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ORCIDAndrey A. Mironov
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2020 – today
- 2023
[j23]Grigory Ryabykh, S. V. Kuznetsov, Y. D. Korostelev, A. I. Sigorskikh, A. A. Zharikova, Andrey A. Mironov:
RNA-Chrom: a manually curated analytical database of RNA-chromatin interactome. Database J. Biol. Databases Curation 2023 (2023)- [j22]Asia Mendelevich, Saumya Gupta, Aleksei Pakharev, Athanasios Teodosiadis, Andrey A. Mironov, Alexander A. Gimelbrant:
Foreign RNA spike-ins enable accurate allele-specific expression analysis at scale. Bioinform. 39(Supplement-1): 431-439 (2023) - 2021
- [j21]Andrey A. Mironov, Stepan Denisov, Alexander Greß
, Olga V. Kalinina, Dmitri D. Pervouchine:
An extended catalogue of tandem alternative splice sites in human tissue transcriptomes. PLoS Comput. Biol. 17(4) (2021)
2010 – 2019
- 2018
- [j20]Boris Simovski, Chakravarthi Kanduri, Sveinung Gundersen, Dmytro Titov, Diana Domanska, Christoph Bock, Lara Bossini-Castillo, Maria Chikina, Alexander V. Favorov, Ryan M. Layer, Andrey A. Mironov, Aaron R. Quinlan, Nathan C. Sheffield, Gosia Trynka, Geir Kjetil Sandve:
Coloc-stats: a unified web interface to perform colocalization analysis of genomic features. Nucleic Acids Res. 46(Webserver-Issue): W186-W193 (2018) - 2017
- [j19]Elena D. Stavrovskaya, Tejasvi Niranjan, Elana J. Fertig, Sarah J. Wheelan, Alexander V. Favorov, Andrey A. Mironov:
StereoGene: rapid estimation of genome-wide correlation of continuous or interval feature data. Bioinform. 33(20): 3158-3165 (2017) - 2014
- [j18]Ruslan A. Soldatov, Svetlana V. Vinogradova, Andrey A. Mironov:
RNASurface: fast and accurate detection of locally optimal potentially structured RNA segments. Bioinform. 30(4): 457-463 (2014) - 2013
- [c8]Elena D. Stavrovskaya, Andrey A. Mironov, Alexander V. Favorov:
Fast assessment of the correlation between coverage-like genomic features and its statistical significance. IWBBIO 2013: 225-232 - 2012
- [j17]Alexander V. Favorov, Loris Mularoni, Leslie M. Cope, Yulia A. Medvedeva, Andrey A. Mironov, Vsevolod J. Makeev, Sarah J. Wheelan:
Exploring Massive, Genome Scale Datasets with the GenometriCorr Package. PLoS Comput. Biol. 8(5) (2012) - [c7]Anna A. Nilulova, Alexander V. Favorov, Vsevolod J. Makeev, Andrey A. Mironov:
A Generalized Hidden Markov Model for Prediction of Cis-regulatory Modules in Eukaryote Genomes and Description of Their Internal Structure. BIOINFORMATICS 2012: 34-41 - [c6]Elena D. Stavrovskaya, Andrey A. Mironov, Dmitry A. Rodionov, Inna Dubchak, Pavel S. Novichkov:
Automated Regulon Content Prediction and Estimation of PWM Quality. BIOINFORMATICS 2012: 322-325 - [c5]Dmitri D. Pervouchine, Ekaterina Khrameeva, Marina Pichugina, Olexii Nikolaienko, Mikhail S. Gelfand, Petr Rubtsov, Andrey A. Mironov:
Evidence for Widespread Association of Mammalian Splicing and Conserved Long-Range RNA Structures. RECOMB 2012: 199 - 2010
- [j16]Pavel V. Mazin, Mikhail S. Gelfand, Andrey A. Mironov, Aleksandra B. Rakhmaninova, Anatoly R. Rubinov, Robert B. Russell, Olga V. Kalinina:
An automated stochastic approach to the identification of the protein specificity determinants and functional subfamilies. Algorithms Mol. Biol. 5: 29 (2010) - [j15]Pavel S. Novichkov, Dmitry A. Rodionov, Elena D. Stavrovskaya, Elena S. Novichkova, Alexei E. Kazakov, Mikhail S. Gelfand, Adam P. Arkin, Andrey A. Mironov, Inna Dubchak:
RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach. Nucleic Acids Res. 38(Web-Server-Issue): 299-307 (2010)
2000 – 2009
- 2009
- [c4]Mikhail S. Gelfand, Alexei E. Kazakov, Yuri D. Korostelev, Olga N. Laikova, Andrey A. Mironov, Aleksandra B. Rakhmaninova, Dmitry A. Ravcheev, Dmitry A. Rodionov, Alexei G. Vitreschak:
Evolution of Regulatory Systems in Bacteria (Invited Keynote Talk). ISBRA 2009: 1-4 - 2007
- [j14]Alexei E. Kazakov, Michael J. Cipriano, Pavel S. Novichkov, Simon Minovitsky, Dmitry V. Vinogradov, Adam P. Arkin, Andrey A. Mironov, Mikhail S. Gelfand, Inna Dubchak:
RegTransBase - a database of regulatory sequences and interactions in a wide range of prokaryotic genomes. Nucleic Acids Res. 35(Database-Issue): 407-412 (2007) - 2006
- [j13]Ludmila V. Danilova, Dmitri D. Pervouchine, Alexander V. Favorov, Andrey A. Mironov:
Rnakinetics: a Web Server that Models Secondary Structure Kinetics of an Elongating RNA. J. Bioinform. Comput. Biol. 4(2): 589-596 (2006) - [j12]Gregory Kucherov, Andrey A. Mironov, Mikhail A. Roytberg:
An Overview of the Algorithmic Session of MCCMB'05. J. Bioinform. Comput. Biol. 4(2) (2006) - 2005
- [j11]Alexander V. Favorov, Mikhail S. Gelfand, Anna V. Gerasimova, Dmitry A. Ravcheev, Andrey A. Mironov, Vsevolod J. Makeev:
A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length. Bioinform. 21(10): 2240-2245 (2005) - [j10]A. D. Neverov, Irena I. Artamonova, Ramil N. Nurtdinov, Dmitrij Frishman, Mikhail S. Gelfand, Andrey A. Mironov:
Alternative splicing and protein function. BMC Bioinform. 6: 266 (2005) - 2004
- [j9]Olga V. Kalinina, Pavel S. Novichkov, Andrey A. Mironov, Mikhail S. Gelfand, Aleksandra B. Rakhmaninova:
SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins. Nucleic Acids Res. 32(Web-Server-Issue): 424-428 (2004) - 2003
- [j8]Elena D. Stavrovskaya, Andrey A. Mironov:
Two genetic algorithms for identification of regulatory signals. Silico Biol. 3(1-2): 49-56 (2003) - 2002
- [j7]M. V. Baytaluk, Mikhail S. Gelfand, Andrey A. Mironov:
Exact mapping of prokaryotic gene starts. Briefings Bioinform. 3(2): 181-194 (2002) - 2001
- [j6]Andrey A. Mironov, Pavel S. Novichkov, Mikhail S. Gelfand:
Pro-Frame: similarity-based gene recognition in eukaryotic DNA sequences with errors. Bioinform. 17(1): 13-15 (2001) - [j5]Pavel S. Novichkov, Mikhail S. Gelfand, Andrey A. Mironov:
Gene recognition in eukaryotic DNA by comparison of genomic sequences. Bioinform. 17(11): 1011-1018 (2001) - 2000
- [j4]Mikhail S. Gelfand, Pavel S. Novichkov, Elena S. Novichkova, Andrey A. Mironov:
Comparative Analysis of Regulatory Patterns in Bacterial Genomes. Briefings Bioinform. 1(4): 357-371 (2000)
1990 – 1999
- 1998
- [j3]Sing-Hoi Sze, Mikhail A. Roytberg, Mikhail S. Gelfand, Andrey A. Mironov, Tatiana V. Astakhova, Pavel A. Pevzner:
Algorithms and software for support of gene identification experiments. Bioinform. 14(1): 14-19 (1998) - [c3]Dmitrij Frishman, Andrey A. Mironov, Hans-Werner Mewes, Mikhail S. Gelfand:
Combining diverse evidence for gene recognition in completely sequenced bacterial genomes. German Conference on Bioinformatics 1998 - [c2]Andrey A. Mironov, Pavel A. Pevzner:
SST versus EST in Gene Recognition (Invited Paper). SPIRE 1998: 60-64 - 1996
- [c1]Mikhail S. Gelfand, Andrey A. Mironov, Pavel A. Pevzner:
Spliced Alignment: A New Approach to Gene Recognition. CPM 1996: 141-158 - 1995
- [j2]Andrey A. Mironov, N. N. Alexandrov, N. Yu. Bogodarova, A. Grigorjev, V. F. Lebedev, L. V. Lunovskaya, M. E. Truchan, Pavel A. Pevzner:
DNASUN: a package of computer programs for the biotechnology laboratory. Comput. Appl. Biosci. 11(3): 331-335 (1995) - 1990
- [j1]A. V. Grigorjev, Andrey A. Mironov:
Mapping DNA by stochastic relaxation: a new approach to fragment sizes. Comput. Appl. Biosci. 6(2): 107-111 (1990)
Coauthor Index
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