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Anália Lourenço
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2020 – today
- 2023
- [j40]Guillermo Blanco
, Anália Lourenço
:
A multilayered graph-based framework to explore behavioural phenomena in social media conversations. Int. J. Medical Informatics 179: 105236 (2023) - [j39]Rubén Yáñez Martínez
, Guillermo Blanco
, Anália Lourenço
:
Spanish Corpora of tweets about COVID-19 vaccination for automatic stance detection. Inf. Process. Manag. 60(3): 103294 (2023) - 2022
- [j38]Martín Pérez-Pérez
, Tânia Ferreira, Anália Lourenço
, Gilberto Igrejas
, Florentino Fdez-Riverola
:
Boosting biomedical document classification through the use of domain entity recognizers and semantic ontologies for document representation: The case of gluten bibliome. Neurocomputing 484: 223-237 (2022) - [j37]Guillermo Blanco
, Anália Lourenço
:
Optimism and pessimism analysis using deep learning on COVID-19 related twitter conversations. Inf. Process. Manag. 59(3): 102918 (2022) - 2021
- [j36]Martín Pérez-Pérez
, Gilberto Igrejas
, Florentino Fdez-Riverola
, Anália Lourenço
:
A framework to extract biomedical knowledge from gluten-related tweets: The case of dietary concerns in digital era. Artif. Intell. Medicine 118: 102131 (2021) - [j35]Beatriz T. Magalhães
, Anália Lourenço
, Nuno F. Azevedo
:
Computational resources and strategies to assess single-molecule dynamics of the translation process in S. cerevisiae. Briefings Bioinform. 22(1): 219-231 (2021) - [j34]Augusto Ramoa
, Jorge Condeço, Florentino Fdez-Riverola
, Anália Lourenço
:
HaemoKBS: A knowledge-based system for real-time, continuous categorisation of adverse reactions in blood recipients. Neurocomputing 423: 756-767 (2021) - [j33]Guillermo Blanco
, Borja Sánchez
, Lorena Ruiz
, Florentino Fdez-Riverola
, Abelardo Margolles
, Anália Lourenço
:
Computational Approach to the Systematic Prediction of Glycolytic Abilities: Looking Into Human Microbiota. IEEE ACM Trans. Comput. Biol. Bioinform. 18(6): 2302-2313 (2021) - 2020
- [j32]Guillermo Blanco
, Roi Pérez-López
, Florentino Fdez-Riverola
, Anália Lourenço
:
Understanding the social evolution of the Java community in Stack Overflow: A 10-year study of developer interactions. Future Gener. Comput. Syst. 105: 446-454 (2020) - [j31]Gael Pérez Rodríguez
, Martín Pérez-Pérez
, Florentino Fdez-Riverola
, Anália Lourenço
:
Mining the sociome for Health Informatics: Analysis of therapeutic lifestyle adherence of diabetic patients in Twitter. Future Gener. Comput. Syst. 110: 214-232 (2020) - [c28]Gael Pérez Rodríguez
, Beatriz T. Magalhães
, Nuno F. Azevedo
, Anália Lourenço
:
Application of Agent-Based Modelling to Simulate Ribosome Translation. PAAMS 2020: 200-211 - [c27]Martín Pérez-Pérez
, Anália Lourenço
, Gilberto Igrejas
, Florentino Fdez-Riverola
:
A Health-Related Study from Food Online Reviews. The Case of Gluten-Free Foods. PACBB 2020: 12-22 - [c26]Roi Pérez-López
, Guillermo Blanco
, Florentino Fdez-Riverola
, Anália Lourenço
:
The Activity of Bioinformatics Developers and Users in Stack Overflow. PACBB 2020: 23-31
2010 – 2019
- 2019
- [j30]Aitor Blanco-Míguez
, Florentino Fdez-Riverola
, Borja Sánchez, Anália Lourenço
:
Resources and tools for the high-throughput, multi-omic study of intestinal microbiota. Briefings Bioinform. 20(3): 1032-1056 (2019) - [j29]Hugo López-Fernández
, Aitor Blanco-Míguez
, Florentino Fdez-Riverola
, Borja Sánchez, Anália Lourenço
:
DEWE: A novel tool for executing differential expression RNA-Seq workflows in biomedical research. Comput. Biol. Medicine 107: 197-205 (2019) - [j28]Paulo Maia, Gael Pérez Rodríguez
, Martín Pérez-Pérez
, Florentino Fdez-Riverola
, Anália Lourenço
, Nuno F. Azevedo
:
Application of agent-based modelling to assess single-molecule transport across the cell envelope of E. coli. Comput. Biol. Medicine 107: 218-226 (2019) - [j27]Gael Pérez Rodríguez
, Martín Pérez-Pérez, Florentino Fdez-Riverola
, Anália Lourenço
:
Online visibility of software-related web sites: The case of biomedical text mining tools. Inf. Process. Manag. 56(3): 565-583 (2019) - [j26]Aitor Blanco-Míguez
, Guillermo Blanco
, Alberto Gutiérrez-Jácome, Florentino Fdez-Riverola
, Borja Sánchez, Anália Lourenço
:
Computational prediction of the bioactivity potential of proteomes based on expert knowledge. J. Biomed. Informatics 91 (2019) - [j25]Martín Pérez-Pérez
, Gael Pérez Rodríguez
, Aitor Blanco-Míguez
, Florentino Fdez-Riverola
, Alfonso Valencia
, Martin Krallinger
, Anália Lourenço
:
Next generation community assessment of biomedical entity recognition web servers: metrics, performance, interoperability aspects of BeCalm. J. Cheminformatics 11(1): 42:1-42:16 (2019) - 2017
- [j24]Aitor Blanco-Míguez
, Alberto Gutiérrez-Jácome, Florentino Fdez-Riverola
, Anália Lourenço
, Borja Sánchez:
MAHMI database: a comprehensive MetaHit-based resource for the study of the mechanism of action of the human microbiota. Database J. Biol. Databases Curation 2017: baw157 (2017) - [j23]Martín Pérez-Pérez
, Gael Pérez Rodríguez
, Florentino Fdez-Riverola
, Anália Lourenço
:
Collaborative relation annotation and quality analysis in Markyt environment. Database J. Biol. Databases Curation 2017: bax090 (2017) - [j22]Aitor Blanco-Míguez
, Florentino Fdez-Riverola
, Anália Lourenço
, Borja Sánchez:
P4P: a peptidome-based strain-level genome comparison web tool. Nucleic Acids Res. 45(Webserver-Issue): W265-W269 (2017) - [c25]Ander Intxaurrondo, Martín Pérez-Pérez, Gael Pérez Rodríguez, Jose Antonio López-Martín, Jesus Santamaría, Santiago de la Peña, Marta Villegas, Saber Ahmad Akhondi, Alfonso Valencia, Anália Lourenço, Martin Krallinger:
The Biomedical Abbreviation Recognition and Resolution (BARR) Track: Benchmarking, Evaluation and Importance of Abbreviation Recognition Systems Applied to Spanish Biomedical Abstracts. IberEval@SEPLN 2017: 230-246 - 2016
- [j21]Denise Gameiro, Martín Pérez-Pérez
, Gael Pérez Rodríguez
, Gonçalo Monteiro, Nuno F. Azevedo
, Anália Lourenço
:
Computational resources and strategies to construct single-molecule metabolic models of microbial cells. Briefings Bioinform. 17(5): 863-876 (2016) - [j20]Paula Jorge
, Martín Pérez-Pérez
, Gael Pérez Rodríguez
, Florentino Fdez-Riverola
, Maria Olívia Pereira
, Anália Lourenço
:
Construction of antimicrobial peptide-drug combination networks from scientific literature based on a semi-automated curation workflow. Database J. Biol. Databases Curation 2016 (2016) - [j19]Martín Pérez-Pérez
, Gael Pérez Rodríguez
, Obdulia Rabal
, Miguel Vazquez
, Julen Oyarzabal
, Florentino Fdez-Riverola
, Alfonso Valencia, Martin Krallinger
, Anália Lourenço
:
The Markyt visualisation, prediction and benchmark platform for chemical and gene entity recognition at BioCreative/CHEMDNER challenge. Database J. Biol. Databases Curation 2016 (2016) - [j18]Alberto G. Jácome, Florentino Fdez-Riverola
, Anália Lourenço
:
BIOMedical Search Engine Framework: Lightweight and customized implementation of domain-specific biomedical search engines. Comput. Methods Programs Biomed. 131: 63-77 (2016) - [j17]Aitor Blanco-Míguez
, Jan P. Meier-Kolthoff
, Alberto Gutiérrez-Jácome
, Markus Göker
, Florentino Fdez-Riverola
, Borja Sánchez, Anália Lourenço
:
Improving Phylogeny Reconstruction at the Strain Level Using Peptidome Datasets. PLoS Comput. Biol. 12(12) (2016) - 2015
- [j16]Nadine Castelhano Santos
, Maria Olívia Pereira
, Anália Lourenço
:
Pathogenicity phenomena in three model systems: from network mining to emerging system-level properties. Briefings Bioinform. 16(1): 169-182 (2015) - [j15]Martín Pérez-Pérez
, Daniel Glez-Peña
, Florentino Fdez-Riverola
, Anália Lourenço
:
Marky: A tool supporting annotation consistency in multi-user and iterative document annotation projects. Comput. Methods Programs Biomed. 118(2): 242-251 (2015) - [j14]Gael Pérez Rodríguez
, Daniel Glez-Peña
, Nuno F. Azevedo
, Maria Olívia Pereira
, Florentino Fdez-Riverola
, Anália Lourenço
:
Enabling systematic, harmonised and large-scale biofilms data computation: The Biofilms Experiment Workbench. Comput. Methods Programs Biomed. 118(3): 309-321 (2015) - [j13]Ana Margarida Sousa
, Maria Olívia Pereira
, Anália Lourenço
:
MorphoCol: An ontology-based knowledgebase for the characterisation of clinically significant bacterial colony morphologies. J. Biomed. Informatics 55: 55-63 (2015) - [c24]Alberto G. Jácome, Florentino Fdez-Riverola
, Anália Lourenço
:
A Novel Search Engine Supporting Specific Drug Queries and Literature Management. PACBB 2015: 99-106 - 2014
- [j12]Daniel Glez-Peña
, Anália Lourenço
, Hugo López-Fernández
, Miguel Reboiro-Jato
, Florentino Fdez-Riverola
:
Web scraping technologies in an API world. Briefings Bioinform. 15(5): 788-797 (2014) - [j11]Ana Margarida Sousa
, Maria Olívia Pereira
, Nuno F. Azevedo
, Anália Lourenço
:
An harmonised vocabulary for communicating and interchanging Biofilms experimental results. J. Integr. Bioinform. 11(3) (2014) - [c23]Ana Margarida Sousa
, Maria Olívia Pereira
, Nuno F. Azevedo
, Anália Lourenço
:
Designing an Ontology Tool for the Unification of Biofilms Data. PACBB 2014: 41-48 - [c22]Gael Pérez Rodríguez
, Daniel Glez-Peña
, Nuno F. Azevedo
, Maria Olívia Pereira
, Florentino Fdez-Riverola
, Anália Lourenço
:
BEW: Bioinformatics Workbench for Analysis of Biofilms Experimental Data. PACBB 2014: 49-56 - [c21]Paula Jorge
, Maria Olívia Pereira
, Anália Lourenço
:
Networking the Way towards Antimicrobial Combination Therapies. PACBB 2014: 201-206 - [c20]José Ferrnandes, Anália Lourenço
:
Bringing Named Entity Recognition on Drupal Content Management System. PACBB 2014: 261-268 - [c19]Martín Pérez-Pérez
, Daniel Glez-Peña
, Florentino Fdez-Riverola
, Anália Lourenço
:
Marky: A Lightweight Web Tracking Tool for Document Annotation. PACBB 2014: 269-276 - [i3]Artemy Kolchinsky, Anália Lourenço, Heng-Yi Wu, Lang Li, Luis M. Rocha:
Extraction of Pharmacokinetic Evidence of Drug-drug Interactions from the Literature. CoRR abs/1412.0744 (2014) - 2013
- [c18]Artemy Kolchinsky, Anália Lourenço, Lang Li, Luis M. Rocha:
Evaluation of Linear Classifiers on Articles Containing Pharmacokinetic Evidence of Drug-Drug Interactions. Pacific Symposium on Biocomputing 2013: 409-420 - [c17]Alberto Simões
, Anália Lourenço
, José João Almeida
:
Evaluating Web Site Structure Based on Navigation Profiles and Site Topology. WorldCIST 2013: 305-311 - 2012
- [j10]Lynette Hirschman, Gully A. P. C. Burns
, Martin Krallinger
, Cecilia N. Arighi
, K. Bretonnel Cohen, Alfonso Valencia, Cathy H. Wu
, Andrew Chatr-aryamontri, Karen G. Dowell, Eva Huala
, Anália Lourenço
, Robert S. Nash, Anne-Lise Veuthey, Thomas C. Wiegers, Andrew G. Winter:
Text mining for the biocuration workflow. Database J. Biol. Databases Curation 2012 (2012) - [j9]Anália Lourenço
, Michael D. Conover, Andrew Wong, Azadeh Nematzadeh, Fengxia Pan, Hagit Shatkay, Luis M. Rocha
:
Correction: A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature. BMC Bioinform. 13: 180 (2012) - [j8]Augusto Ramoa
, Salomé Maia, Anália Lourenço:
A Rational Framework for Production Decision Making in Blood Establishments. J. Integr. Bioinform. 9(3) (2012) - [j7]Ana Margarida Sousa
, Andreia Ferreira, Nuno F. Azevedo, Maria Olívia Pereira, Anália Lourenço:
Computational approaches to standard-compliant biofilm data for reliable analysis and integration. J. Integr. Bioinform. 9(3) (2012) - [c16]Anália Lourenço
, Andreia Ferreira, Maria Olívia Pereira
, Nuno F. Azevedo
:
A Systematic Approach to the Interrogation and Sharing of Standardised Biofilm Signatures. PACBB 2012: 113-120 - [c15]Augusto Ramoa
, Salomé Maia, Anália Lourenço
:
SAD_BaSe: A Blood Bank Data Analysis Software. PACBB 2012: 165-171 - [c14]Ana Margarida Sousa
, Anália Lourenço
, Maria Olívia Pereira
:
MorphoCol: A Powerful Tool for the Clinical Profiling of Pathogenic Bacteria. PACBB 2012: 181-188 - [i2]Artemy Kolchinsky, Anália Lourenço, Lang Li, Luis M. Rocha:
Evaluation of linear classifiers on articles containing pharmacokinetic evidence of drug-drug interactions. CoRR abs/1210.0734 (2012) - 2011
- [j6]Anália Lourenço
, Sónia Carneiro
, Miguel Rocha
, Eugénio C. Ferreira
, Isabel Rocha
:
Challenges in integrating Escherichia coli molecular biology data. Briefings Bioinform. 12(2): 91-103 (2011) - [j5]Rafael Carreira
, Sónia Carneiro
, Rui Pereira, Miguel Rocha
, Isabel Rocha
, Eugénio C. Ferreira
, Anália Lourenço
:
Semantic annotation of biological concepts interplaying microbial cellular responses. BMC Bioinform. 12: 460 (2011) - [j4]Anália Lourenço
, Michael D. Conover, Andrew Wong, Azadeh Nematzadeh, Fengxia Pan, Hagit Shatkay, Luis M. Rocha
:
A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature. BMC Bioinform. 12(S-8): S12 (2011) - [j3]Anália Lourenço
, Sónia Carneiro, José P. Pinto, Miguel Rocha, Eugénio C. Ferreira
, Isabel Rocha:
A Study of the Short and Long-term Regulation of E. coli Metabolic Pathways. J. Integr. Bioinform. 8(3) (2011) - [c13]Anália Lourenço
, Sónia Carneiro
, José P. Pinto, Miguel Rocha
, Eugénio C. Ferreira
, Isabel Rocha
:
Interpreting the Regulatory Interplay in E. coli Metabolic Pathways. PACBB 2011: 303-312 - [i1]Anália Lourenço, Michael D. Conover, Andrew Wong, Azadeh Nematzadeh, Fengxia Pan, Hagit Shatkay, Luis M. Rocha:
A Linear Classifier Based on Entity Recognition Tools and a Statistical Approach to Method Extraction in the Protein-Protein Interaction Literature. CoRR abs/1103.4090 (2011) - 2010
- [j2]Anália Lourenço
, Rafael Carreira
, Daniel Glez-Peña
, José Ramón Méndez
, Sónia Carneiro
, Luis Mateus Rocha
, Fernando Díaz
, Eugénio C. Ferreira
, Isabel Rocha
, Florentino Fdez-Riverola
, Miguel Rocha
:
BioDR: Semantic indexing networks for biomedical document retrieval. Expert Syst. Appl. 37(4): 3444-3453 (2010)
2000 – 2009
- 2009
- [j1]Anália Lourenço
, Rafael Carreira
, Sónia Carneiro
, Paulo Maia
, Daniel Glez-Peña
, Florentino Fdez-Riverola
, Eugénio C. Ferreira
, Isabel Rocha
, Miguel Rocha
:
@Note: A workbench for Biomedical Text Mining. J. Biomed. Informatics 42(4): 710-720 (2009) - [c12]Anália Lourenço
, Sónia Carneiro
, Eugénio C. Ferreira
, Rafael Carreira
, Luis M. Rocha
, Daniel Glez-Peña
, José Ramón Méndez
, Florentino Fdez-Riverola
, Fernando Díaz
, Isabel Rocha
, Miguel Rocha
:
Biomedical Text Mining Applied to Document Retrieval and Semantic Indexing. IWANN (2) 2009: 954-963 - 2008
- [c11]Anália Lourenço
, Rafael Carreira
, Sónia Carneiro
, Paulo Maia
, Daniel Glez-Peña
, Florentino Fdez-Riverola
, Eugénio C. Ferreira
, Isabel Rocha
, Miguel Rocha
:
A framework for the development of Biomedical Text Mining software tools. BIBE 2008: 1-6 - [c10]Rui Mendes
, Anália Lourenço
, Sónia Carneiro
, Miguel Rocha
, Isabel Rocha
, Eugénio C. Ferreira
:
A framework for the integrated analysis of metabolic and regulatory networks. BIBE 2008: 1-6 - [c9]José P. Pinto, Oscar Días
, Anália Lourenço
, Sónia Carneiro
, Eugénio C. Ferreira
, Isabel Rocha
, Miguel Rocha
:
Data Integration Issues in the Reconstruction of the Genome-Scale Metabolic Model of Zymomonas Mobillis. IWPACBB 2008: 92-101 - 2006
- [c8]Anália Lourenço
, Orlando Belo:
Applying Clickstream Data Mining to Real-Time Web Crawler Detection and Containment Using ClickTips Platform. GfKl 2006: 351-358 - [c7]Anália Lourenço
, Orlando Belo
:
Catching web crawlers in the act. ICWE 2006: 265-272 - 2004
- [c6]Anália Lourenço, Orlando Belo:
Attenuating the Effect of Data Abnormalities on Data Warehouses. ICEIS (1) 2004: 411-415 - 2003
- [c5]Anália Lourenço, Orlando Belo:
Assessing Web Usage Profiles. ICWI 2003: 809-812 - [c4]Anália Lourenço, Orlando Belo:
Utilização de Agentes na Identificação e Resolução de Situações Anómales em Processos de Povoamento de Data Warehouses. JISBD 2003: 695-704 - 2001
- [c3]Anália Lourenço
, Joaquim Gonçalves, Orlando Belo
:
Agent-Based Knowledge Extraction Services Inside Enterprise Data Warehousing Systems Environments. DEXA Workshop 2001: 887-891 - [c2]Joaquim Gonçalves, Anália Lourenço, Orlando Belo:
Specializing Agents on Data Integration in Data Warehousing System Environment. ICEIS (1) 2001: 19-23 - [c1]Jose Velez, Anália Lourenço, Cristina Pechirra, Leonor Almeida:
Broadband access technologies. Workshop on Universal Accessibility of Ubiquitous Computing 2001: 56-59
Coauthor Index
aka: Florentino Fdez-Riverola
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