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Holger Roth
Holger R. Roth
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2020 – today
- 2024
- [j30]Chen Shen, Holger R. Roth, Yuichiro Hayashi, Masahiro Oda, Gen Sato, Tadaaki Miyamoto, Daniel Rueckert, Kensaku Mori:
Anatomical attention can help to segment the dilated pancreatic duct in abdominal CT. Int. J. Comput. Assist. Radiol. Surg. 19(4): 655-664 (2024) - [j29]Chih-Hung Wang, Tzu-Ching Lin, Guanru Chen, Meng-Rui Lee, Joyce Tay, Cheng-Yi Wu, Meng-Che Wu, Holger R. Roth, Dong Yang, Can Zhao, Weichung Wang, Chien-Hua Huang:
Deep Learning-based Diagnosis and Localization of Pneumothorax on Portable Supine Chest X-ray in Intensive and Emergency Medicine: A Retrospective Study. J. Medical Syst. 48(1): 1 (2024) - [j28]Kendall Schmidt, Benjamin Bearce, Ken Chang, Laura Coombs, Keyvan Farahani, Marawan Elbatel, Kaouther Mouheb, Robert Marti, Ruipeng Zhang, Ya Zhang, Yanfeng Wang, Yaojun Hu, Haochao Ying, Yuyang Xu, Conrad Testagrose, Mutlu Demirer, Vikash Gupta, Ünal Akünal, Markus Bujotzek, Klaus H. Maier-Hein, Yi Qin, Xiaomeng Li, Jayashree Kalpathy-Cramer, Holger R. Roth:
Fair evaluation of federated learning algorithms for automated breast density classification: The results of the 2022 ACR-NCI-NVIDIA federated learning challenge. Medical Image Anal. 95: 103206 (2024) - [j27]Andres Diaz-Pinto, Sachidanand Alle, Vishwesh Nath, Yucheng Tang, Alvin Ihsani, Muhammad Asad, Fernando Pérez-García, Pritesh Mehta, Wenqi Li, Mona Flores, Holger R. Roth, Tom Vercauteren, Daguang Xu, Prerna Dogra, Sébastien Ourselin, Andrew Feng, M. Jorge Cardoso:
MONAI Label: A framework for AI-assisted interactive labeling of 3D medical images. Medical Image Anal. 95: 103207 (2024) - [j26]Inken Hagestedt, Ian Hales, Eric Boernert, Holger R. Roth, Michael A. Hoeh, Robin Roehm, Ellie Dobson, José Tomás Prieto:
Toward a tipping point in federated learning in healthcare and life sciences. Patterns 5(11): 101077 (2024) - [c103]Jingwei Sun, Ziyue Xu, Hongxu Yin, Dong Yang, Daguang Xu, Yudong Liu, Zhixu Du, Yiran Chen, Holger R. Roth:
FedBPT: Efficient Federated Black-box Prompt Tuning for Large Language Models. ICML 2024 - [c102]Pooneh Roshanitabrizi, Vishwesh Nath, Kelsey Brown, Alison Tompsett, Joselyn Rwebembera, Emmy Okello, Andrea Z. Beaton, Holger R. Roth, Craig A. Sable, Marius George Linguraru:
Uncertainty-Driven Rheumatic Heart Disease Detection through Active Learning. ISBI 2024: 1-5 - [c101]Hareem Nisar, Syed Muhammad Anwar, Zhifan Jiang, Abhijeet Parida, Ramon Sánchez-Jacob, Vishwesh Nath, Holger R. Roth, Marius George Linguraru:
D-Rax: Domain-Specific Radiologic Assistant Leveraging Multi-modal Data and eXpert Model Predictions. MedAGI@MICCAI 2024: 91-102 - [c100]Austin Tapp, Can Zhao, Holger R. Roth, Jeffrey Tanedo, Syed Muhammad Anwar, Niall J. Bourke, Joseph V. Hajnal, Victoria Nankabirwa, Sean C. L. Deoni, Natasha Leporé, Marius George Linguraru:
Super-Field MRI Synthesis for Infant Brains Enhanced by Dual Channel Latent Diffusion. MICCAI (3) 2024: 444-454 - [c99]Abhijeet Parida, Antònia Alomar, Zhifan Jiang, Pooneh Roshanitabrizi, Austin Tapp, María J. Ledesma-Carbayo, Ziyue Xu, Syed Muhammed Anwar, Marius George Linguraru, Holger R. Roth:
Data Alchemy: Mitigating Cross-Site Model Variability Through Test Time Data Calibration. MLMI@MICCAI (2) 2024: 148-158 - [c98]Xiaosong Wang, Ziyue Xu, Dong Yang, Leo K. Tam, Holger Roth, Daguang Xu:
Learning Quality Labels for Robust Image Classification. WACV 2024: 1092-1101 - [c97]Mohammad Zalbagi Darestani, Vishwesh Nath, Wenqi Li, Yufan He, Holger R. Roth, Ziyue Xu, Daguang Xu, Reinhard Heckel, Can Zhao:
IR-FRestormer: Iterative Refinement with Fourier-Based Restormer for Accelerated MRI Reconstruction. WACV 2024: 7640-7649 - [i85]Holger R. Roth, Ziyue Xu, Yuan-Ting Hsieh, Adithya Renduchintala, Isaac Yang, Zhihong Zhang, Yuhong Wen, Sean Yang, Kevin Lu, Kristopher Kersten, Camir Ricketts, Daguang Xu, Chester Chen, Yan Cheng, Andrew Feng:
Empowering Federated Learning for Massive Models with NVIDIA FLARE. CoRR abs/2402.07792 (2024) - [i84]Joshua C. Zhao, Saurabh Bagchi, Salman Avestimehr, Kevin S. Chan, Somali Chaterji, Dimitris Dimitriadis, Jiacheng Li, Ninghui Li, Arash Nourian, Holger R. Roth:
Federated Learning Privacy: Attacks, Defenses, Applications, and Policy Landscape - A Survey. CoRR abs/2405.03636 (2024) - [i83]Kendall Schmidt, Ben Bearce, Ken Chang, Laura Coombs, Keyvan Farahani, Marawan Elbatel, Kaouther Mouheb, Robert Marti, Ruipeng Zhang, Yao Zhang, Yanfeng Wang, Yaojun Hu, Haochao Ying, Yuyang Xu, Conrad Testagrose, Mutlu Demirer, Vikash Gupta, Ünal Akünal, Markus Bujotzek, Klaus H. Maier-Hein, Yi Qin, Xiaomeng Li, Jayashree Kalpathy-Cramer, Holger R. Roth:
Fair Evaluation of Federated Learning Algorithms for Automated Breast Density Classification: The Results of the 2022 ACR-NCI-NVIDIA Federated Learning Challenge. CoRR abs/2405.14900 (2024) - [i82]Holger R. Roth, Daniel J. Beutel, Yan Cheng, Javier Fernández-Marqués, Heng Pan, Chester Chen, Zhihong Zhang, Yuhong Wen, Sean Yang, Isaac Yang, Yuan-Ting Hsieh, Ziyue Xu, Daguang Xu, Nicholas D. Lane, Andrew Feng:
Supercharging Federated Learning with Flower and NVIDIA FLARE. CoRR abs/2407.00031 (2024) - [i81]Hareem Nisar, Syed Muhammad Anwar, Zhifan Jiang, Abhijeet Parida, Vishwesh Nath, Holger R. Roth, Marius George Linguraru:
D-Rax: Domain-specific Radiologic assistant leveraging multi-modal data and eXpert model predictions. CoRR abs/2407.02604 (2024) - [i80]Yucheng Tang, Yufan He, Vishwesh Nath, Pengfei Guo, Ruining Deng, Tianyuan Yao, Quan Liu, Can Cui, Mengmeng Yin, Ziyue Xu, Holger Roth, Daguang Xu, Haichun Yang, Yuankai Huo:
HoloHisto: End-to-end Gigapixel WSI Segmentation with 4K Resolution Sequential Tokenization. CoRR abs/2407.03307 (2024) - [i79]Abhijeet Parida, Antònia Alomar, Zhifan Jiang, Pooneh Roshanitabrizi, Austin Tapp, María J. Ledesma-Carbayo, Ziyue Xu, Syed Muhammed Anwar, Marius George Linguraru, Holger R. Roth:
Data Alchemy: Mitigating Cross-Site Model Variability Through Test Time Data Calibration. CoRR abs/2407.13632 (2024) - 2023
- [j25]Holger R. Roth, Yan Cheng, Yuhong Wen, Isaac Yang, Ziyue Xu, Yuan-Ting Hsieh, Kristopher Kersten, Ahmed Harouni, Can Zhao, Kevin Lu, Zhihong Zhang, Wenqi Li, Andriy Myronenko, Dong Yang, Sean Yang, Nicola Rieke, Abood Quraini, Chester Chen, Daguang Xu, Nic Ma, Prerna Dogra, Mona Flores, Andrew Feng:
NVIDIA FLARE: Federated Learning from Simulation to Real-World. IEEE Data Eng. Bull. 46(1): 170-184 (2023) - [j24]Malhar Patel, Ittai Dayan, Elliot K. Fishman, Mona Flores, Fiona J. Gilbert, Michal Guindy, Eugene J. Koay, Michael Rosenthal, Holger R. Roth, Marius George Linguraru:
Accelerating artificial intelligence: How federated learning can protect privacy, facilitate collaboration, and improve outcomes. Health Informatics J. 29(4) (2023) - [j23]Holger R. Roth, Nicola Rieke, Shadi Albarqouni, Quanzheng Li:
Guest Editorial Special Issue on Federated Learning for Medical Imaging: Enabling Collaborative Development of Robust AI Models. IEEE Trans. Medical Imaging 42(7): 1914-1919 (2023) - [j22]Ali Hatamizadeh, Hongxu Yin, Pavlo Molchanov, Andriy Myronenko, Wenqi Li, Prerna Dogra, Andrew Feng, Mona G. Flores, Jan Kautz, Daguang Xu, Holger R. Roth:
Do Gradient Inversion Attacks Make Federated Learning Unsafe? IEEE Trans. Medical Imaging 42(7): 2044-2056 (2023) - [c96]Meirui Jiang, Holger R. Roth, Wenqi Li, Dong Yang, Can Zhao, Vishwesh Nath, Daguang Xu, Qi Dou, Ziyue Xu:
Fair Federated Medical Image Segmentation via Client Contribution Estimation. CVPR 2023: 16302-16311 - [c95]Zhifan Jiang, Abhijeet Parida, Syed Muhammad Anwar, Yucheng Tang, Holger R. Roth, Michael J. Fisher, Roger J. Packer, Robert A. Avery, Marius George Linguraru:
Automatic Visual Acuity Loss Prediction in Children with Optic Pathway Gliomas using Magnetic Resonance Imaging. EMBC 2023: 1-5 - [c94]Jingwei Sun, Ziyue Xu, Dong Yang, Vishwesh Nath, Wenqi Li, Can Zhao, Daguang Xu, Yiran Chen, Holger R. Roth:
Communication-Efficient Vertical Federated Learning with Limited Overlapping Samples. ICCV 2023: 5180-5189 - [c93]Xinyang Liu, Erin R. Bonner, Zhifan Jiang, Holger R. Roth, Syed Muhammad Anwar, Roger J. Packer, Miriam Bornhorst, Marius George Linguraru:
Automatic Segmentation of Rare Pediatric Brain Tumors Using Knowledge Transfer From Adult Data. ISBI 2023: 1-4 - [c92]Xinyang Liu, Erin R. Bonner, Zhifan Jiang, Holger R. Roth, Roger J. Packer, Miriam Bornhorst, Marius George Linguraru:
From adult to pediatric: deep learning-based automatic segmentation of rare pediatric brain tumors. Computer-Aided Diagnosis 2023 - [c91]Pochuan Wang, Chen Shen, Weichung Wang, Masahiro Oda, Chiou-Shann Fuh, Kensaku Mori, Holger R. Roth:
ConDistFL: Conditional Distillation for Federated Learning from Partially Annotated Data. ISIC/Care-AI/MedAGI/DeCaF@MICCAI 2023: 311-321 - [c90]Dong Yang, Ziyue Xu, Yufan He, Vishwesh Nath, Wenqi Li, Andriy Myronenko, Ali Hatamizadeh, Can Zhao, Holger R. Roth, Daguang Xu:
DAST: Differentiable Architecture Search with Transformer for 3D Medical Image Segmentation. MICCAI (3) 2023: 747-756 - [c89]Tianyu Hwang, Chih-Hung Wang, Holger R. Roth, Dong Yang, Can Zhao, Chien-Hua Huang, Weichung Wang:
Semi-supervised Learning with Contrastive and Topology Losses for Catheter Segmentation and Misplacement Prediction. MIDL 2023: 1239-1253 - [e4]M. Emre Celebi, Md Sirajus Salekin, Hyunwoo J. Kim, Shadi Albarqouni, Catarina Barata, Allan Halpern, Philipp Tschandl, Marc Combalia, Yuan Liu, Ghada Zamzmi, Joshua Levy, Huzefa Rangwala, Annika Reinke, Diya Wynn, Bennett A. Landman, Won-Ki Jeong, Yiqing Shen, Zhongying Deng, Spyridon Bakas, Xiaoxiao Li, Chen Qin, Nicola Rieke, Holger Roth, Daguang Xu:
Medical Image Computing and Computer Assisted Intervention - MICCAI 2023 Workshops - ISIC 2023, Care-AI 2023, MedAGI 2023, DeCaF 2023, Held in Conjunction with MICCAI 2023, Vancouver, BC, Canada, October 8-12, 2023, Proceedings. Lecture Notes in Computer Science 14393, Springer 2023, ISBN 978-3-031-47400-2 [contents] - [i78]Jingwei Sun, Ziyue Xu, Dong Yang, Vishwesh Nath, Wenqi Li, Can Zhao, Daguang Xu, Yiran Chen, Holger R. Roth:
Communication-Efficient Vertical Federated Learning with Limited Overlapping Samples. CoRR abs/2303.16270 (2023) - [i77]Meirui Jiang, Holger R. Roth, Wenqi Li, Dong Yang, Can Zhao, Vishwesh Nath, Daguang Xu, Qi Dou, Ziyue Xu:
Fair Federated Medical Image Segmentation via Client Contribution Estimation. CoRR abs/2303.16520 (2023) - [i76]Andres Diaz-Pinto, Pritesh Mehta, Sachidanand Alle, Muhammad Asad, Richard Brown, Vishwesh Nath, Alvin Ihsani, Michela Antonelli, Daniel Palkovics, Csaba Pinter, Ron Alkalay, Steve Pieper, Holger R. Roth, Daguang Xu, Prerna Dogra, Tom Vercauteren, Andrew Feng, Abood Quraini, Sébastien Ourselin, M. Jorge Cardoso:
DeepEdit: Deep Editable Learning for Interactive Segmentation of 3D Medical Images. CoRR abs/2305.10655 (2023) - [i75]Pochuan Wang, Chen Shen, Weichung Wang, Masahiro Oda, Chiou-Shann Fuh, Kensaku Mori, Holger R. Roth:
ConDistFL: Conditional Distillation for Federated Learning from Partially Annotated Data. CoRR abs/2308.04070 (2023) - [i74]Jingwei Sun, Ziyue Xu, Hongxu Yin, Dong Yang, Daguang Xu, Yiran Chen, Holger R. Roth:
FedBPT: Efficient Federated Black-box Prompt Tuning for Large Language Models. CoRR abs/2310.01467 (2023) - 2022
- [j21]Chen Shen, Holger R. Roth, Yuichiro Hayashi, Masahiro Oda, Tadaaki Miyamoto, Gen Sato, Kensaku Mori:
A cascaded fully convolutional network framework for dilated pancreatic duct segmentation. Int. J. Comput. Assist. Radiol. Surg. 17(2): 343-354 (2022) - [j20]Xiahai Zhuang, Jiahang Xu, Xinzhe Luo, Chen Chen, Cheng Ouyang, Daniel Rueckert, Víctor M. Campello, Karim Lekadir, Sulaiman Vesal, Nishant Ravikumar, Yashu Liu, Gongning Luo, Jingkun Chen, Hongwei Li, Buntheng Ly, Maxime Sermesant, Holger Roth, Wentao Zhu, Jiexiang Wang, Xinghao Ding, Xinyue Wang, Sen Yang, Lei Li:
Cardiac segmentation on late gadolinium enhancement MRI: A benchmark study from multi-sequence cardiac MR segmentation challenge. Medical Image Anal. 81: 102528 (2022) - [j19]Holger R. Roth, Ziyue Xu, Carlos Tor-Díez, Ramon Sánchez-Jacob, Jonathan Zember, Jose Molto, Wenqi Li, Sheng Xu, Baris Turkbey, Evrim Turkbey, Dong Yang, Ahmed Harouni, Nicola Rieke, Shishuai Hu, Fabian Isensee, Claire Tang, Qinji Yu, Jan Sölter, Tong Zheng, Vitali Liauchuk, Ziqi Zhou, Jan Hendrik Moltz, Bruno Oliveira, Yong Xia, Klaus H. Maier-Hein, Qikai Li, Andreas Husch, Luyang Zhang, Vassili Kovalev, Li Kang, Alessa Hering, João L. Vilaça, Mona Flores, Daguang Xu, Bradford J. Wood, Marius George Linguraru:
Rapid artificial intelligence solutions in a pandemic - The COVID-19-20 Lung CT Lesion Segmentation Challenge. Medical Image Anal. 82: 102605 (2022) - [c88]Ali Hatamizadeh, Hongxu Yin, Holger Roth, Wenqi Li, Jan Kautz, Daguang Xu, Pavlo Molchanov:
GradViT: Gradient Inversion of Vision Transformers. CVPR 2022: 10011-10020 - [c87]Yucheng Tang, Dong Yang, Wenqi Li, Holger R. Roth, Bennett A. Landman, Daguang Xu, Vishwesh Nath, Ali Hatamizadeh:
Self-Supervised Pre-Training of Swin Transformers for 3D Medical Image Analysis. CVPR 2022: 20698-20708 - [c86]An Xu, Wenqi Li, Pengfei Guo, Dong Yang, Holger Roth, Ali Hatamizadeh, Can Zhao, Daguang Xu, Heng Huang, Ziyue Xu:
Closing the Generalization Gap of Cross-silo Federated Medical Image Segmentation. CVPR 2022: 20834-20843 - [c85]Pengfei Guo, Dong Yang, Ali Hatamizadeh, An Xu, Ziyue Xu, Wenqi Li, Can Zhao, Daguang Xu, Stephanie A. Harmon, Evrim Turkbey, Baris Turkbey, Bradford J. Wood, Francesca Patella, Elvira Stellato, Gianpaolo Carrafiello, Vishal M. Patel, Holger R. Roth:
Auto-FedRL: Federated Hyperparameter Optimization for Multi-institutional Medical Image Segmentation. ECCV (21) 2022: 437-455 - [c84]Andres Diaz-Pinto, Pritesh Mehta, Sachidanand Alle, Muhammad Asad, Richard Brown, Vishwesh Nath, Alvin Ihsani, Michela Antonelli, Daniel Palkovics, Csaba Pinter, Ron Alkalay, Steve Pieper, Holger R. Roth, Daguang Xu, Prerna Dogra, Tom Vercauteren, Andrew Feng, Abood Quraini, Sébastien Ourselin, M. Jorge Cardoso:
DeepEdit: Deep Editable Learning for Interactive Segmentation of 3D Medical Images. DALI@MICCAI 2022: 11-21 - [c83]Holger R. Roth, Ali Hatamizadeh, Ziyue Xu, Can Zhao, Wenqi Li, Andriy Myronenko, Daguang Xu:
Split-U-Net: Preventing Data Leakage in Split Learning for Collaborative Multi-modal Brain Tumor Segmentation. DeCaF/FAIR@MICCAI 2022: 47-57 - [c82]Chen Shen, Pochuan Wang, Dong Yang, Daguang Xu, Masahiro Oda, Po-Ting Chen, Kao-Lang Liu, Wei-Chih Liao, Chiou-Shann Fuh, Kensaku Mori, Weichung Wang, Holger R. Roth:
Joint Multi Organ and Tumor Segmentation from Partial Labels Using Federated Learning. DeCaF/FAIR@MICCAI 2022: 58-67 - [c81]Ziyue Xu, Andriy Myronenko, Dong Yang, Holger R. Roth, Can Zhao, Xiaosong Wang, Daguang Xu:
Clinical-Realistic Annotation for Histopathology Images with Probabilistic Semi-supervision: A Worst-Case Study. MICCAI (2) 2022: 77-87 - [c80]Vishwesh Nath, Dong Yang, Holger R. Roth, Daguang Xu:
Warm Start Active Learning with Proxy Labels and Selection via Semi-supervised Fine-Tuning. MICCAI (8) 2022: 297-308 - [c79]Pooneh R. Tabrizi, Holger R. Roth, Alison Tompsett, Athelia Rosa Paulli, Kelsey Brown, Joselyn Rwebembera, Emmy Okello, Andrea Z. Beaton, Craig Sable, Marius George Linguraru:
Ensembled Prediction of Rheumatic Heart Disease from Ungated Doppler Echocardiography Acquired in Low-Resource Settings. MICCAI (1) 2022: 602-612 - [c78]Chen Shen, Holger R. Roth, Vishwesh Nath, Yuichiro Hayashi, Masahiro Oda, Kazunari Misawa, Kensaku Mori:
Effective hyperparameter optimization with proxy data for multi-organ segmentation. Image Processing 2022 - [c77]Ali Hatamizadeh, Yucheng Tang, Vishwesh Nath, Dong Yang, Andriy Myronenko, Bennett A. Landman, Holger R. Roth, Daguang Xu:
UNETR: Transformers for 3D Medical Image Segmentation. WACV 2022: 1748-1758 - [e3]Shadi Albarqouni, Spyridon Bakas, Sophia Bano, M. Jorge Cardoso, Bishesh Khanal, Bennett A. Landman, Xiaoxiao Li, Chen Qin, Islem Rekik, Nicola Rieke, Holger Roth, Debdoot Sheet, Daguang Xu:
Distributed, Collaborative, and Federated Learning, and Affordable AI and Healthcare for Resource Diverse Global Health - Third MICCAI Workshop, DeCaF 2022, and Second MICCAI Workshop, FAIR 2022, Held in Conjunction with MICCAI 2022, Singapore, September 18 and 22, 2022, Proceedings. Lecture Notes in Computer Science 13573, Springer 2022, ISBN 978-3-031-18522-9 [contents] - [i73]Ali Hatamizadeh, Vishwesh Nath, Yucheng Tang, Dong Yang, Holger Roth, Daguang Xu:
Swin UNETR: Swin Transformers for Semantic Segmentation of Brain Tumors in MRI Images. CoRR abs/2201.01266 (2022) - [i72]Ali Hatamizadeh, Hongxu Yin, Pavlo Molchanov, Andriy Myronenko, Wenqi Li, Prerna Dogra, Andrew Feng, Mona G. Flores, Jan Kautz, Daguang Xu, Holger R. Roth:
Do Gradient Inversion Attacks Make Federated Learning Unsafe? CoRR abs/2202.06924 (2022) - [i71]Pengfei Guo, Dong Yang, Ali Hatamizadeh, An Xu, Ziyue Xu, Wenqi Li, Can Zhao, Daguang Xu, Stephanie A. Harmon, Evrim Turkbey, Baris Turkbey, Bradford J. Wood, Francesca Patella, Elvira Stellato, Gianpaolo Carrafiello, Vishal M. Patel, Holger R. Roth:
Auto-FedRL: Federated Hyperparameter Optimization for Multi-institutional Medical Image Segmentation. CoRR abs/2203.06338 (2022) - [i70]An Xu, Wenqi Li, Pengfei Guo, Dong Yang, Holger Roth, Ali Hatamizadeh, Can Zhao, Daguang Xu, Heng Huang, Ziyue Xu:
Closing the Generalization Gap of Cross-silo Federated Medical Image Segmentation. CoRR abs/2203.10144 (2022) - [i69]Ali Hatamizadeh, Hongxu Yin, Holger Roth, Wenqi Li, Jan Kautz, Daguang Xu, Pavlo Molchanov:
GradViT: Gradient Inversion of Vision Transformers. CoRR abs/2203.11894 (2022) - [i68]Andres Diaz-Pinto, Sachidanand Alle, Alvin Ihsani, Muhammad Asad, Vishwesh Nath, Fernando Pérez-García, Pritesh Mehta, Wenqi Li, Holger R. Roth, Tom Vercauteren, Daguang Xu, Prerna Dogra, Sébastien Ourselin, Andrew Feng, M. Jorge Cardoso:
MONAI Label: A framework for AI-assisted Interactive Labeling of 3D Medical Images. CoRR abs/2203.12362 (2022) - [i67]Ali Hatamizadeh, Ziyue Xu, Dong Yang, Wenqi Li, Holger Roth, Daguang Xu:
UNetFormer: A Unified Vision Transformer Model and Pre-Training Framework for 3D Medical Image Segmentation. CoRR abs/2204.00631 (2022) - [i66]Holger R. Roth, Ali Hatamizadeh, Ziyue Xu, Can Zhao, Wenqi Li, Andriy Myronenko, Daguang Xu:
Split-U-Net: Preventing Data Leakage in Split Learning for Collaborative Multi-Modal Brain Tumor Segmentation. CoRR abs/2208.10553 (2022) - [i65]Vishwesh Nath, Dong Yang, Holger R. Roth, Daguang Xu:
Warm Start Active Learning with Proxy Labels & Selection via Semi-Supervised Fine-Tuning. CoRR abs/2209.06285 (2022) - [i64]Holger R. Roth, Yan Cheng, Yuhong Wen, Isaac Yang, Ziyue Xu, Yuan-Ting Hsieh, Kristopher Kersten, Ahmed Harouni, Can Zhao, Kevin Lu, Zhihong Zhang, Wenqi Li, Andriy Myronenko, Dong Yang, Sean Yang, Nicola Rieke, Abood Quraini, Chester Chen, Daguang Xu, Nic Ma, Prerna Dogra, Mona Flores, Andrew Feng:
NVIDIA FLARE: Federated Learning from Simulation to Real-World. CoRR abs/2210.13291 (2022) - [i63]M. Jorge Cardoso, Wenqi Li, Richard Brown, Nic Ma, Eric Kerfoot, Yiheng Wang, Benjamin Murray, Andriy Myronenko, Can Zhao, Dong Yang, Vishwesh Nath, Yufan He, Ziyue Xu, Ali Hatamizadeh, Wentao Zhu, Yun Liu, Mingxin Zheng, Yucheng Tang, Isaac Yang, Michael Zephyr, Behrooz Hashemian, Sachidanand Alle, Mohammad Zalbagi Darestani, Charlie Budd, Marc Modat, Tom Vercauteren, Guotai Wang, Yiwen Li, Yipeng Hu, Yunguan Fu, Benjamin Gorman, Hans J. Johnson, Brad W. Genereaux, Barbaros S. Erdal, Vikash Gupta, Andres Diaz-Pinto, Andre Dourson, Lena Maier-Hein, Paul F. Jaeger, Michael Baumgartner, Jayashree Kalpathy-Cramer, Mona Flores, Justin S. Kirby, Lee A. D. Cooper, Holger R. Roth, Daguang Xu, David Bericat, Ralf Floca, S. Kevin Zhou, Haris Shuaib, Keyvan Farahani, Klaus H. Maier-Hein, Stephen R. Aylward, Prerna Dogra, Sébastien Ourselin, Andrew Feng:
MONAI: An open-source framework for deep learning in healthcare. CoRR abs/2211.02701 (2022) - 2021
- [j18]Karthik V. Sarma, Stephanie A. Harmon, Thomas Sanford, Holger R. Roth, Ziyue Xu, Jesse Tetreault, Daguang Xu, Mona G. Flores, Alex G. Raman, Rushikesh Kulkarni, Bradford J. Wood, Peter L. Choyke, Alan Priester, Leonard S. Marks, Steven S. Raman, Dieter Enzmann, Baris Turkbey, William Speier, Corey W. Arnold:
Federated learning improves site performance in multicenter deep learning without data sharing. J. Am. Medical Informatics Assoc. 28(6): 1259-1264 (2021) - [j17]Holger R. Roth, Dong Yang, Ziyue Xu, Xiaosong Wang, Daguang Xu:
Going to Extremes: Weakly Supervised Medical Image Segmentation. Mach. Learn. Knowl. Extr. 3(2): 507-524 (2021) - [j16]Dong Yang, Ziyue Xu, Wenqi Li, Andriy Myronenko, Holger R. Roth, Stephanie A. Harmon, Sheng Xu, Baris Turkbey, Evrim Turkbey, Xiaosong Wang, Wentao Zhu, Gianpaolo Carrafiello, Francesca Patella, Maurizio Cariati, Hirofumi Obinata, Hitoshi Mori, Kaku Tamura, Peng An, Bradford J. Wood, Daguang Xu:
Federated semi-supervised learning for COVID region segmentation in chest CT using multi-national data from China, Italy, Japan. Medical Image Anal. 70: 101992 (2021) - [j15]Nima Tajbakhsh, Holger Roth, Demetri Terzopoulos, Jianming Liang:
Guest Editorial Annotation-Efficient Deep Learning: The Holy Grail of Medical Imaging. IEEE Trans. Medical Imaging 40(10): 2526-2533 (2021) - [j14]Vishwesh Nath, Dong Yang, Bennett A. Landman, Daguang Xu, Holger R. Roth:
Diminishing Uncertainty Within the Training Pool: Active Learning for Medical Image Segmentation. IEEE Trans. Medical Imaging 40(10): 2534-2547 (2021) - [c76]Ali Hatamizadeh, Vishwesh Nath, Yucheng Tang, Dong Yang, Holger R. Roth, Daguang Xu:
Swin UNETR: Swin Transformers for Semantic Segmentation of Brain Tumors in MRI Images. BrainLes@MICCAI (1) 2021: 272-284 - [c75]Chen Shen, Holger R. Roth, Yuichiro Hayashi, Masahiro Oda, Tadaaki Miyamoto, Gen Sato, Kensaku Mori:
Attention-Guided Pancreatic Duct Segmentation from Abdominal CT Volumes. CLIP/DCL/LL-COVID19/PPML@MICCAI 2021: 46-55 - [c74]Chen Shen, Pochuan Wang, Holger R. Roth, Dong Yang, Daguang Xu, Masahiro Oda, Weichung Wang, Chiou-Shann Fuh, Po-Ting Chen, Kao-Lang Liu, Wei-Chih Liao, Kensaku Mori:
Multi-task Federated Learning for Heterogeneous Pancreas Segmentation. CLIP/DCL/LL-COVID19/PPML@MICCAI 2021: 101-110 - [c73]Yufan He, Dong Yang, Holger Roth, Can Zhao, Daguang Xu:
DiNTS: Differentiable Neural Network Topology Search for 3D Medical Image Segmentation. CVPR 2021: 5841-5850 - [c72]Dong Yang, Andriy Myronenko, Xiaosong Wang, Ziyue Xu, Holger R. Roth, Daguang Xu:
T-AutoML: Automated Machine Learning for Lesion Segmentation using Transformers in 3D Medical Imaging. ICCV 2021: 3942-3954 - [c71]Andriy Myronenko, Ziyue Xu, Dong Yang, Holger R. Roth, Daguang Xu:
Accounting for Dependencies in Deep Learning Based Multiple Instance Learning for Whole Slide Imaging. MICCAI (8) 2021: 329-338 - [c70]Holger R. Roth, Dong Yang, Wenqi Li, Andriy Myronenko, Wentao Zhu, Ziyue Xu, Xiaosong Wang, Daguang Xu:
Federated Whole Prostate Segmentation in MRI with Personalized Neural Architectures. MICCAI (3) 2021: 357-366 - [c69]Vishwesh Nath, Dong Yang, Ali Hatamizadeh, Anas A. Abidin, Andriy Myronenko, Holger R. Roth, Daguang Xu:
The Power of Proxy Data and Proxy Networks for Hyper-parameter Optimization in Medical Image Segmentation. MICCAI (3) 2021: 456-465 - [c68]Jun-Ting Chen, Yu-Cheng Huang, Holger Roth, Dong Yang, Chih-Kuo Lee, Wen-Jeng Lee, Tzung-Dau Wang, Cheng-Ying Chou, Weichung Wang:
Detection and Classification of Coronary Artery Plaques in Coronary Computed Tomography Angiography Using 3D CNN. STACOM@MICCAI 2021: 208-218 - [e2]Cristina Oyarzun Laura, M. Jorge Cardoso, Michal Rosen-Zvi, Georgios Kaissis, Marius George Linguraru, Raj Shekhar, Stefan Wesarg, Marius Erdt, Klaus Drechsler, Yufei Chen, Shadi Albarqouni, Spyridon Bakas, Bennett A. Landman, Nicola Rieke, Holger Roth, Xiaoxiao Li, Daguang Xu, Maria Gabrani, Ender Konukoglu, Michal Guindy, Daniel Rueckert, Alexander Ziller, Dmitrii Usynin, Jonathan Passerat-Palmbach:
Clinical Image-Based Procedures, Distributed and Collaborative Learning, Artificial Intelligence for Combating COVID-19 and Secure and Privacy-Preserving Machine Learning - 10th Workshop, CLIP 2021, Second Workshop, DCL 2021, First Workshop, LL-COVID19 2021, and First Workshop and Tutorial, PPML 2021, Held in Conjunction with MICCAI 2021, Strasbourg, France, September 27 and October 1, 2021, Proceedings. Lecture Notes in Computer Science 12969, Springer 2021, ISBN 978-3-030-90873-7 [contents] - [i62]Vishwesh Nath, Dong Yang, Bennett A. Landman, Daguang Xu, Holger R. Roth:
Diminishing Uncertainty within the Training Pool: Active Learning for Medical Image Segmentation. CoRR abs/2101.02323 (2021) - [i61]Ali Hatamizadeh, Dong Yang, Holger Roth, Daguang Xu:
UNETR: Transformers for 3D Medical Image Segmentation. CoRR abs/2103.10504 (2021) - [i60]Yufan He, Dong Yang, Holger Roth, Can Zhao, Daguang Xu:
DiNTS: Differentiable Neural Network Topology Search for 3D Medical Image Segmentation. CoRR abs/2103.15954 (2021) - [i59]Yingda Xia, Dong Yang, Wenqi Li, Andriy Myronenko, Daguang Xu, Hirofumi Obinata, Hitoshi Mori, Peng An, Stephanie A. Harmon, Evrim Turkbey, Baris Turkbey, Bradford J. Wood, Francesca Patella, Elvira Stellato, Gianpaolo Carrafiello, Anna Ierardi, Alan L. Yuille, Holger Roth:
Auto-FedAvg: Learnable Federated Averaging for Multi-Institutional Medical Image Segmentation. CoRR abs/2104.10195 (2021) - [i58]Vishwesh Nath, Dong Yang, Ali Hatamizadeh, Anas A. Abidin, Andriy Myronenko, Holger Roth, Daguang Xu:
The Power of Proxy Data and Proxy Networks for Hyper-Parameter Optimization in Medical Image Segmentation. CoRR abs/2107.05471 (2021) - [i57]Holger R. Roth, Dong Yang, Wenqi Li, Andriy Myronenko, Wentao Zhu, Ziyue Xu, Xiaosong Wang, Daguang Xu:
Federated Whole Prostate Segmentation in MRI with Personalized Neural Architectures. CoRR abs/2107.08111 (2021) - [i56]Chen Shen, Pochuan Wang, Holger R. Roth, Dong Yang, Daguang Xu, Masahiro Oda, Weichung Wang, Chiou-Shann Fuh, Po-Ting Chen, Kao-Lang Liu, Wei-Chih Liao, Kensaku Mori:
Multi-task Federated Learning for Heterogeneous Pancreas Segmentation. CoRR abs/2108.08537 (2021) - [i55]Andriy Myronenko, Ziyue Xu, Dong Yang, Holger Roth, Daguang Xu:
Accounting for Dependencies in Deep Learning Based Multiple Instance Learning for Whole Slide Imaging. CoRR abs/2111.01556 (2021) - [i54]Dong Yang, Andriy Myronenko, Xiaosong Wang, Ziyue Xu, Holger R. Roth, Daguang Xu:
T-AutoML: Automated Machine Learning for Lesion Segmentation using Transformers in 3D Medical Imaging. CoRR abs/2111.07535 (2021) - [i53]Yucheng Tang, Dong Yang, Wenqi Li, Holger Roth, Bennett A. Landman, Daguang Xu, Vishwesh Nath, Ali Hatamizadeh:
Self-Supervised Pre-Training of Swin Transformers for 3D Medical Image Analysis. CoRR abs/2111.14791 (2021) - 2020
- [j13]Yingda Xia, Dong Yang, Zhiding Yu, Fengze Liu, Jinzheng Cai, Lequan Yu, Zhuotun Zhu, Daguang Xu, Alan L. Yuille, Holger Roth:
Uncertainty-aware multi-view co-training for semi-supervised medical image segmentation and domain adaptation. Medical Image Anal. 65: 101766 (2020) - [j12]Nicola Rieke, Jonny Hancox, Wenqi Li, Fausto Milletarì, Holger R. Roth, Shadi Albarqouni, Spyridon Bakas, Mathieu N. Galtier, Bennett A. Landman, Klaus H. Maier-Hein, Sébastien Ourselin, Micah J. Sheller, Ronald M. Summers, Andrew Trask, Daguang Xu, Maximilian Baust, M. Jorge Cardoso:
The future of digital health with federated learning. npj Digit. Medicine 3 (2020) - [j11]Ling Zhang, Xiaosong Wang, Dong Yang, Thomas Sanford, Stephanie A. Harmon, Baris Turkbey, Bradford J. Wood, Holger Roth, Andriy Myronenko, Daguang Xu, Ziyue Xu:
Generalizing Deep Learning for Medical Image Segmentation to Unseen Domains via Deep Stacked Transformation. IEEE Trans. Medical Imaging 39(7): 2531-2540 (2020) - [c67]Qihang Yu, Dong Yang, Holger Roth, Yutong Bai, Yixiao Zhang, Alan L. Yuille, Daguang Xu:
C2FNAS: Coarse-to-Fine Neural Architecture Search for 3D Medical Image Segmentation. CVPR 2020: 4125-4134 - [c66]