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Falk Schreiber
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Publications
- 2022
- [j75]Falk Schreiber, Tobias Czauderna:
Design considerations for representing systems biology information with the Systems Biology Graphical Notation. J. Integr. Bioinform. 19(2) (2022) - [j74]Michael Aichem, Karsten Klein, Tobias Czauderna, Dimitar Garkov, Jinxin Zhao, Jian Li, Falk Schreiber:
Towards a hybrid user interface for the visual exploration of large biomolecular networks using virtual reality. J. Integr. Bioinform. 19(4) (2022) - 2021
- [j69]Michael Aichem, Tobias Czauderna, Yan Zhu, Jinxin Zhao, Matthias Klapperstück, Karsten Klein, Jian Li, Falk Schreiber:
Visual exploration of large metabolic models. Bioinform. 37(23): 4460-4468 (2021) - 2020
- [j64]Falk Schreiber, Björn Sommer, Tobias Czauderna, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Dagmar Waltemath:
Specifications of standards in systems and synthetic biology: status and developments in 2020. J. Integr. Bioinform. 17(2-3) (2020) - 2019
- [j62]Adrien Rougny, Vasundra Touré, Stuart L. Moodie, Irina Balaur, Tobias Czauderna, Hanna Borlinghaus, Ugur Dogrusoz, Alexander Mazein, Andreas Dräger, Michael L. Blinov, Alice Villéger, Robin Haw, Emek Demir, Huaiyu Mi, Anatoly A. Sorokin, Falk Schreiber, Augustin Luna:
Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0. J. Integr. Bioinform. 16(2) (2019) - 2018
- [j56]Matthias Klapperstück, Tobias Czauderna, Cagatay Goncu, Jaroslaw Glowacki, Tim Dwyer, Falk Schreiber, Kim Marriott:
ContextuWall: Multi-site collaboration using display walls. J. Vis. Lang. Comput. 46: 35-42 (2018) - [p4]Tobias Czauderna, Jason Haga, Jinman Kim, Matthias Klapperstück, Karsten Klein, Torsten W. Kuhlen, Steffen Oeltze-Jafra, Björn Sommer, Falk Schreiber:
Immersive Analytics Applications in Life and Health Sciences. Immersive Analytics 2018: 289-330 - 2017
- [c41]Björn Sommer, David G. Barnes, Sarah E. Boyd, Tom Chandler, Maxime Cordeil, Tobias Czauderna, Matthias Klapperstück, Karsten Klein, Toàn D. Nguyên, Hieu T. Nim, Kingsley Stephens, Dany Vohl, Stephen Jia Wang, Elliott Wilson, Yan Zhu, Jian Li, Jon McCormack, Kim Marriott, Falk Schreiber:
3D-Stereoscopic Immersive Analytics Projects at Monash University and University of Konstanz. SD&A 2017: 179-187 - 2016
- [j52]Dagmar Waltemath, Jonathan R. Karr, Frank T. Bergmann, Vijayalakshmi Chelliah, Michael Hucka, Marcus Krantz, Wolfram Liebermeister, Pedro Mendes, Chris J. Myers, Pinar Pir, Begum Alaybeyoglu, Naveen K. Aranganathan, Kambiz Baghalian, Arne T. Bittig, Paulo E. Pinto Burke, Matteo Cantarelli, Yin Hoon Chew, Rafael S. Costa, Joseph Cursons, Tobias Czauderna, Arthur P. Goldberg, Harold F. Gómez, Jens Hahn, Tuure Hameri, Daniel F. Hernandez Gardiol, Denis Kazakiewicz, Ilya Kiselev, Vincent Knight-Schrijver, Christian Knüpfer, Matthias König, Daewon Lee, Audald Lloret-Villas, Nikita Mandrik, J. Kyle Medley, Bertrand Moreau, Hojjat Naderi-Meshkin, Sucheendra K. Palaniappan, Daniel Priego-Espinosa, Martin Scharm, Mahesh Sharma, Kieran Smallbone, Natalie J. Stanford, Je-Hoon Song, Tom Theile, Milenko Tokic, Namrata Tomar, Vasundra Touré, Jannis Uhlendorf, Thawfeek M. Varusai, Leandro H. Watanabe, Florian Wendland, Markus Wolfien, James T. Yurkovich, Yan Zhu, Argyris Zardilis, Anna Zhukova, Falk Schreiber:
Toward Community Standards and Software for Whole-Cell Modeling. IEEE Trans. Biomed. Eng. 63(10): 2007-2014 (2016) - [c36]Matthias Klapperstück, Tobias Czauderna, Cagatay Goncu, Jaroslaw Glowacki, Tim Dwyer, Falk Schreiber, Kim Marriott:
ContextuWall: Peer Collaboration Using (Large) Displays. BDVA 2016: 1-8 - [c34]Björn Sommer, Andreas Hamacher, Owen Kaluza, Tobias Czauderna, Matthias Klapperstück, Niklas Biere, Marco Civico, Bruce H. Thomas, David G. Barnes, Falk Schreiber:
Stereoscopic Space Map - Semi-immersive Configuration of 3D-stereoscopic Tours in Multi-display Environments. SD&A 2016: 1-9 - 2015
- [j50]Huaiyu Mi, Falk Schreiber, Stuart L. Moodie, Tobias Czauderna, Emek Demir, Robin Haw, Augustin Luna, Nicolas Le Novère, Anatoly A. Sorokin, Alice Villéger:
Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2 . J. Integr. Bioinform. 12(2) (2015) - [j48]Anatoly A. Sorokin, Nicolas Le Novère, Augustin Luna, Tobias Czauderna, Emek Demir, Robin Haw, Huaiyu Mi, Stuart L. Moodie, Falk Schreiber, Alice Villéger:
Systems Biology Graphical Notation: Entity Relationship language Level 1 Version 2. J. Integr. Bioinform. 12(2) (2015) - [c32]Tom Chandler, Maxime Cordeil, Tobias Czauderna, Tim Dwyer, Jaroslaw Glowacki, Cagatay Goncu, Matthias Klapperstück, Karsten Klein, Kim Marriott, Falk Schreiber, Elliott Wilson:
Immersive Analytics. BDVA 2015: 73-80 - 2013
- [j43]Tobias Czauderna, Michael Wybrow, Kim Marriott, Falk Schreiber:
Conversion of KEGG metabolic pathways to SBGN maps including automatic layout. BMC Bioinform. 14: 250 (2013) - [j42]Torsten Vogt, Tobias Czauderna, Falk Schreiber:
Translation of SBGN maps: Process Description to Activity Flow. BMC Syst. Biol. 7: 115 (2013) - [j41]Finja Büchel, Nicolas Rodriguez, Neil Swainston, Clemens Wrzodek, Tobias Czauderna, Roland Keller, Florian Mittag, Michael Schubert, Mihai Glont, Martin Golebiewski, Martijn P. van Iersel, Sarah M. Keating, Matthias Rall, Michael Wybrow, Henning Hermjakob, Michael Hucka, Douglas B. Kell, Wolfgang Müller, Pedro Mendes, Andreas Zell, Claudine Chaouiya, Julio Saez-Rodriguez, Falk Schreiber, Camille Laibe, Andreas Dräger, Nicolas Le Novère:
Path2Models: large-scale generation of computational models from biochemical pathway maps. BMC Syst. Biol. 7: 116 (2013) - [c28]Christian Colmsee, Tobias Czauderna, Eva Grafahrend-Belau, Anja Hartmann, Matthias Lange, Martin Mascher, Stephan Weise, Uwe Scholz, Falk Schreiber:
OPTIMAS-DW, MetaCrop and VANTED: A Case Study for Data Integration, Curation and Visualisation in Life Sciences. GI-Jahrestagung 2013: 1834-1840 - 2012
- [j37]Martijn P. van Iersel, Alice Villéger, Tobias Czauderna, Sarah E. Boyd, Frank T. Bergmann, Augustin Luna, Emek Demir, Anatoly A. Sorokin, Ugur Dogrusöz, Yukiko Matsuoka, Akira Funahashi, Mirit I. Aladjem, Huaiyu Mi, Stuart L. Moodie, Hiroaki Kitano, Nicolas Le Novère, Falk Schreiber:
Software support for SBGN maps: SBGN-ML and LibSBGN. Bioinform. 28(15): 2016-2021 (2012) - [j35]Hendrik Rohn, Astrid Junker, Anja Hartmann, Eva Grafahrend-Belau, Hendrik Treutler, Matthias Klapperstück, Tobias Czauderna, Christian Klukas, Falk Schreiber:
VANTED v2: a framework for systems biology applications. BMC Syst. Biol. 6: 139 (2012) - [j31]Falk Schreiber, Christian Colmsee, Tobias Czauderna, Eva Grafahrend-Belau, Anja Hartmann, Astrid Junker, Björn H. Junker, Matthias Klapperstück, Uwe Scholz, Stephan Weise:
MetaCrop 2.0: managing and exploring information about crop plant metabolism. Nucleic Acids Res. 40(Database-Issue): 1173-1177 (2012) - 2011
- [j29]Anja Hartmann, Tobias Czauderna, Roberto Hoffmann, Nils Stein, Falk Schreiber:
HTPheno: An Image Analysis Pipeline for High-Throughput Plant Phenotyping. BMC Bioinform. 12: 148 (2011) - 2010
- [j26]Tobias Czauderna, Christian Klukas, Falk Schreiber:
Editing, validating and translating of SBGN maps. Bioinform. 26(18): 2340-2341 (2010) - [j23]Klaus Hippe, Christian Colmsee, Tobias Czauderna, Eva Grafahrend-Belau, Björn H. Junker, Christian Klukas, Uwe Scholz, Falk Schreiber, Stephan Weise:
Novel Developments of the MetaCrop Information System for Facilitating Systems Biological Approaches. J. Integr. Bioinform. 7(3) (2010)
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