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Database - The Journal of Biological Databases and Curation, Volume 2009
Volume 2009, 2009
- David Landsman
, Robert Gentleman, Janet Kelso
, B. F. Francis Ouellette
:
DATABASE: A new forum for biological databases and curation.
- Olivier Arnaiz
, Agata Malinowska
, Catherine Klotz, Linda Sperling
, Michal Dadlez
, France Koll, Jean Cohen:
Cildb: a knowledgebase for centrosomes and cilia. - Taner Z. Sen
, Carson M. Andorf, Mary L. Schaeffer, Lisa C. Harper, Michael E. Sparks
, Jon Duvick, Volker P. Brendel, Ethalinda K. S. Cannon
, Darwin A. Campbell
, Carolyn J. Lawrence
:
MaizeGDB becomes 'sequence-centric'. - Rezarta Islamaj Dogan
, G. Craig Murray, Aurélie Névéol, Zhiyong Lu:
Understanding PubMed® user search behavior through log analysis. - David Vallenet
, Stefan Engelen
, Damien Mornico, Stéphane Cruveiller, Ludovic Fleury, Aurélie Lajus, Zoé Rouy, David Roche, Gregory Salvignol, Claude Scarpelli, Claudine Médigue:
MicroScope: a platform for microbial genome annotation and comparative genomics. - Karen G. Dowell, Monica S. McAndrews-Hill, David P. Hill, Harold J. Drabkin, Judith A. Blake
:
Integrating text mining into the MGI biocuration workflow. - Neil D. Rawlings
:
A large and accurate collection of peptidase cleavages in the MEROPS database. - Christina Chandras, Thomas Weaver, Michael Zouberakis, Damian Smedley, Klaus Schughart
, Nadia A. Rosenthal
, John M. Hancock, George Kollias
, Paul N. Schofield, Vassilis Aidinis
:
Models for financial sustainability of biological databases and resources. - Pascale Gaudet, Lydie Lane
, Petra Fey
, Alan J. Bridge
, Sylvain Poux
, Andrea H. Auchincloss, Kristian B. Axelsen
, Silvia Braconi-Quintaje, Emmanuel Boutet
, P. Brown, Elisabeth Coudert
, Ruchira S. Datta
, W. C. de Lima, Tulio de Oliveira, Severine Duvaud, N. Farriol-Mathis, Serenella Ferro-Rojas, Marc Feuermann, Alain Gateau, Ursula Hinz, Chantal Hulo, Janet James, Silvia Jimenez, Florence Jungo, Guillaume Keller, Phillippe Lemercier, Damien Lieberherr, Madelaine Moinat, Anastasia N. Nikolskaya, Ivo Pedruzzi
, Catherine Rivoire
, Bernd Roechert, Michel Schneider
, E. Stanley, Michael Tognolli
, Kimmen Sjölander, Lydie Bougueleret, Rex L. Chisholm
, Amos Bairoch
:
Collaborative annotation of genes and proteins between UniProtKB/Swiss-Prot and dictyBase. - Lope A. Flórez, Sebastian F. Roppel, Arne G. Schmeisky, Christoph R. Lammers, Jörg Stülke
:
A community-curated consensual annotation that is continuously updated: the Bacillus subtilis centred wiki SubtiWiki. - Nils Gehlenborg
, Daehee Hwang, Inyoul Y. Lee, Hyuntae Yoo, David Baxter, Brianne Petritis, Rose Pitstick, Bruz Marzolf, Stephen J. DeArmond, George Carlson, Leroy Hood:
The Prion Disease Database: a comprehensive transcriptome resource for systems biology research in prion diseases. - Gregory Vey
:
Differential direct coding: a compression algorithm for nucleotide sequence data. - Alessandro Laganà, Stefano Forte
, A. Giudice, M. R. Arena, Piera Laura Puglisi, Rosalba Giugno
, Alfredo Pulvirenti, Dennis E. Shasha, Alfredo Ferro:
miRò: a miRNA knowledge base. - Lothar Wissler, Emanuela Dattolo
, Andrew D. Moore, Thorsten B. Reusch
, Jeanine L. Olsen
, M. Migliaccio, Erich Bornberg-Bauer
, Gabriele Procaccini
:
Dr. Zompo: an online data repository for Zostera marina and Posidonia oceanica ESTs. - Francesco Chiani, Camilla Iannone, Rodolfo Negri, Daniele Paoletti, Mattia D'Antonio, Paolo D'Onorio De Meo, Tiziana Castrignanò:
Radiation Genes: a database devoted to microarrays screenings revealing transcriptome alterations induced by ionizing radiation in mammalian cells. - Hui Yu, Fudong Yu
, Guoqing Zhang
, Xiang Shen, Yun-Qin Chen, Yuan-Yuan Li, Yi-Xue Li:
DBH2H: vertebrate head-to-head gene pairs annotated at genomic and post-genomic levels. - Junjian Ni, Anuradha Pujar, Ken Youens-Clark
, Immanuel Yap, Pankaj Jaiswal, Isaak Y. Tecle, Chih-Wei Tung
, Liya Ren, William Spooner, Xuehong Wei, Shuly Avraham, Doreen Ware, Lincoln Stein, Susan McCouch:
Gramene QTL database: development, content and applications. - R. Travis Moreland
, Joseph F. Ryan
, Christopher Pan, Andreas D. Baxevanis:
The Homeodomain Resource: a comprehensive collection of sequence, structure, interaction, genomic and functional information on the homeodomain protein family. - Shuoyong Shi, Jimin Pei, Ruslan Sadreyev, Lisa N. Kinch, Indraneel Majumdar, Jing Tong, Hua Cheng, Bong-Hyun Kim, Nick V. Grishin:
Analysis of CASP8 targets, predictions and assessment methods. - Maria C. Costanzo, Marek S. Skrzypek, Robert S. Nash, Edith D. Wong, Gail Binkley, Stacia R. Engel
, Benjamin C. Hitz, Eurie L. Hong, J. Michael Cherry
:
New mutant phenotype data curation system in the Saccharomyces Genome Database.
- Rachael P. Huntley
, David Binns, Emily Dimmer, Daniel Barrell
, Claire O'Donovan
, Rolf Apweiler
:
QuickGO: a user tutorial for the web-based Gene Ontology browser.
- Willy Valdivia Granda, Francis Larson:
ORION-VIRCAT: a tool for mapping ICTV and NCBI taxonomies.
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