
Andreas Dräger
Person information
- affiliation: University of Tübingen, Center for Bioinformatics (ZBIT), Germany
- affiliation: University of California, San Diego, Department of Bioengineering, CA, USA
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2020 – today
- 2020
- [j31]Lea Buchweitz, James T. Yurkovich, Christoph Blessing, Veronika Kohler, Fabian Schwarzkopf, Zachary A. King
, Laurence Yang
, Freyr Jóhannsson
, Ólafur E. Sigurjónsson, Ottar Rolfsson
, Julian Heinrich
, Andreas Dräger
:
Visualizing metabolic network dynamics through time-series metabolomic data. BMC Bioinform. 21(1): 130 (2020) - [c7]Michael Krone, Andreas Dräger, Ebru Cobanoglu, Manuel Otto Harke, Miriam Hoene, Cora Weigert, Rainer Lehmann:
A Web-based Visual Analytics Application for Biological Networks. EuroVis (Posters) 2020: 41-43
2010 – 2019
- 2019
- [j30]Maxwell Lewis Neal
, Matthias König
, David P. Nickerson
, Goksel Misirli
, Reza Kalbasi, Andreas Dräger
, Koray Atalag, Vijayalakshmi Chelliah, Michael T. Cooling
, Daniel L. Cook, Sharon M. Crook
, Miguel de Alba, Samuel H. Friedman
, Alan Garny, John H. Gennari
, Padraig Gleeson
, Martin Golebiewski, Michael Hucka
, Nick S. Juty, Chris J. Myers, Brett G. Olivier
, Herbert M. Sauro, Martin Scharm, Jacky L. Snoep
, Vasundra Touré, Anil Wipat
, Olaf Wolkenhauer
, Dagmar Waltemath
:
Harmonizing semantic annotations for computational models in biology. Briefings Bioinform. 20(2): 540-550 (2019) - [j29]Paolo Romano, Arnaud Céol
, Andreas Dräger
, Antonino Fiannaca, Rosalba Giugno, Massimo La Rosa, Luciano Milanesi
, Ulrich Pfeffer, Riccardo Rizzo, Soo-Yong Shin, Junfeng Xia, Alfonso Urso:
The 2017 Network Tools and Applications in Biology (NETTAB) workshop: aims, topics and outcomes. BMC Bioinform. 20-S(4): 125:1-125:9 (2019) - [j28]Michael Hucka
, Frank T. Bergmann
, Claudine Chaouiya
, Andreas Dräger
, Stefan Hoops
, Sarah M. Keating
, Matthias König
, Nicolas Le Novère, Chris J. Myers
, Brett G. Olivier
, Sven Sahle, James C. Schaff
, Rahuman S. Malik-Sheriff
, Lucian P. Smith
, Dagmar Waltemath
, Darren J. Wilkinson
, Fengkai Zhang
:
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2. J. Integr. Bioinform. 16(2) (2019) - [j27]Adrien Rougny
, Vasundra Touré
, Stuart L. Moodie, Irina Balaur
, Tobias Czauderna
, Hanna Borlinghaus
, Ugur Dogrusoz
, Alexander Mazein
, Andreas Dräger
, Michael L. Blinov
, Alice Villéger, Robin Haw
, Emek Demir, Huaiyu Mi
, Anatoly A. Sorokin
, Falk Schreiber, Augustin Luna
:
Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0. J. Integr. Bioinform. 16(2) (2019) - 2018
- [j26]Michael Hucka, Frank T. Bergmann
, Andreas Dräger
, Stefan Hoops, Sarah M. Keating
, Nicolas Le Novère, Chris J. Myers
, Brett G. Olivier
, Sven Sahle, James C. Schaff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson:
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core. J. Integr. Bioinform. 15(1) (2018) - [j25]Michael Hucka
, Frank T. Bergmann
, Andreas Dräger
, Stefan Hoops, Sarah M. Keating
, Nicolas Le Novère, Chris J. Myers
, Brett G. Olivier
, Sven Sahle, James C. Schaff, Lucian P. Smith
, Dagmar Waltemath, Darren J. Wilkinson
:
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core. J. Integr. Bioinform. 15(1) (2018) - 2016
- [j24]Bin Du, Daniel C. Zielinski, Erol S. Kavvas, Andreas Dräger
, Justin Tan, Zhen Zhang, Kayla E. Ruggiero, Garri A. Arzumanyan, Bernhard O. Palsson:
Evaluation of rate law approximations in bottom-up kinetic models of metabolism. BMC Syst. Biol. 10: 40 (2016) - [j23]Zachary A. King, Justin Lu, Andreas Dräger
, Philip Miller, Stephen Federowicz, Joshua A. Lerman
, Ali Ebrahim
, Bernhard O. Palsson, Nathan E. Lewis
:
BiGG Models: A platform for integrating, standardizing and sharing genome-scale models. Nucleic Acids Res. 44(Database-Issue): 515-522 (2016) - [j22]Roland Keller, Marcus Klein, Maria Thomas
, Andreas Dräger
, Ute Metzger, Markus F. Templin, Thomas O. Joos, Wolfgang E. Thasler, Andreas Zell, Ulrich M. Zanger:
Coordinating Role of RXRα in Downregulating Hepatic Detoxification during Inflammation Revealed by Fuzzy-Logic Modeling. PLoS Comput. Biol. 12(1) (2016) - 2015
- [j21]Nicolas Rodriguez
, Alex Thomas, Leandro H. Watanabe, Ibrahim Y. Vazirabad, Victor Kofia, Harold F. Gómez, Florian Mittag
, Jakob Matthes, Jan Rudolph, Finja Wrzodek
, Eugen Netz
, Alexander Diamantikos, Johannes Eichner, Roland Keller, Clemens Wrzodek
, Sebastian Fröhlich, Nathan E. Lewis
, Chris J. Myers
, Nicolas Le Novère, Bernhard Ø. Palsson, Michael Hucka
, Andreas Dräger
:
JSBML 1.0: providing a smorgasbord of options to encode systems biology models. Bioinform. 31(20): 3383-3386 (2015) - [j20]Andreas Dräger
, Daniel C. Zielinski, Roland Keller, Matthias Rall, Johannes Eichner, Bernhard O. Palsson, Andreas Zell:
SBMLsqueezer 2: context-sensitive creation of kinetic equations in biochemical networks. BMC Syst. Biol. 9: 68 (2015) - [j19]Michael Hucka
, Frank T. Bergmann
, Andreas Dräger
, Stefan Hoops, Sarah M. Keating
, Nicolas Le Novère, Chris J. Myers
, Brett G. Olivier
, Sven Sahle, James C. Schaff, Lucian P. Smith
, Dagmar Waltemath, Darren J. Wilkinson
:
Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions. J. Integr. Bioinform. 12(2) (2015) - [j18]Zachary A. King, Andreas Dräger
, Ali Ebrahim
, Nikolaus Sonnenschein
, Nathan E. Lewis
, Bernhard O. Palsson:
Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways. PLoS Comput. Biol. 11(8) (2015) - 2014
- [j17]Alexander Dörr, Roland Keller, Andreas Zell, Andreas Dräger
:
SBMLSimulator: A Java Tool for Model Simulation and Parameter Estimation in Systems Biology. Comput. 2(4): 246-257 (2014) - 2013
- [j16]Sebastian Vlaic, Bianca Hoffmann, Peter Kupfer, Michael Weber, Andreas Dräger
:
GRN2SBML: automated encoding and annotation of inferred gene regulatory networks complying with SBML. Bioinform. 29(17): 2216-2217 (2013) - [j15]Clemens Wrzodek
, Finja Büchel
, Manuel Ruff, Andreas Dräger
, Andreas Zell:
Precise generation of systems biology models from KEGG pathways. BMC Syst. Biol. 7: 15 (2013) - [j14]Roland Keller, Alexander Dörr, Akito Tabira, Akira Funahashi
, Michael J. Ziller, Richard R. Adams
, Nicolas Rodriguez
, Nicolas Le Novère, Noriko Hiroi
, Hannes Planatscher, Andreas Zell, Andreas Dräger
:
The systems biology simulation core algorithm. BMC Syst. Biol. 7: 55 (2013) - [j13]Finja Büchel
, Nicolas Rodriguez
, Neil Swainston, Clemens Wrzodek
, Tobias Czauderna
, Roland Keller, Florian Mittag
, Michael Schubert
, Mihai Glont
, Martin Golebiewski
, Martijn P. van Iersel
, Sarah M. Keating
, Matthias Rall, Michael Wybrow
, Henning Hermjakob
, Michael Hucka
, Douglas B. Kell
, Wolfgang Müller, Pedro Mendes
, Andreas Zell, Claudine Chaouiya
, Julio Saez-Rodriguez
, Falk Schreiber, Camille Laibe
, Andreas Dräger
, Nicolas Le Novère:
Path2Models: large-scale generation of computational models from biochemical pathway maps. BMC Syst. Biol. 7: 116 (2013) - [j12]Claudine Chaouiya
, Duncan Bérenguier, Sarah M. Keating
, Aurélien Naldi
, Martijn P. van Iersel
, Nicolas Rodriguez
, Andreas Dräger
, Finja Büchel
, Thomas Cokelaer
, Bryan M. Kowal, Benjamin Wicks, Emanuel J. V. Gonçalves
, Julien Dorier
, Michel Page, Pedro T. Monteiro
, Axel von Kamp, Ioannis Xenarios, Hidde de Jong
, Michael Hucka
, Steffen Klamt
, Denis Thieffry
, Nicolas Le Novère, Julio Saez-Rodriguez
, Tomás Helikar
:
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools. BMC Syst. Biol. 7: 135 (2013) - 2012
- [j11]Matthias König
, Andreas Dräger
, Hermann-Georg Holzhütter:
CySBML: a Cytoscape plugin for SBML. Bioinform. 28(18): 2402-2403 (2012) - [j10]Finja Büchel
, Clemens Wrzodek
, Florian Mittag
, Andreas Dräger
, Johannes Eichner, Nicolas Rodriguez
, Nicolas Le Novère, Andreas Zell:
Qualitative translation of relations from BioPAX to SBML qual. Bioinform. 28(20): 2648-2653 (2012) - 2011
- [b1]Andreas Dräger:
Computational Modeling of Biochemical Networks. Eberhard Karls University of Tübingen, 2011, ISBN 978-3-86853-850-2, pp. 1-254 - [j9]Andreas Dräger
, Nicolas Rodriguez
, Marine Dumousseau, Alexander Dörr, Clemens Wrzodek
, Nicolas Le Novère, Andreas Zell, Michael Hucka
:
JSBML: a flexible Java library for working with SBML. Bioinform. 27(15): 2167-2168 (2011) - [j8]Clemens Wrzodek
, Andreas Dräger
, Andreas Zell:
KEGGtranslator: visualizing and converting the KEGG PATHWAY database to various formats. Bioinform. 27(16): 2314-2315 (2011) - [j7]Adrian Schröder, Johannes Wollnik, Clemens Wrzodek
, Andreas Dräger
, Michael Bonin, Oliver Burk, Maria Thomas
, Wolfgang E. Thasler, Ulrich M. Zanger, Andreas Zell:
Inferring statin-induced gene regulatory relationships in primary human hepatocytes. Bioinform. 27(18): 2473-2477 (2011) - [c6]Adrian Schröder, Clemens Wrzodek
, Johannes Wollnik, Andreas Dräger
, Dierk Wanke, Kenneth W. Berendzen, Andreas Zell:
Inferring transcriptional regulators for sets of co-expressed genes by multi-objective evolutionary optimization. IEEE Congress on Evolutionary Computation 2011: 2285-2292 - 2010
- [j6]Clemens Wrzodek
, Adrian Schröder, Andreas Dräger
, Dierk Wanke, Kenneth W. Berendzen
, Marcel Kronfeld, Klaus Harter, Andreas Zell:
ModuleMaster: A new tool to decipher transcriptional regulatory networks. Biosyst. 99(1): 79-81 (2010) - [c5]Sandro Lambeck, Andreas Dräger, Reinhard Guthke:
Network Inference by Considering Multiple Objectives: Insights from In Vivo Transcriptomic Data Generated by a Synthetic Network. BIOCOMP 2010: 734-742
2000 – 2009
- 2009
- [j5]Andreas Dräger
, Hannes Planatscher, Dieudonné Motsou Wouamba, Adrian Schröder, Michael Hucka
, Lukas Endler
, Martin Golebiewski
, Wolfgang Müller, Andreas Zell:
SBML2LATEX: Conversion of SBML files into human-readable reports. Bioinform. 25(11): 1455-1456 (2009) - [j4]Andreas Dräger
, Marcel Kronfeld, Michael J. Ziller, Jochen Supper, Hannes Planatscher, Jørgen B. Magnus, Marco Oldiges
, Oliver Kohlbacher
, Andreas Zell:
Modeling metabolic networks in C. glutamicum: a comparison of rate laws in combination with various parameter optimization strategies. BMC Syst. Biol. 3: 5 (2009) - [j3]Jochen Supper, Lucía Spangenberg, Hannes Planatscher, Andreas Dräger
, Adrian Schröder, Andreas Zell:
BowTieBuilder: modeling signal transduction pathways. BMC Syst. Biol. 3: 67 (2009) - [c4]Marcel Kronfeld, Andreas Dräger, Moritz Aschoff, Andreas Zell:
On the Benefits of Multimodal Optimization for Metablic Network Modeling. GCB 2009: 191-200 - 2008
- [j2]Richard C. G. Holland
, Thomas A. Down, Matthew R. Pocock, Andreas Prlic
, David S. Huen
, Keith James, Sylvain Foisy, Andreas Dräger
, Andy Yates
, Michael L. Heuer, Mark J. Schreiber:
BioJava: an open-source framework for bioinformatics. Bioinform. 24(18): 2096-2097 (2008) - [j1]Andreas Dräger
, Nadine Hassis, Jochen Supper, Adrian Schröder, Andreas Zell:
SBMLsqueezer: A CellDesigner plug-in to generate kinetic rate equations for biochemical networks. BMC Syst. Biol. 2: 39 (2008) - 2007
- [c3]Jochen Supper, Holger Fröhlich, Christian Spieth, Andreas Dräger, Andreas Zell:
Inferring Gene Regulatory Networks by Machine Learning Methods. APBC 2007: 247-256 - [c2]Andreas Dräger
, Jochen Supper, Hannes Planatscher, Jørgen B. Magnus, Marco Oldiges
, Andreas Zell:
Comparing various evolutionary algorithms on the parameter optimization of the valine and leucine biosynthesis in corynebacterium glutamicum. IEEE Congress on Evolutionary Computation 2007: 620-627 - [c1]Andreas Dräger
, Marcel Kronfeld, Jochen Supper, Hannes Planatscher, Jørgen B. Magnus, Marco Oldiges
, Andreas Zell:
Benchmarking evolutionary algorithms on convenience kinetics modelsof the valine and leucine biosynthesis in C. glutamicum. IEEE Congress on Evolutionary Computation 2007: 896-903
Coauthor Index
aka: Nicolas Le Novère

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