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Emanuel J. V. Gonçalves
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2020 – today
- 2021
- [j9]Lisa Dwane, Fiona M. Behan, Emanuel J. V. Gonçalves
, Howard Lightfoot
, Wanjuan Yang, Dieudonne van der Meer, Rebecca Shepherd, Miguel Pignatelli, Francesco Iorio
, Mathew Garnett
:
Project Score database: a resource for investigating cancer cell dependencies and prioritizing therapeutic targets. Nucleic Acids Res. 49(Database-Issue): D1365-D1372 (2021)
2010 – 2019
- 2017
- [j8]Claudia Hernandez-Armenta
, David Ochoa
, Emanuel J. V. Gonçalves
, Julio Saez-Rodriguez
, Pedro Beltrão
:
Benchmarking substrate-based kinase activity inference using phosphoproteomic data. Bioinform. 33(12): 1845-1851 (2017) - [j7]Emanuel J. V. Gonçalves
, Zrinka Raguz Nakic, Mattia Zampieri
, Omar Wagih
, David Ochoa
, Uwe Sauer, Pedro Beltrão
, Julio Saez-Rodriguez
:
Systematic Analysis of Transcriptional and Post-transcriptional Regulation of Metabolism in Yeast. PLoS Comput. Biol. 13(1) (2017) - 2014
- [j6]Anke Ryll, Joachim Bucher, Anne Bonin, Sophia Bongard, Emanuel J. V. Gonçalves
, Julio Saez-Rodriguez
, Jens Niklas, Steffen Klamt
:
A model integration approach linking signalling and gene-regulatory logic with kinetic metabolic models. Biosyst. 124: 26-38 (2014) - 2013
- [j5]Clare Pacini, Francesco Iorio
, Emanuel J. V. Gonçalves
, Murat Iskar
, Thomas Klabunde, Peer Bork
, Julio Saez-Rodriguez
:
DvD: An R/Cytoscape pipeline for drug repurposing using public repositories of gene expression data. Bioinform. 29(1): 132-134 (2013) - [j4]Emanuel J. V. Gonçalves
, Martijn P. van Iersel
, Julio Saez-Rodriguez
:
CySBGN: A Cytoscape plug-in to integrate SBGN maps. BMC Bioinform. 14: 17 (2013) - [j3]Claudine Chaouiya
, Duncan Bérenguier, Sarah M. Keating
, Aurélien Naldi
, Martijn P. van Iersel
, Nicolas Rodriguez
, Andreas Dräger
, Finja Büchel
, Thomas Cokelaer
, Bryan M. Kowal, Benjamin Wicks, Emanuel J. V. Gonçalves
, Julien Dorier
, Michel Page, Pedro T. Monteiro
, Axel von Kamp, Ioannis Xenarios, Hidde de Jong
, Michael Hucka
, Steffen Klamt
, Denis Thieffry
, Nicolas Le Novère, Julio Saez-Rodriguez
, Tomás Helikar
:
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools. BMC Syst. Biol. 7: 135 (2013) - [i1]Emanuel J. V. Gonçalves
, Julio Saez-Rodriguez
:
Cyrface: An interface from Cytoscape to R that provides a user interface to R packages. F1000Research 2: 192 (2013) - 2012
- [j2]Camille Terfve
, Thomas Cokelaer
, David Henriques
, Aidan MacNamara
, Emanuel J. V. Gonçalves
, Melody K. Morris, Martijn P. van Iersel
, Douglas A. Lauffenburger, Julio Saez-Rodriguez
:
CellNOptR: a flexible toolkit to train protein signaling networks to data using multiple logic formalisms. BMC Syst. Biol. 6: 133 (2012) - [j1]Emanuel J. V. Gonçalves
, Rui Pereira, Isabel Rocha
, Miguel Rocha
:
Optimization Approaches for the In Silico Discovery of Optimal Targets for Gene Over/Underexpression. J. Comput. Biol. 19(2): 102-114 (2012) - [c2]Emanuel J. V. Gonçalves
, Isabel Rocha
, Miguel Rocha
:
Computational Tools for Strain Optimization by Tuning the Optimal Level of Gene Expression. PACBB 2012: 251-258 - 2011
- [c1]Pedro Evangelista, Jorge Henrique Martins de Pinho, Emanuel J. V. Gonçalves
, Paulo Maia
, João Luís Ferreira Sobral
, Miguel Francisco de Almeida Pereira da Rocha
:
A Software Platform for Evolutionary Computation with Pluggable Parallelism and Quality Assurance. EANN/AIAI (2) 2011: 45-50
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last updated on 2024-04-24 23:21 CEST by the dblp team
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