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Journal Articles
- 2023
[j17]Chung-Hsuan Yang
, Yi-Chung Wu, Yen-Lung Chen, Chao-Hsi Lee, Jui-Hung Hung, Chia-Hsiang Yang:
An FM-Index Based High-Throughput Memory-Efficient FPGA Accelerator for Paired-End Short-Read Mapping. IEEE Trans. Biomed. Circuits Syst. 17(6): 1331-1341 (2023)- [j16]Yuan-Yu Chang, Sheng-Tang Wong, Emmanuel Oluwatobi Salawu, Ming-Hsuan Liao, Jui-Hung Hung, Lee-Wei Yang:
Full-Privacy Secured Search Engine Empowered by Efficient Genome-Mapping Algorithms. IEEE J. Biomed. Health Informatics 27(10): 5155-5164 (2023) - 2021
- [j15]Ting-Hsuan Wang, Cheng-Ching Huang, Jui-Hung Hung:
EARRINGS: an efficient and accurate adapter trimmer entails no a priori adapter sequences. Bioinform. 37(13): 1846-1852 (2021) - [j14]Yi-Chung Wu, Yen-Lung Chen, Chung-Hsuan Yang, Chao-Hsi Lee, Chao-Yang Yu, Nian-Shyang Chang, Ling-Chien Chen, Jia-Rong Chang, Chun-Pin Lin, Hung-Lieh Chen, Chi-Shi Chen, Jui-Hung Hung, Chia-Hsiang Yang:
A 975-mW Fully Integrated Genetic Variant Discovery System-on-Chip in 28 nm for Next-Generation Sequencing. IEEE J. Solid State Circuits 56(1): 123-135 (2021) - 2017
- [j13]Yi-Chung Wu, Chia-Hua Chang, Jui-Hung Hung, Chia-Hsiang Yang:
A 135-mW Fully Integrated Data Processor for Next-Generation Sequencing. IEEE Trans. Biomed. Circuits Syst. 11(6): 1216-1225 (2017) - 2016
- [j12]Chia-Hua Chang, Min-Te Chou, Yi-Chung Wu, Ting-Wei Hong, Yun-Lung Li, Chia-Hsiang Yang, Jui-Hung Hung:
sBWT: memory efficient implementation of the hardware-acceleration-friendly Schindler transform for the fast biological sequence mapping. Bioinform. 32(22): 3498-3500 (2016) - [j11]Wei-Kai Cheng, Jui-Hung Hung, Yi-Hsuan Chiu:
Non-Uniform Clock Mesh Synthesis with Clock Gating and Register Clustering. IEICE Trans. Fundam. Electron. Commun. Comput. Sci. 99-A(12): 2388-2397 (2016) - [j10]Jui-Hung Hung, Yu-Cheng Lin, Wei-Kai Cheng, Tsai-Ming Hsieh:
Unified approach for simultaneous functional and timing ECO. IET Circuits Devices Syst. 10(6): 514-521 (2016) - 2015
- [j9]Yun-Lung Li, Jui-Cheng Weng, Chiung-Chih Hsiao, Min-Te Chou, Chin-Wen Tseng, Jui-Hung Hung:
PEAT: an intelligent and efficient paired-end sequencing adapter trimming algorithm. BMC Bioinform. 16(S-1): S2 (2015) - 2013
- [j8]Chih-Hung Chou, Feng-Mao Lin, Min-Te Chou, Sheng-Da Hsu, Tzu-Hao Chang, Shun-Long Weng, Sirjana Shrestha, Chiung-Chih Hsiao, Jui-Hung Hung, Hsien-Da Huang:
A computational approach for identifying microRNA-target interactions using high-throughput CLIP and PAR-CLIP sequencing. BMC Genom. 14(S-1): S2 (2013) - [j7]Jie Wang, Jiali Zhuang, Sowmya Iyer, Xin-Ying Lin, Melissa C. Greven, Bong-Hyun Kim, Jill Moore, Brian G. Pierce, Xianjun Dong, Daniel Virgil, Ewan Birney, Jui-Hung Hung, Zhiping Weng:
Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium. Nucleic Acids Res. 41(Database-Issue): 171-176 (2013) - 2012
- [j6]Jui-Hung Hung, Tun-Hsiang Yang, Zhenjun Hu, Zhiping Weng, Charles DeLisi:
Gene set enrichment analysis: performance evaluation and usage guidelines. Briefings Bioinform. 13(3): 281-291 (2012) - [j5]Daichi Shigemizu, Zhenjun Hu, Jui-Hung Hung, Chia-Ling Huang, Yajie Wang, Charles DeLisi:
Using Functional Signatures to Identify Repositioned Drugs for Breast, Myelogenous Leukemia and Prostate Cancer. PLoS Comput. Biol. 8(2) (2012) - 2011
- [j4]Hsin-Hsiung Huang, Jui-Hung Hung, Cheng-Chiang Lin, Tsai-Ming Hsieh:
Wire Planning for Electromigration and Interference Avoidance in Analog Circuits. IEICE Trans. Fundam. Electron. Commun. Comput. Sci. 94-A(11): 2402-2411 (2011) - 2009
- [j3]Zhenjun Hu, Jui-Hung Hung, Yan Wang, Yi-Chien Chang, Chia-Ling Huang, Matt Huyck, Charles DeLisi:
VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology. Nucleic Acids Res. 37(Web-Server-Issue): 115-121 (2009) - 2006
- [j2]Tzong-Yi Lee, Hsien-Da Huang, Jui-Hung Hung, Hsi-Yuan Huang, Yuh-Shyong Yang, Tzu-Hao Wang:
dbPTM: an information repository of protein post-translational modification. Nucleic Acids Res. 34(Database-Issue): 622-627 (2006) - [j1]Jui-Hung Hung, Hsien-Da Huang, Tzong-Yi Lee:
ProKware: integrated software for presenting protein structural properties in protein tertiary structures. Nucleic Acids Res. 34(Web-Server-Issue): 89-94 (2006)
Conference and Workshop Papers
- 2023
- [c9]Yen-Lung Chen, Chung-Hsuan Yang, Yi-Chung Wu, Chao-Hsi Lee, Wen-Ching Chen, Liang-Yi Lin, Nian-Shyang Chang, Chun-Pin Lin, Chi-Shi Chen, Jui-Hung Hung, Chia-Hsiang Yang:
A Fully Integrated End-to-End Genome Analysis Accelerator for Next-Generation Sequencing. ISSCC 2023: 44-45 - 2021
- [c8]Jia-Xiang Tang, Shih-Hsu Huang, Jui-Hung Hung:
ECO Timing Optimization with Data Paths and Clock Paths Considered. ISPACS 2021: 1-2 - 2020
- [c7]Yi-Chung Wu, Yen-Lung Chen, Chung-Hsuan Yang, Chao-Hsi Lee, Chao-Yang Yu, Nian-Shyang Chang, Ling-Chien Chen, Jia-Rong Chang, Chun-Pin Lin, Hung-Lieh Chen, Chi-Shi Chen, Jui-Hung Hung, Chia-Hsiang Yang:
21.1 A Fully Integrated Genetic Variant Discovery SoC for Next-Generation Sequencing. ISSCC 2020: 322-324 - [c6]Jui-Hung Hung, Shih-Hsu Huang, Chun-Hua Cheng, Hsu-Yu Kao, Wei-Kai Cheng:
Co-Optimization of Grid-Based TAM Wire Routing and Test Scheduling with Reconfigurable Wrappers. VTS 2020: 1-6 - 2017
- [c5]Yi-Chung Wu, Jui-Hung Hung, Chia-Hsiang Yang:
14.8 A 135mW fully integrated data processor for next-generation sequencing. ISSCC 2017: 252-253 - 2015
- [c4]Jui-Hung Hung, Yu-Cheng Lin, Wei-Kai Cheng, Tsai-Ming Hsieh:
A logic difference generator with spare cells consideration for ECO synthesis. ISQED 2015: 577-580 - 2011
- [c3]Jui-Hung Hung, Yao-Kai Yeh, Yung-Sheng Tseng, Tsai-Ming Hsieh:
A new ECO technology for functional changes and removing timing violations. ISQED 2011: 634-638 - 2010
- [c2]Jui-Hung Hung, Yao-Kai Yeh, Yung-Sheng Tseng, Tsai-Ming Hsieh:
Technology remapping for engineering change with wirelength consideration. ISCAS 2010: 2602-2605 - 2006
- [c1]Tsung-Han Tsai, Jui-Hung Hung:
Content-Based Retrieval of Mp3 Songs For One Singer Using Quantization Tree Indexing and Melody-Line Tracking Method. ICASSP (5) 2006: 505-508
Informal and Other Publications
- 2022
- [i1]Yuan-Yu Chang, Sheng-Tang Wong, Emmanuel Oluwatobi Salawu, Yu-Xuan Wang, Jui-Hung Hung, Lee-Wei Yang:
Full-privacy secured search engine empowered by efficient genome-mapping algorithms. CoRR abs/2201.00696 (2022)
Coauthor Index
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