: subtype A coreceptor tropism classification in HIV-1. Bioinform. 34(15): 2575-2580 (2018) - [j46]Fei Qi, Magdalena Motz, Kirsten Jung, Jürgen Lassak, Dmitrij Frishman:
Evolutionary analysis of polyproline motifs in Escherichia coli reveals their regulatory role in translation. PLoS Comput. Biol. 14(2) (2018) - 2017
- [j45]Victor Jaravine, Silke Raffegerst, Dolores J. Schendel, Dmitrij Frishman:
Assessment of cancer and virus antigens for cross-reactivity in human tissues. Bioinform. 33(1): 104-111 (2017) - 2015
- [j44]Kerstin Haase, Silke Raffegerst, Dolores J. Schendel, Dmitrij Frishman:
Expitope: a web server for epitope expression. Bioinform. 31(11): 1854-1856 (2015) - [j43]David M. Kristensen, Usman Saeed, Dmitrij Frishman, Eugene V. Koonin:
A census of α-helical membrane proteins in double-stranded DNA viruses infecting bacteria and archaea. BMC Bioinform. 16: 380:1-380:11 (2015) - 2014
- [j42]Manja Marz, Niko Beerenwinkel, Christian Drosten, Markus Fricke, Dmitrij Frishman, Ivo L. Hofacker, Dieter Hoffmann, Martin Middendorf, Thomas Rattei, Peter F. Stadler, Armin Töpfer:
Challenges in RNA virus bioinformatics. Bioinform. 30(13): 1793-1799 (2014) - [j41]Philipp Blohm, Goar Frishman, Pawel Smialowski, Florian Goebels, Benedikt Wachinger, Andreas Ruepp, Dmitrij Frishman:
Negatome 2.0: a database of non-interacting proteins derived by literature mining, manual annotation and protein structure analysis. Nucleic Acids Res. 42(Database-Issue): 396-400 (2014) - 2013
- [j40]Eugene Kolker, Vural Özdemir, Lennart Martens, William Hancock, Gordon A. Anderson, Nathaniel Anderson, Sukru Aynacioglu, Ancha V. Baranova, Shawn R. Campagna, Rui Chen, John Choiniere, Stephen P. Dearth, Wu-Chun Feng, Lynnette Ferguson, Geoffrey C. Fox, Dmitrij Frishman, Robert Grossman, Allison P. Heath, Roger Higdon, Mara H. Hutz, Imre Janko, Lihua Jiang, Sanjay Joshi, Alexander E. Kel, Joseph W. Kemnitz, Isaac S. Kohane, Natali Kolker, Doron Lancet, Elaine Lee, Weizhong Li, Andrey Lisitsa, Adrian Llerena, Courtney MacNealy-Koch, Jean-Claude Marshall, Paola Masuzzo, Amanda May, George Mias, Matthew E. Monroe, Elizabeth Montague, Sean D. Mooney, Alexey I. Nesvizhskii, Santosh Noronha, Gilbert S. Omenn, Harsha Rajasimha, Preveen Ramamoorthy, Jerry Sheehan, Larry Smarr, Charles V. Smith, Todd Smith, Michael Snyder, Srikanth Rapole, Sanjeeva Srivastava, Larissa Stanberry, Elizabeth Stewart, Stefano Toppo, Peter Uetz, Kenneth Verheggen, Brynn H. Voy, Louise Warnich, Steven W. Wilhelm, Gregory Yandl:
Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data Publications. Big Data 1(4): 196-201 (2013) - [j39]Florian Goebels, Dmitrij Frishman:
Prediction of protein interaction types based on sequence and network features. BMC Syst. Biol. 7(S-6): S5 (2013) - [j38]Dmitry N. Ivankov, Natalya S. Bogatyreva, Peter Hönigschmid, Bastian Dislich, Sebastian Hogl, Peer-Hendrik Kuhn, Dmitrij Frishman, Stefan F. Lichtenthaler:
QARIP: a web server for quantitative proteomic analysis of regulated intramembrane proteolysis. Nucleic Acids Res. 41(Webserver-Issue): 459-464 (2013) - [j37]Andrey Chursov, Sebastian J. Kopetzky, Gennady Bocharov, Dmitrij Frishman, Alexander Shneider:
RNAtips: analysis of temperature-induced changes of RNA secondary structure. Nucleic Acids Res. 41(Webserver-Issue): 486-491 (2013) - [j36]Stefka Tyanova, Jürgen Cox, Jesper V. Olsen, Matthias Mann, Dmitrij Frishman:
Phosphorylation Variation during the Cell Cycle Scales with Structural Propensities of Proteins. PLoS Comput. Biol. 9(1) (2013) - 2011
- [j35]Hans-Werner Mewes, Andreas Ruepp, Fabian J. Theis, Thomas Rattei, Mathias C. Walter, Dmitrij Frishman, Karsten Suhre, Manuel Spannagl, Klaus F. X. Mayer, Volker Stümpflen, Alexey V. Antonov:
MIPS: curated databases and comprehensive secondary data resources in 2010. Nucleic Acids Res. 39(Database-Issue): 220-224 (2011) - [j34]Qibin Luo, Philipp Pagel, Baiba Vilne, Dmitrij Frishman:
DIMA 3.0: Domain Interaction Map. Nucleic Acids Res. 39(Database-Issue): 724-729 (2011) - 2010
- [j33]Pawel Smialowski, Dmitrij Frishman, Stefan Kramer:
Pitfalls of supervised feature selection. Bioinform. 26(3): 440-443 (2010) - [j32]Martin Sturm, Michael Hackenberg, David Langenberger, Dmitrij Frishman:
TargetSpy: a supervised machine learning approach for microRNA target prediction. BMC Bioinform. 11: 292 (2010) - [j31]Pawel Smialowski, Philipp Pagel, Philip Wong, Barbara Brauner, Irmtraud Dunger, Gisela Fobo, Goar Frishman, Corinna Montrone, Thomas Rattei, Dmitrij Frishman, Andreas Ruepp:
The Negatome database: a reference set of non-interacting protein pairs. Nucleic Acids Res. 38(Database-Issue): 540-544 (2010) - [j30]Andreas Kowarsch, Angelika Fuchs, Dmitrij Frishman, Philipp Pagel:
Correlated Mutations: A Hallmark of Phenotypic Amino Acid Substitutions. PLoS Comput. Biol. 6(9) (2010) - 2009
- [j29]Mathias C. Walter, Thomas Rattei, Roland Arnold, Ulrich Güldener, Martin Münsterkötter, Karamfilka Nenova, Gabi Kastenmüller, Patrick Tischler, Andreas Wölling, Andreas Volz, Norbert Pongratz, Ralf Jost, Hans-Werner Mewes, Dmitrij Frishman:
PEDANT covers all complete RefSeq genomes. Nucleic Acids Res. 37(Database-Issue): 408-411 (2009) - 2008
- [j28]Hans-Werner Mewes, Sabine Dietmann, Dmitrij Frishman, Richard Gregory, Gertrud Mannhaupt, Klaus F. X. Mayer, Martin Münsterkötter, Andreas Ruepp, Manuel Spannagl, Volker Stümpflen, Thomas Rattei:
MIPS: analysis and annotation of genome information in 2007. Nucleic Acids Res. 36(Database-Issue): 196-201 (2008) - [j27]Philipp Pagel, Matthias Oesterheld, Oksana Tovstukhina, Normann Strack, Volker Stümpflen, Dmitrij Frishman:
DIMA 2.0 - predicted and known domain interactions. Nucleic Acids Res. 36(Database-Issue): 651-655 (2008) - 2007
- [j26]Pawel Smialowski, Antonio J. Martin-Galiano, Aleksandra Mikolajka, Tobias Girschick, Tad A. Holak, Dmitrij Frishman:
Protein solubility: sequence based prediction and experimental verification. Bioinform. 23(19): 2536-2542 (2007) - [j25]Angelika Fuchs, Antonio J. Martin-Galiano, Matan Kalman, Sarel Jacob Fleishman, Nir Ben-Tal, Dmitrij Frishman:
Co-evolving residues in membrane proteins. Bioinform. 23(24): 3312-3319 (2007) - [j24]Irena I. Artamonova, Goar Frishman, Dmitrij Frishman:
Applying negative rule mining to improve genome annotation. BMC Bioinform. 8 (2007) - [j23]M. Louise Riley, Thorsten Schmidt, Irena I. Artamonova, Christian Wagner, Andreas Volz, Klaus Heumann, Hans-Werner Mewes, Dmitrij Frishman:
PEDANT genome database: 10 years online. Nucleic Acids Res. 35(Database-Issue): 354-357 (2007) - 2006
- [j22]Philipp Pagel, Matthias Oesterheld, Volker Stümpflen, Dmitrij Frishman:
The DIMA web resource - exploring the protein domain network. Bioinform. 22(8): 997-998 (2006) - [j21]Thorsten Schmidt, Dmitrij Frishman:
PROMPT: a protein mapping and comparison tool. BMC Bioinform. 7: 331 (2006) - [j20]Hans-Werner Mewes, Dmitrij Frishman, Klaus F. X. Mayer, Martin Münsterkötter, Octave Noubibou, Philipp Pagel, Thomas Rattei, Matthias Oesterheld, Andreas Ruepp, Volker Stümpflen:
MIPS: analysis and annotation of proteins from whole genomes in 2005. Nucleic Acids Res. 34(Database-Issue): 169-172 (2006) - [j19]Andreas Ruepp, Octave Noubibou Doudieu, Jos van den Oever, Barbara Brauner, Irmtraud Dunger-Kaltenbach, Gisela Fobo, Goar Frishman, Corinna Montrone, Christine Skornia, Steffi Wanka, Thomas Rattei, Philipp Pagel, M. Louise Riley, Dmitrij Frishman, Dimitrij Surmeli, Igor V. Tetko, Matthias Oesterheld, Volker Stümpflen, Hans-Werner Mewes:
The Mouse Functional Genome Database (MfunGD): functional annotation of proteins in the light of their cellular context. Nucleic Acids Res. 34(Database-Issue): 568-571 (2006) - [j18]Philip Wong, Dmitrij Frishman:
Fold Designability, Distribution, and Disease. PLoS Comput. Biol. 2(5) (2006) - 2005
- [j17]Philipp Pagel, Stefan Kovac, Matthias Oesterheld, Barbara Brauner, Irmtraud Dunger-Kaltenbach, Goar Frishman, Corinna Montrone, Pekka Mark, Volker Stümpflen, Hans-Werner Mewes, Andreas Ruepp, Dmitrij Frishman:
The MIPS mammalian protein?Cprotein interaction database. Bioinform. 21(6): 832-834 (2005) - [j16]Mark Borodovsky, Andrey Rzhetsky, Dmitrij Frishman:
The Fifth Georgia Tech - Oak Ridge National Laboratory International Conference in Bioinformatics: in silico Biology, Computational Genomics and Evolutionary Biology. Bioinform. 21(S3): 1 (2005) - [j15]Irena I. Artamonova, Goar Frishman, Mikhail S. Gelfand, Dmitrij Frishman:
Mining sequence annotation databanks for association patterns. Bioinform. 21(S3): 57 (2005) - [j14]A. D. Neverov, Irena I. Artamonova, Ramil N. Nurtdinov, Dmitrij Frishman, Mikhail S. Gelfand, Andrey A. Mironov:
Alternative splicing and protein function. BMC Bioinform. 6: 266 (2005) - [j13]M. Louise Riley, Thorsten Schmidt, Christian Wagner, Hans-Werner Mewes, Dmitrij Frishman:
The PEDANT genome database in 2005. Nucleic Acids Res. 33(Database-Issue): 308-310 (2005) - 2004
- [j12]Marc N. Offman, Ramil N. Nurtdinov, Mikhail S. Gelfand, Dmitrij Frishman:
No statistical support for correlation between the positions of protein interaction sites and alternatively spliced regions. BMC Bioinform. 5: 41 (2004) - [j11]Hans-Werner Mewes, Clara Amid, Roland Arnold, Dmitrij Frishman, Ulrich Güldener, Gertrud Mannhaupt, Martin Münsterkötter, Philipp Pagel, Normann Strack, Volker Stümpflen, Jens Warfsmann, Andreas Ruepp:
MIPS: analysis and annotation of proteins from whole genomes. Nucleic Acids Res. 32(Database-Issue): 41-44 (2004) - [j10]Matthias Heinig, Dmitrij Frishman:
STRIDE: a web server for secondary structure assignment from known atomic coordinates of proteins. Nucleic Acids Res. 32(Web-Server-Issue): 500-502 (2004) - 2003
- [j9]Philip Wong, Grigory Kolesov, Dmitrij Frishman, Walid A. Houry:
Phylogenetic Web Profiler. Bioinform. 19(6): 782-783 (2003) - [j8]Dmitrij Frishman, Martin Mokrejs, Denis Kosykh, Gabi Kastenmüller, Grigory Kolesov, Igor Zubrzycki, Christian Gruber, Birgitta Geier, Andreas Kaps, Kaj Albermann, Andreas Volz, Christian Wagner, Matthias Fellenberg, Klaus Heumann, Hans-Werner Mewes:
The PEDANT genome database. Nucleic Acids Res. 31(1): 207-211 (2003) - 2002
- [j7]Grigory Kolesov, Hans-Werner Mewes, Dmitrij Frishman:
SNAPper: gene order predicts gene function. Bioinform. 18(7): 1017-1019 (2002) - [j6]Hans-Werner Mewes, Dmitrij Frishman, Ulrich Güldener, Gertrud Mannhaupt, Klaus F. X. Mayer, Martin Mokrejs, Burkhard Morgenstern, Martin Münsterkötter, Stephen Rudd, B. Weil:
MIPS: a database for genomes and protein sequences. Nucleic Acids Res. 30(1): 31-34 (2002) - 2001
- [j5]Dmitrij Frishman, Kaj Albermann, Jean Hani, Klaus Heumann, Agnes Metanomski, Alfred Zollner, Hans-Werner Mewes:
Functional and structural genomics using PEDANT. Bioinform. 17(1): 44-57 (2001) - 2000
- [j4]Hans-Werner Mewes, Dmitrij Frishman, Christian Gruber, Birgitta Geier, Dirk Haase, Andreas Kaps, Kai Lemcke, Gertrud Mannhaupt, Friedhelm Pfeiffer, Christine M. Schüller, S. Stocker, B. Weil:
MIPS: a database for genomes and protein sequences. Nucleic Acids Res. 28(1): 37-40 (2000) - 1999
- [j3]Hans-Werner Mewes, Klaus Heumann, Andreas Kaps, Klaus F. X. Mayer, Friedhelm Pfeiffer, S. Stocker, Dmitrij Frishman:
MIPS: a database for genomes and protein sequences. Nucleic Acids Res. 27(1): 44-48 (1999) - 1998
- [j2]Dmitrij Frishman, Klaus Heumann, Arthur M. Lesk, Hans-Werner Mewes:
Comprehensive, comprehensible, distributed and intelligent databases: current status. Bioinform. 14(7): 551-561 (1998) - [j1]Hans-Werner Mewes, Jean Hani, Friedhelm Pfeiffer, Dmitrij Frishman:
MIPS: a database for protein sequences and complete genomes. Nucleic Acids Res. 26(1): 33-37 (1998)
Conference and Workshop Papers
- 2024
- [c5]Alma Davidson, Marina Parr, Franziska Totzeck, Alexander Churkin, Danny Barash, Dmitrij Frishman, Tamir Tuller:
Evidence of Increased Adaptation of Omicron SARS-CoV-2 Codons to Humans. RECOMB-CG 2024: 248-270 - 2003
- [c4]Philipp Pagel, Hans-Werner Mewes, Dmitrij Frishman:
Conservation of protein-protein interactions among Ascomycota species. German Conference on Bioinformatics 2003: 111-115 - 1998
- [c3]Dmitrij Frishman, Andrey A. Mironov, Hans-Werner Mewes, Mikhail S. Gelfand:
Combining diverse evidence for gene recognition in completely sequenced bacterial genomes. German Conference on Bioinformatics 1998 - 1997
- [c2]Kaj Albermann, M. Bähr, Dmitrij Frishman, A. Gleißner, Jean Hani, Klaus Heumann, Andreas Maierl, Alfred Zollner, Hans-Werner Mewes:
The MIPS Yeast Genome Database. German Conference on Bioinformatics 1997: 121-122 - 1996
- [c1]Andreas Kaps, Klaus Heumann, Dmitrij Frishman, M. Bähr, Hans-Werner Mewes:
Visualization and Analysis of the Complete Yeast Genome. German Conference on Bioinformatics - Selected Papers 1996: 178-188
Coauthor Index
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