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ORCIDChristopher J. Rawlings
Publications
- 2021
[i4]Hugh F. Williamson
, Julia Brettschneider, Mario Cáccamo, Robert P. Davey, Carole A. Goble, Paul J. Kersey, Sean T. May, Richard J. Morris, Richard Ostler, Tony P. Pridmore, Christopher J. Rawlings, David J. Studholme, Sotirios A. Tsaftaris, Sabina Leonelli:
Data management challenges for artificial intelligence in plant and agricultural research. F1000Research 10: 324 (2021)- 2018
- [j27]Marco Brandizi, Ajit Singh, Christopher J. Rawlings, Keywan Hassani-Pak:
Towards FAIRer Biological Knowledge Networks Using a Hybrid Linked Data and Graph Database Approach. J. Integr. Bioinform. 15(3) (2018) - [i3]Ajit Singh, Christopher J. Rawlings, Keywan Hassani-Pak:
KnetMaps: a BioJS component to visualize biological knowledge networks. F1000Research 7: 1651 (2018) - 2017
- [j26]Irina Balaur, Alexander Mazein, Mansoor A. S. Saqi, Artem Lysenko, Christopher J. Rawlings:
Recon2Neo4j: applying graph database technologies for managing comprehensive genome-scale networks. Bioinform. 33(7): 1096-1098 (2017) - [j25]Irina Balaur, Mansoor A. S. Saqi, Ana Barat, Artem Lysenko, Alexander Mazein, Christopher J. Rawlings, Heather J. Ruskin, Charles Auffray:
EpiGeNet: A Graph Database of Interdependencies Between Genetic and Epigenetic Events in Colorectal Cancer. J. Comput. Biol. 24(10): 969-980 (2017) - [j24]Keywan Hassani-Pak, Christopher J. Rawlings:
Knowledge Discovery in Biological Databases for Revealing Candidate Genes Linked to Complex Phenotypes. J. Integr. Bioinform. 14(1) (2017) - 2016
- [j23]Artem Lysenko, Irina A. Roznovat, Mansoor A. S. Saqi, Alexander Mazein, Christopher J. Rawlings, Charles Auffray:
Representing and querying disease networks using graph databases. BioData Min. 9: 23 (2016) - 2014
- [j22]Jan Taubert, Keywan Hassani-Pak, Nathalie Castells-Brooke, Christopher J. Rawlings:
Ondex Web: web-based visualization and exploration of heterogeneous biological networks. Bioinform. 30(7): 1034-1035 (2014) - 2013
- [c14]Artem Lysenko, Jacek Grzebyta, Matthew Morritt Hindle, Christopher J. Rawlings, Andrea Splendiani:
A Framework for Mining Life Sciences Data on the Semantic Web in an Interactive, Graph-Based Environment. CIBB 2013: 225-237 - 2012
- [c13]Laura Bennett, Artem Lysenko, Lazaros G. Papageorgiou, Martin Urban, Kim E. Hammond-Kosack, Christopher J. Rawlings, Mansoor A. S. Saqi, Sophia Tsoka:
Detection of Multi-clustered Genes and Community Structure for the Plant Pathogenic Fungus Fusarium graminearum. CMSB 2012: 69-86 - 2011
- [j21]Artem Lysenko, Michael Defoin-Platel, Keywan Hassani-Pak, Jan Taubert, Charlie Hodgman, Christopher J. Rawlings, Mansoor A. S. Saqi:
Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis. BMC Bioinform. 12: 203 (2011) - [j20]Michael Defoin-Platel, Matthew Morritt Hindle, Artem Lysenko, Stephen J. Powers, Dimah Z. Habash, Christopher J. Rawlings, Mansoor A. S. Saqi:
AIGO: Towards a unified framework for the Analysis and the Inter-comparison of GO functional annotations. BMC Bioinform. 12: 431 (2011) - [j19]Victor Lesk, Jan Taubert, Christopher J. Rawlings, Stuart J. Dunbar, Stephen H. Muggleton:
WIBL: Workbench for Integrative Biological Learning. J. Integr. Bioinform. 8(2) (2011) - [i2]Andrea Splendiani, Christopher J. Rawlings, Shao-Chih Kuo, Robert Stevens, Phillip W. Lord:
Lost in translation: data integration tools meet the Semantic Web (experiences from the Ondex project). CoRR abs/1103.4749 (2011) - 2010
- [j18]Artem Lysenko, Matthew Morritt Hindle, Jan Taubert, Mansoor A. S. Saqi, Christopher J. Rawlings:
Data integration for plant genomics - exemplars from the integration of Arabidopsis thaliana databases. Briefings Bioinform. 11(2): 265 (2010) - [j17]Keywan Hassani-Pak, Roxane Legaie, Catherine Canevet, Hugo Antonius van den Berg, Jonathan D. Moore, Christopher J. Rawlings:
Enhancing Data Integration with Text Analysis to Find Proteins Implicated in Plant Stress Response. J. Integr. Bioinform. 7(3) (2010) - [c12]Catherine Canevet, Artem Lysenko, Andrea Splendiani, Matthew R. Pocock, Christopher J. Rawlings:
Analysis and Visualisation of RDF Resources in Ondex. SWAT4LS 2010 - [i1]Catherine Canevet, Artem Lysenko, Andrea Splendiani, Matthew R. Pocock, Christopher J. Rawlings:
Analysis and visualisation of RDF resources in Ondex. CoRR abs/1012.1661 (2010) - 2009
- [j16]Artem Lysenko, Matthew Morritt Hindle, Jan Taubert, Mansoor A. S. Saqi, Christopher J. Rawlings:
Data integration for plant genomics - exemplars from the integration of Arabidopsis thaliana databases. Briefings Bioinform. 10(6): 676-693 (2009) - [c11]Jan Taubert, Matthew Hindle, Artem Lysenko, Jochen Weile, Jacob Köhler, Christopher J. Rawlings:
Linking Life Sciences Data Using Graph-Based Mapping. DILS 2009: 16-30 - [c10]Catherine Canevet, Andrea Splendiani, Shao-Chih Kuo, Robert Stevens, Phillip W. Lord, Christopher J. Rawlings:
Ondex: data integration and visualisation for the Semantic Web. SWAT4LS 2009 - 2008
- [j15]Robert Pesch, Artem Lysenko, Matthew Hindle, Keywan Hassani-Pak, Ralf Thiele, Christopher J. Rawlings, Jacob Köhler, Jan Taubert:
Graph-based sequence annotation using a data integration approach. J. Integr. Bioinform. 5(2) (2008) - [j14]Rainer Winnenburg, Martin Urban, Andrew M. Beacham, Thomas K. Baldwin, Sabrina Holland, Magdalen Lindeberg, Hilde Hansen, Christopher J. Rawlings, Kim E. Hammond-Kosack, Jacob Köhler:
PHI-base update: additions to the pathogen-host interaction database. Nucleic Acids Res. 36(Database-Issue): 572-576 (2008) - [c9]Justin Ferris, Mike Surridge, Ellis Rowland Watkins, Thomas Fahringer, Radu Prodan, Frank Glinka, Sergei Gorlatch, Christoph Anthes, Alexis Arragon, Christopher J. Rawlings, Arton Lipaj:
Edutain@Grid: A Business Grid Infrastructure for Real-Time On-Line Interactive Applications. GECON 2008: 152-162 - 2007
- [j13]Jan Taubert, Klaus Peter Sieren, Matthew Hindle, Berend Hoekman, Rainer Winnenburg, Stephan Philippi, Christopher J. Rawlings, Jacob Köhler:
The OXL format for the exchange of integrated datasets. J. Integr. Bioinform. 4(3) (2007) - [j12]Rowan A. C. Mitchell, Nathalie Castells-Brooke, Jan Taubert, Paul Verrier, David J. Leader, Christopher J. Rawlings:
Wheat Estimated Transcript Server (WhETS): a tool to provide best estimate of hexaploid wheat transcript sequence. Nucleic Acids Res. 35(Web-Server-Issue): 148-151 (2007) - [c8]Thomas Fahringer, Christoph Anthes, Alexis Arragon, Arton Lipaj, Jens Müller-Iden, Christopher J. Rawlings, Radu Prodan, Mike Surridge:
The edutain@grid Project. GECON 2007: 182-187 - 2006
- [j11]Jacob Köhler, Jan Baumbach, Jan Taubert, Michael Specht, Andre Skusa, Alexander Rüegg, Christopher J. Rawlings, Paul Verrier, Stephan Philippi:
Graph-based analysis and visualization of experimental results with ONDEX. Bioinform. 22(11): 1383-1390 (2006) - [j10]Rainer Winnenburg, Thomas K. Baldwin, Martin Urban, Christopher J. Rawlings, Jacob Köhler, Kim E. Hammond-Kosack:
PHI-base: a new database for pathogen host interactions. Nucleic Acids Res. 34(Database-Issue): 459-464 (2006) - 2004
- [j9]Jacob Köhler, Christopher J. Rawlings, Paul Verrier, Rowan A. C. Mitchell, Andre Skusa, Alexander Rüegg, Stephan Philippi:
Linking experimental results, biological networks and sequence analysis methods using Ontologies and Generalized Data Structures. Silico Biol. 5(1): 33-44 (2004) - 2001
- [j6]Stephen H. Muggleton, Christopher H. Bryant, Ashwin Srinivasan, Alex Whittaker, Simon Topp, Christopher J. Rawlings:
Are Grammatical Representations Useful for Learning from Biological Sequence Data? - A Case Study. J. Comput. Biol. 8(5): 493-521 (2001) - 1995
- [e1]Christopher J. Rawlings, Dominic A. Clark, Russ B. Altman, Lawrence Hunter, Thomas Lengauer, Shoshana J. Wodak:
Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, Cambridge, United Kingdom, July 16-19, 1995. AAAI 1995, ISBN 0-929280-83-0 [contents] - 1994
- [j5]Dominic A. Clark, Christopher J. Rawlings:
Intelligent Systems for Molecular Biology: review of the first international conference [published erratum appears in Comput Appl Biosci 1994 10(3)]. Comput. Appl. Biosci. 10(2): 199-205 (1994) - [j4]John Fox, Christopher J. Rawlings:
Artificial intellugence and knowledge based systems in molecular biology. Knowl. Eng. Rev. 9(3): 287-300 (1994) - [c7]Dominic A. Clark, Christopher J. Rawlings, Jack Shirazi:
Applications of Parallel Constraint Logic Programming to Molecular Biology and Genetics. HPCN 1994: 236-237 - [c6]Dominic A. Clark, Christopher J. Rawlings, Sylvie Doursenot:
Genetic Map Construction with Constraints. ISMB 1994: 78-86 - 1993
- [j3]Dominic A. Clark, Christopher J. Rawlings, Jack Shirazi, Liang-Liang Li, Kees Schuerman, Mike Reeve, André Véron:
Solving Large Combinatorial Problems in Molecular Biology Using the ElipSys Parallel Constraint Logic Programming System. Comput. J. 36(8): 690-701 (1993) - [j2]Dominic A. Clark, Christopher J. Rawlings, Simon Parsons:
Current Research in Artificial Intelligence and Molecular Biology. Knowl. Eng. Rev. 8(4): 349-357 (1993) - [c5]Liang-Liang Li, Mike Reeve, Kees Schuerman, André Véron, Jacques Bellone, Claudine Pradelles, Zissis Palaskas, Takis Stamatopoulos, Dominic A. Clark, Sylvie Doursenot, Christopher J. Rawlings, Jack Shirazi, Giuseppe Sardu:
APPLAUSE: Applications Using the ElipSys Parallel CLP System. ICLP 1993: 847-848 - [c4]Dominic A. Clark, Christopher J. Rawlings, Jack Shirazi, André Véron, Mike Reeve:
Protein Topology Prediction through Parallel Constraint Logic Programming. ISMB 1993: 83-91 - [c3]Liang-Liang Li, Mike Reeve, Kees Schuerman, André Véron, Jacques Bellone, Claudine Pradelles, Angelos Kolokouris, Takis Stamatopoulos, Dominic A. Clark, Christopher J. Rawlings, Jack Shirazi, Giuseppe Sardu:
Applause: Application & Assessment of Parallel Programming Using Logic. PARLE 1993: 756-759 - 1986
- [c1]Christopher J. Rawlings, W. R. Taylor, J. Nyakairu, John Fox, Michael J. E. Sternberg:
Using Prolog to Represent and Reason about Protein Structure. ICLP 1986: 536-543
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