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2020 – today
- 2024
[j13]Sumit Madan
, Lisa Kühnel, Holger Fröhlich, Martin Hofmann-Apitius, Juliane Fluck:
Dataset of miRNA-disease relations extracted from textual data using transformer-based neural networks. Database J. Biol. Databases Curation 2024 (2024)- [j12]Sumit Madan, Manuel Lentzen, Johannes Brandt, Daniel Rueckert, Martin Hofmann-Apitius, Holger Fröhlich:
Transformer models in biomedicine. BMC Medical Informatics Decis. Mak. 24(1): 214 (2024) - 2023
- [j11]Manuel Lentzen, Thomas Linden, Sai Veeranki, Sumit Madan, Diether Kramer, Werner Leodolter, Holger Fröhlich:
A Transformer-Based Model Trained on Large Scale Claims Data for Prediction of Severe COVID-19 Disease Progression. IEEE J. Biomed. Health Informatics 27(9): 4548-4558 (2023) - 2022
- [j10]Sumit Madan, Fabian Julius Zimmer, Helena Balabin, Sebastian Schaaf, Holger Fröhlich, Juliane Fluck, Irene Neuner, Klaus Mathiak, Martin Hofmann-Apitius, Pegah Sarkheil:
Deep Learning-based detection of psychiatric attributes from German mental health records. Int. J. Medical Informatics 161: 104724 (2022) - [j9]Sumit Madan, Victoria Demina, Marcus Stapf, Oliver Ernst, Holger Fröhlich:
Accurate prediction of virus-host protein-protein interactions via a Siamese neural network using deep protein sequence embeddings. Patterns 3(9): 100551 (2022) - 2021
- [j8]Astghik Sargsyan, Alpha Tom Kodamullil, Shounak Baksi, Johannes Darms, Sumit Madan, Stephan Gebel, Oliver Keminer, Geena Mariya Jose, Helena Balabin, Lauren Nicole Delong, Manfred Kohler, Marc Jacobs, Martin Hofmann-Apitius:
The COVID-19 Ontology. Bioinform. 36(24): 5703-5705 (2021) - [c7]Lisa Langnickel, Roman Baum, Johannes Darms, Sumit Madan, Juliane Fluck:
COVID-19 preVIEW: Semantic Search to Explore COVID-19 Research Preprints. MIE 2021: 78-82 - 2020
- [j7]Raza-Ur Rahman, Anna-Maria Liebhoff, Vikas Bansal, Maksims Fiosins, Ashish Rajput, Abdul Sattar, Daniel Sumner Magruder, Sumit Madan, Ting Sun, Abhivyakti Gautam, Sven Heins, Timur Liwinski, Jörn Bethune, Claudia Trenkwalder, Juliane Fluck, Brit Mollenhauer, Stefan Bonn:
SEAweb: the small RNA Expression Atlas web application. Nucleic Acids Res. 48(Database-Issue): D204-D219 (2020) - [c6]Asiyah Yu Lin, Stephan Gebel, Qingliang Leon Li, Sumit Madan, Johannes Darms, Evan Bolton, Barry Smith, Martin Hofmann-Apitius, Yongqun Oliver He, Alpha Tom Kodamullil:
CTO: A Community-Based Clinical Trial Ontology and Its Applications in PubChemRDF and SCAIView. ICBO/ODLS 2020: 1-12 - [c5]Sara Mora, Sumit Madan, Stephan Gebel, Mauro Giacomini:
Proposal of an Architecture for Terminology Management in a Research Project. MIE 2020: 1371-1372
2010 – 2019
- 2019
- [j6]Sumit Madan, Justyna Szostak, Ravikumar Komandur Elayavilli, Richard Tzong-Han Tsai, Mehdi Ali, Longhua Qian, Majid Rastegar-Mojarad, Julia Hoeng, Juliane Fluck:
The extraction of complex relationships and their conversion to biological expression language (BEL) overview of the BioCreative VI (2017) BEL track. Database J. Biol. Databases Curation 2019: baz084 (2019) - 2018
- [c4]Jens Dörpinghaus, Jürgen Klein, Johannes Darms, Sumit Madan, Marc Jacobs:
SCAIView - A Semantic Search Engine for Biomedical Research Utilizing a Microservice Architecture. SEMANTiCS (Posters & Demos) 2018 - [c3]Sumit Madan, Maksims Fiosins, Stefan Bonn, Juliane Fluck:
A semantic data integration methodology for translational neurodegenerative disease research. SWAT4LS 2018 - 2016
- [j5]Juliane Fluck, Sumit Madan, Sam Ansari, Alpha Tom Kodamullil, Reagon Karki, Majid Rastegar-Mojarad, Natalie L. Catlett, William Hayes, Justyna Szostak, Julia Hoeng, Manuel C. Peitsch:
Training and evaluation corpora for the extraction of causal relationships encoded in biological expression language (BEL). Database J. Biol. Databases Curation 2016 (2016) - [j4]Sumit Madan, Sven Hodapp, Philipp Senger, Sam Ansari, Justyna Szostak, Julia Hoeng, Manuel C. Peitsch, Juliane Fluck:
The BEL information extraction workflow (BELIEF): evaluation in the BioCreative V BEL and IAT track. Database J. Biol. Databases Curation 2016 (2016) - [j3]Fabio Rinaldi, Tilia Renate Ellendorff, Sumit Madan, Simon Clematide, Adrian Van der Lek, Heinz-Theodor Mevissen, Juliane Fluck:
BioCreative V track 4: a shared task for the extraction of causal network information using the Biological Expression Language. Database J. Biol. Databases Curation 2016 (2016) - [j2]Qinghua Wang, Shabbir Syed-Abdul, Lara Almeida, Sophia Ananiadou, Yalbi I. Balderas-Martínez, Riza Batista-Navarro, David Campos, Lucy Chilton, Hui-Jou Chou, Gabriela Contreras, Laurel Cooper, Hong-Jie Dai, Barbra Ferrell, Juliane Fluck, Socorro Gama-Castro, Nancy George, Georgios V. Gkoutos, Afroza Khanam Irin, Lars Juhl Jensen, Silvia Jimenez, Toni Rose Jue, Ingrid M. Keseler, Sumit Madan, Sérgio Matos, Peter McQuilton, Marija Milacic, Matthew E. Mort, Jeyakumar Natarajan, Evangelos Pafilis, Emiliano Pereira, Shruti Rao, Fabio Rinaldi, Karen Rothfels, David Salgado, Raquel M. Silva, Onkar Singh, Raymund Stefancsik, Chu-Hsien Su, Suresh Subramani, Hamsa D. Tadepally, Loukia Tsaprouni, Nicole A. Vasilevsky, Xiaodong Wang, Andrew Chatr-aryamontri, Stanley J. F. Laulederkind, Sherri Matis-Mitchell, Johanna R. McEntyre, Sandra E. Orchard, Sangya Pundir, Raul Rodriguez-Esteban, Kimberly Van Auken, Zhiyong Lu, Mary L. Schaeffer, Cathy H. Wu, Lynette Hirschman, Cecilia N. Arighi:
Overview of the interactive task in BioCreative V. Database J. Biol. Databases Curation 2016 (2016) - 2015
- [j1]Justyna Szostak, Sam Ansari, Sumit Madan, Juliane Fluck, Marja Talikka, Anita Iskandar, Hector De Leon, Martin Hofmann-Apitius, Manuel C. Peitsch, Julia Hoeng:
Construction of biological networks from unstructured information based on a semi-automated curation workflow. Database J. Biol. Databases Curation 2015 (2015) - 2013
- [c2]Juliane Fluck, Alexander Klenner, Sumit Madan, Sam Ansari, Tamara Bobic, Julia Hoeng, Martin Hofmann-Apitius, Manuel C. Peitsch:
BEL Networks Derived from Qualitative Translations of BioNLP Shared Task Annotations. BioNLP@ACL 2013: 80-88 - 2012
- [c1]Roman Klinger, Philipp Senger, Sumit Madan, Michal Jacovi:
Online Communities Support Policy-Making: The Need for Data Analysis. ePart 2012: 132-143
Coauthor Index
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