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7. WABI 2007: Philadelphia, PA, USA
- Raffaele Giancarlo, Sridhar Hannenhalli:
Algorithms in Bioinformatics, 7th International Workshop, WABI 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings. Lecture Notes in Computer Science 4645, Springer 2007, ISBN 978-3-540-74125-1 - Pavel A. Pevzner:
Shotgun Protein Sequencing. 1 - Evgeni Tsivtsivadze, Jorma Boberg, Tapio Salakoski:
Locality Kernels for Protein Classification. 2-11 - Roy Varshavsky, Menachem Fromer, Amit Man, Michal Linial:
When Less Is More: Improving Classification of Protein Families with a Minimal Set of Global Features. 12-24 - Marco Vassura, Luciano Margara, Pietro di Lena, Filippo Medri, Piero Fariselli, Rita Casadio:
Fault Tolerance for Large Scale Protein 3D Reconstruction from Contact Maps. 25-37 - Jieun K. Jeong, Piotr Berman, Teresa M. Przytycka:
Bringing Folding Pathways into Strand Pairing Prediction. 38-48 - Loredana M. Genovese, Filippo Geraci, Marco Pellegrini:
A Fast and Accurate Heuristic for the Single Individual SNP Haplotyping Problem with Many Gaps, High Reading Error Rate and Low Coverage. 49-60 - Phil Hyoun Lee, Hagit Shatkay:
Two Birds, One Stone: Selecting Functionally Informative Tag SNPs for Disease Association Studies. 61-72 - Justin Kennedy, Ion I. Mandoiu, Bogdan Pasaniuc:
Genotype Error Detection Using Hidden Markov Models of Haplotype Diversity. 73-84 - Pasi Rastas, Esko Ukkonen:
Haplotype Inference Via Hierarchical Genotype Parsing. 85-97 - Antoni Lozano, Ron Y. Pinter, Oleg Rokhlenko, Gabriel Valiente, Michal Ziv-Ukelson:
Seeded Tree Alignment and Planar Tanglegram Layout. 98-110 - Hadas Birin, Zohar Gal-Or, Isaac Elias, Tamir Tuller:
Inferring Models of Rearrangements, Recombinations, and Horizontal Transfers by the Minimum Evolution Criterion. 111-123 - Mukul S. Bansal, Oliver Eulenstein:
An Omega(n2/log n) Speed-Up of TBR Heuristics for the Gene-Duplication Problem. 124-135 - Alberto Apostolico, Claudia Tagliacollo:
Incremental Discovery of Irredundant Motif Bases in Time O(|Sigma| n2 log n). 136-148 - Christina Boucher, Daniel G. Brown, Paul Church:
A Graph Clustering Approach to Weak Motif Recognition. 149-160 - Hatice Gulcin Ozer, William C. Ray:
Informative Motifs in Protein Family Alignments. 161-170 - Joe Dundas, T. Andrew Binkowski, Bhaskar DasGupta, Jie Liang:
Topology Independent Protein Structural Alignment. 171-182 - Giuseppe Nicosia, Giovanni Stracquadanio:
Generalized Pattern Search and Mesh Adaptive Direct Search Algorithms for Protein Structure Prediction. 183-193 - Degui Zhi, Maxim Shatsky, Steven E. Brenner:
Alignment-Free Local Structural Search by Writhe Decomposition. 194-195 - Xueyi Wang, Jack Snoeyink:
Defining and Computing Optimum RMSD for Gapped Multiple Structure Alignment. 196-207 - Mihaela Pertea, Steven Salzberg:
Using Protein Domains to Improve the Accuracy of Ab Initio Gene Finding. 208-215 - Lenwood S. Heath, Amrita Pati:
Genomic Signatures in De Bruijn Chains. 216-227 - Pavel P. Kuksa, Vladimir Pavlovic:
Fast Kernel Methods for SVM Sequence Classifiers. 228-239 - Rastislav Srámek, Brona Brejová, Tomás Vinar:
On-Line Viterbi Algorithm for Analysis of Long Biological Sequences. 240-251 - Christopher James Langmead, Sumit Kumar Jha:
Predicting Protein Folding Kinetics Via Temporal Logic Model Checking. 252-264 - Ankur Dhanik, Peggy Yao, Nathan Marz, Ryan Propper, Charles Kou, Guanfeng Liu, Henry van den Bedem, Jean-Claude Latombe:
Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops. 265-276 - Vicky Choi, Chunfang Zheng, Qian Zhu, David Sankoff:
Algorithms for the Extraction of Synteny Blocks from Comparative Maps. 277-288 - Paul Medvedev, Konstantinos Georgiou, Gene Myers, Michael Brudno:
Computability of Models for Sequence Assembly. 289-301 - Jaime I. Dávila, Sudha Balla, Sanguthevar Rajasekaran:
Fast Algorithms for Selecting Specific siRNA in Complete mRNA Data. 302-309 - Chunmei Liu, Yinglei Song, Louis W. Shapiro:
RNA Folding Including Pseudoknots: A New Parameterized Algorithm and Improved Upper Bound. 310-322 - Hosna Jabbari, Anne Condon, Ana Pop, Cristina Pop, Yinglei Zhao:
HFold: RNA Pseudoknotted Secondary Structure Prediction Using Hierarchical Folding. 323-334 - Axel Mosig, Julian J.-L. Chen, Peter F. Stadler:
Homology Search with Fragmented Nucleic Acid Sequence Patterns. 335-345 - Lucian Ilie, Silvana Ilie:
Fast Computation of Good Multiple Spaced Seeds. 346-358 - Eagu Kim, John D. Kececioglu:
Inverse Sequence Alignment from Partial Examples. 359-370 - Maja Bucan:
Novel Approaches in Psychiatric Genomics. 371 - Francis Y. L. Chin, Henry C. M. Leung, Wing-Kin Sung, Siu-Ming Yiu:
The Point Placement Problem on a Line - Improved Bounds for Pairwise Distance Queries. 372-382 - Alexander Schliep, Roland Krause:
Efficient Computational Design of Tiling Arrays Using a Shortest Path Approach. 383-394 - Yonghui Wu, Prasanna Bhat, Timothy J. Close, Stefano Lonardi:
Efficient and Accurate Construction of Genetic Linkage Maps from Noisy and Missing Genotyping Data. 395-406 - Réka Albert, Bhaskar DasGupta, Riccardo Dondi, Sema Kachalo, Eduardo D. Sontag, Alexander Zelikovsky, Kelly Westbrooks:
A Novel Method for Signal Transduction Network Inference from Indirect Experimental Evidence. 407-419 - Geoffrey Koh, Lisa Tucker-Kellogg, David Hsu, P. S. Thiagarajan:
Composing Globally Consistent Pathway Parameter Estimates Through Belief Propagation. 420-430
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