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Wolfram Liebermeister
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2020 – today
- 2023
- [j18]Hugo Dourado, Wolfram Liebermeister, Oliver Ebenhöh, Martin J. Lercher:
Mathematical properties of optimal fluxes in cellular reaction networks at balanced growth. PLoS Comput. Biol. 19(6) (2023) - 2022
- [j17]Bilal Shaikh, Lucian P. Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S. Andrews, Azraf Anwar, Moritz E. Beber, Frank T. Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G. Bard Ermentrout, James R. Faeder, Andrew P. Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H. Gennari, Padraig Gleeson, Anne Goelzer, Zachary B. Haiman, Jan Hasenauer, Joseph L. Hellerstein, Henning Hermjakob, Stefan Hoops, Jon C. Ison, Diego Jahn, Henry V. Jakubowski, Ryann Jordan, Matús Kalas, Matthias König, Wolfram Liebermeister, Rahuman S. Malik-Sheriff, Synchon Mandal, Robert A. McDougal, J. Kyle Medley, Pedro Mendes, Robert Müller, Chris J. Myers, Aurélien Naldi, Tung V. N. Nguyen, David P. Nickerson, Brett G. Olivier, Drashti Patoliya, Loïc Paulevé, Linda R. Petzold, Ankita Priya, Anand K. Rampadarath, Johann M. Rohwer, Ali Sinan Saglam, Dilawar Singh, Ankur Sinha, Jacky L. Snoep, Hugh Sorby, Ryan K. Spangler, Jörn Starruß, Payton J. Thomas, David D. van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P. Goldberg, James C. Schaff, Michael L. Blinov, Herbert M. Sauro, Ion I. Moraru, Jonathan R. Karr:
BioSimulators: a central registry of simulation engines and services for recommending specific tools. Nucleic Acids Res. 50(W1): 108-114 (2022) - [i3]Bilal Shaikh, Lucian P. Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S. Andrews, Azraf Anwar, Moritz E. Beber, Frank T. Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G. Bard Ermentrout, James R. Faeder, Andrew P. Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H. Gennari, Padraig Gleeson, Anne Goelzer, Zachary B. Haiman, Joseph L. Hellerstein, Stefan Hoops, Jon C. Ison, Diego Jahn, Henry V. Jakubowski, Ryann Jordan, Matús Kalas, Matthias König, Wolfram Liebermeister, Synchon Mandal, Robert A. McDougal, J. Kyle Medley, Pedro Mendes, Robert Müller, Chris J. Myers, Aurélien Naldi, Tung V. N. Nguyen, David P. Nickerson, Brett G. Olivier, Drashti Patoliya, Loïc Paulevé, Linda R. Petzold, Ankita Priya, Anand K. Rampadarath, Johann M. Rohwer, Ali Sinan Saglam, Dilawar Singh, Ankur Sinha, Jacky L. Snoep, Hugh Sorby, Ryan K. Spangler, Jörn Starruß, Payton J. Thomas, David D. van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P. Goldberg, Michael L. Blinov, Herbert M. Sauro, Ion I. Moraru, Jonathan R. Karr:
BioSimulators: a central registry of simulation engines and services for recommending specific tools. CoRR abs/2203.06732 (2022) - 2020
- [i2]Jonathan R. Karr, Wolfram Liebermeister, Arthur P. Goldberg, John A. P. Sekar, Bilal Shaikh:
Structured spreadsheets with ObjTables enable data reuse and integration. CoRR abs/2005.05227 (2020)
2010 – 2019
- 2019
- [j16]Timo Lubitz, Wolfram Liebermeister:
Parameter balancing: consistent parameter sets for kinetic metabolic models. Bioinform. 35(19): 3857-3858 (2019) - 2018
- [j15]Ron Henkel, Robert Hoehndorf, Tim Kacprowski, Christian Knüpfer, Wolfram Liebermeister, Dagmar Waltemath:
Notions of similarity for systems biology models. Briefings Bioinform. 19(1): 77-88 (2018) - [j14]Meike T. Wortel, Elad Noor, Michael Ferris, Frank J. Bruggeman, Wolfram Liebermeister:
Metabolic enzyme cost explains variable trade-offs between microbial growth rate and yield. PLoS Comput. Biol. 14(2) (2018) - 2017
- [j13]Ron Henkel, Robert Hoehndorf, Tim Kacprowski, Christian Knüpfer, Wolfram Liebermeister, Dagmar Waltemath:
Notions of similarity for systems biology models. Briefings Bioinform. 18(5): 902 (2017) - 2016
- [j12]Timo Lubitz, Jens Hahn, Frank T. Bergmann, Elad Noor, Edda Klipp, Wolfram Liebermeister:
SBtab: a flexible table format for data exchange in systems biology. Bioinform. 32(16): 2559-2561 (2016) - [j11]Elad Noor, Avi I. Flamholz, Arren Bar-Even, Dan Davidi, Ron Milo, Wolfram Liebermeister:
The Protein Cost of Metabolic Fluxes: Prediction from Enzymatic Rate Laws and Cost Minimization. PLoS Comput. Biol. 12(11) (2016) - [j10]Dagmar Waltemath, Jonathan R. Karr, Frank T. Bergmann, Vijayalakshmi Chelliah, Michael Hucka, Marcus Krantz, Wolfram Liebermeister, Pedro Mendes, Chris J. Myers, Pinar Pir, Begum Alaybeyoglu, Naveen K. Aranganathan, Kambiz Baghalian, Arne T. Bittig, Paulo E. Pinto Burke, Matteo Cantarelli, Yin Hoon Chew, Rafael S. Costa, Joseph Cursons, Tobias Czauderna, Arthur P. Goldberg, Harold F. Gómez, Jens Hahn, Tuure Hameri, Daniel F. Hernandez Gardiol, Denis Kazakiewicz, Ilya Kiselev, Vincent Knight-Schrijver, Christian Knüpfer, Matthias König, Daewon Lee, Audald Lloret-Villas, Nikita Mandrik, J. Kyle Medley, Bertrand Moreau, Hojjat Naderi-Meshkin, Sucheendra K. Palaniappan, Daniel Priego-Espinosa, Martin Scharm, Mahesh Sharma, Kieran Smallbone, Natalie J. Stanford, Je-Hoon Song, Tom Theile, Milenko Tokic, Namrata Tomar, Vasundra Touré, Jannis Uhlendorf, Thawfeek M. Varusai, Leandro H. Watanabe, Florian Wendland, Markus Wolfien, James T. Yurkovich, Yan Zhu, Argyris Zardilis, Anna Zhukova, Falk Schreiber:
Toward Community Standards and Software for Whole-Cell Modeling. IEEE Trans. Biomed. Eng. 63(10): 2007-2014 (2016) - 2015
- [j9]Lucian Paul Smith, Michael Hucka, Stefan Hoops, Andrew Finney, Martin Ginkel, Chris J. Myers, Ion I. Moraru, Wolfram Liebermeister:
SBML Level 3 package: Hierarchical Model Composition, Version 1 Release 3. J. Integr. Bioinform. 12(2) (2015) - 2014
- [j8]Elad Noor, Arren Bar-Even, Avi I. Flamholz, Ed Reznik, Wolfram Liebermeister, Ron Milo:
Pathway Thermodynamics Highlights Kinetic Obstacles in Central Metabolism. PLoS Comput. Biol. 10(2) (2014) - 2012
- [j7]Marvin Schulz, Edda Klipp, Wolfram Liebermeister:
Propagating semantic information in biochemical network models. BMC Bioinform. 13: 18 (2012) - 2010
- [j6]Falko Krause, Jannis Uhlendorf, Timo Lubitz, Marvin Schulz, Edda Klipp, Wolfram Liebermeister:
Annotation and merging of SBML models with semanticSBML. Bioinform. 26(3): 421-422 (2010) - [j5]Keren Yizhak, Tomer Benyamini, Wolfram Liebermeister, Eytan Ruppin, Tomer Shlomi:
Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model. Bioinform. 26(12): 255-260 (2010) - [j4]Wolfram Liebermeister, Jannis Uhlendorf, Edda Klipp:
Modular rate laws for enzymatic reactions: thermodynamics, elasticities and implementation. Bioinform. 26(12): 1528-1534 (2010) - [c3]Falko Krause, Marvin Schulz, Timo Lubitz, Wolfram Liebermeister:
semanticsSBML 2.0 - A Collection of Online Services for SBML Models. SWAT4LS 2010 - [i1]Falko Krause, Marvin Schulz, Timo Lubitz, Wolfram Liebermeister:
semanticSBML 2.0 - A Collection of Online Services for SBML Models. CoRR abs/1012.1664 (2010)
2000 – 2009
- 2009
- [b1]Edda Klipp, Wolfram Liebermeister, Christoph K. Wierling, Axel Kowald, Hans Lehrach:
Systems Biology - a Textbook. Wiley 2009, ISBN 978-3-527-31874-2, pp. I-XXI, 1-569 - 2007
- [j3]Simon Borger, Jannis Uhlendorf, Anselm Helbig, Wolfram Liebermeister:
Integration of Enzyme Kinetic Data from Various Sources. Silico Biol. 7(6): 73-79 (2007) - 2005
- [j2]Wolfram Liebermeister:
Predicting Physiological Concentrations of Metabolites from Their Molecular Structure. J. Comput. Biol. 12(10): 1307-1315 (2005) - 2002
- [j1]Wolfram Liebermeister:
Linear modes of gene expression determined by independent component analysis. Bioinform. 18(1): 51-60 (2002) - 2001
- [c2]Wolfram Liebermeister:
Independent component analysis of gene expression data. German Conference on Bioinformatics 2001: 205-206
1990 – 1999
- 1999
- [c1]Dirk Holste, Dieter Beule, Wolfram Liebermeister, Johannes Schuchhardt, Hanspeter Herzel:
Mutual Information Analysis of Surrogate Gene Expression Data. German Conference on Bioinformatics 1999: 201-204
Coauthor Index
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