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Publication search results
found 142 matches
- 2013
- Stuart Aitken, Ozgur E. Akman:
Nested sampling for parameter inference in systems biology: application to an exemplar circadian model. BMC Syst. Biol. 7: 72 (2013) - Flavio Amara, Riccardo Colombo, Paolo Cazzaniga, Dario Pescini, Attila Csikász-Nagy, Marco Falconi, Daniela Besozzi, Paolo Plevani:
In vivo and in silico analysis of PCNA ubiquitylation in the activation of the Post Replication Repair pathway in S. cerevisiae. BMC Syst. Biol. 7: 24 (2013) - Asfar S. Azmi, Aliccia Bollig-Fischer, Bin Bao, Bum-Joon Park, Sun-Hye Lee, Gyu Yong-Song, Gregory Dyson, Chandan K. Reddy, Fazlul H. Sarkar, Ramzi M. Mohammad:
Systems analysis reveals a transcriptional reversal of the mesenchymal phenotype induced by SNAIL-inhibitor GN-25. BMC Syst. Biol. 7: 85 (2013) - Walter de Back, Roland Zimm, Lutz Brusch:
Transdifferentiation of pancreatic cells by loss of contact-mediated signaling. BMC Syst. Biol. 7: 77 (2013) - Taejeong Bae, Kyoohyoung Rho, Jin Woo Choi, Katsuhisa Horimoto, Wan Kyu Kim, Sunghoon Kim:
Identification of upstream regulators for prognostic expression signature genes in colorectal cancer. BMC Syst. Biol. 7: 86 (2013) - Matthieu Barba, Raphaël Dutoit, Christianne Legrain, Bernard Labedan:
Identifying reaction modules in metabolic pathways: bioinformatic deduction and experimental validation of a new putative route in purine catabolism. BMC Syst. Biol. 7: 99 (2013) - David J. Baumler, Bing Ma, Jennifer L. Reed, Nicole T. Perna:
Inferring ancient metabolism using ancestral core metabolic models of enterobacteria. BMC Syst. Biol. 7: 46 (2013) - Anna Bershteyn, Philip A. Eckhoff:
A model of HIV drug resistance driven by heterogeneities in host immunity and adherence patterns. BMC Syst. Biol. 7: 11 (2013) - Kazuhiko Bessho, Kumar Shanmukhappa, Rachel Sheridan, Pranavkumar Shivakumar, Reena Mourya, Stephanie Walters, Vivek Kaimal, Eric Dilbone, Anil G. Jegga, Jorge A. Bezerra:
Integrative genomics identifies candidate microRNAs for pathogenesis of experimental biliary atresia. BMC Syst. Biol. 7: 104 (2013) - Michael Bockmayr, Frederick Klauschen, Balazs Györffy, Carsten Denkert, Jan Budczies:
New network topology approaches reveal differential correlation patterns in breast cancer. BMC Syst. Biol. 7: 78 (2013) - Marta N. Bogdal, Beata Hat, Marek Kochanczyk, Tomasz Lipniacki:
Levels of pro-apoptotic regulator Bad and anti-apoptotic regulator Bcl-xL determine the type of the apoptotic logic gate. BMC Syst. Biol. 7: 67 (2013) - Eric Bonnet, Laurence Calzone, Daniel Rovera, Gautier Stoll, Emmanuel Barillot, Andrei Yu. Zinovyev:
BiNoM 2.0, a Cytoscape plugin for accessing and analyzing pathways using standard systems biology formats. BMC Syst. Biol. 7: 18 (2013) - Sven E. F. Borgos, Sergio Bordel, Håvard Sletta, Helga Ertesvåg, Øyvind M. Jakobsen, Per Bruheim, Trond E. Ellingsen, Jens Nielsen, Svein Valla:
Mapping global effects of the anti-sigma factor MucA in Pseudomonas fluorescens SBW25 through genome-scale metabolic modeling. BMC Syst. Biol. 7: 19 (2013) - Anat Bren, Yuval Hart, Erez Dekel, Daniel Koster, Uri Alon:
The last generation of bacterial growth in limiting nutrient. BMC Syst. Biol. 7: 27 (2013) - William A. Bryant, Michael J. E. Sternberg, John W. Pinney:
AMBIENT: Active Modules for Bipartite Networks - using high-throughput transcriptomic data to dissect metabolic response. BMC Syst. Biol. 7: 26 (2013) - Finja Büchel, Nicolas Rodriguez, Neil Swainston, Clemens Wrzodek, Tobias Czauderna, Roland Keller, Florian Mittag, Michael Schubert, Mihai Glont, Martin Golebiewski, Martijn P. van Iersel, Sarah M. Keating, Matthias Rall, Michael Wybrow, Henning Hermjakob, Michael Hucka, Douglas B. Kell, Wolfgang Müller, Pedro Mendes, Andreas Zell, Claudine Chaouiya, Julio Saez-Rodriguez, Falk Schreiber, Camille Laibe, Andreas Dräger, Nicolas Le Novère:
Path2Models: large-scale generation of computational models from biochemical pathway maps. BMC Syst. Biol. 7: 116 (2013) - Javier Carrera, Alfonso Jaramillo:
Automated design of bacterial genome sequences. BMC Syst. Biol. 7: 108 (2013) - Roger L. Chang, Lei Xie, Philip E. Bourne, Bernhard O. Palsson:
Antibacterial mechanisms identified through structural systems pharmacology. BMC Syst. Biol. 7: 102 (2013) - Claudine Chaouiya, Duncan Bérenguier, Sarah M. Keating, Aurélien Naldi, Martijn P. van Iersel, Nicolas Rodriguez, Andreas Dräger, Finja Büchel, Thomas Cokelaer, Bryan M. Kowal, Benjamin Wicks, Emanuel J. V. Gonçalves, Julien Dorier, Michel Page, Pedro T. Monteiro, Axel von Kamp, Ioannis Xenarios, Hidde de Jong, Michael Hucka, Steffen Klamt, Denis Thieffry, Nicolas Le Novère, Julio Saez-Rodriguez, Tomás Helikar:
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools. BMC Syst. Biol. 7: 135 (2013) - Chao Cheng, Yao Fu, Linsheng Shen, Mark Gerstein:
Identification of yeast cell cycle regulated genes based on genomic features. BMC Syst. Biol. 7: 70 (2013) - Hyunju Cho, Ming Wu, Linxia Zhang, Ryan Thompson, Aritro Nath, Christina Chan:
Signaling dynamics of palmitate-induced ER stress responses mediated by ATF4 in HepG2 cells. BMC Syst. Biol. 7: 9 (2013) - Sarp A. Coskun, A. Ercüment Çiçek, Nicola Lai, Ranjan K. Dash, Z. Meral Özsoyoglu, Gultekin Özsoyoglu:
An online model composition tool for system biology models. BMC Syst. Biol. 7: 88 (2013) - Isaac Crespo, Thanneer M. Perumal, Wiktor Jurkowski, Antonio del Sol:
Detecting cellular reprogramming determinants by differential stability analysis of gene regulatory networks. BMC Syst. Biol. 7: 140 (2013) - Oleg O. Demin, Sergey V. Smirnov, Victor V. Sokolov, Lourdes Cucurull-Sanchez, César Pichardo-Almarza, M. Victoria Flores, Neil Benson, Oleg V. Demin:
Modeling of celiac disease immune response and the therapeutic effect of potential drugs. BMC Syst. Biol. 7: 56 (2013) - Jennifer E. Dent, Christine Nardini:
From desk to bed: Computational simulations provide indication for rheumatoid arthritis clinical trials. BMC Syst. Biol. 7: 10 (2013) - Ali Ebrahim, Joshua A. Lerman, Bernhard Ø. Palsson, Daniel R. Hyduke:
COBRApy: COnstraints-Based Reconstruction and Analysis for Python. BMC Syst. Biol. 7: 74 (2013) - Kamil Erguler, Myrtani Pieri, Constantinos Deltas:
A mathematical model of the unfolded protein stress response reveals the decision mechanism for recovery, adaptation and apoptosis. BMC Syst. Biol. 7: 16 (2013) - Dávid Fazekas, Mihály Koltai, Dénes Türei, Dezsö Módos, Máté Pálfy, Zoltán Dúl, Lilian Zsákai, Máté Szalay-Beko, Katalin Lenti, Illés J. Farkas, Tibor Vellai, Peter Csermely, Tamás Korcsmáros:
SignaLink 2 - a signaling pathway resource with multi-layered regulatory networks. BMC Syst. Biol. 7: 7 (2013) - F. Alex Feltus, Stephen P. Ficklin, Scott M. Gibson, Melissa C. Smith:
Maximizing capture of gene co-expression relationships through pre-clustering of input expression samples: an Arabidopsis case study. BMC Syst. Biol. 7: 44 (2013) - Max Flöttmann, Falko Krause, Edda Klipp, Marcus Krantz:
Reaction-contingency based bipartite Boolean modelling. BMC Syst. Biol. 7: 58 (2013)
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