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2020 – today
- 2024
[j95]Ruining Deng
, Can Cui, Lucas W. Remedios, Shunxing Bao, R. Michael Womick, Sophie Chiron, Jia Li, Joseph T. Roland, Ken S. Lau, Qi Liu, Keith T. Wilson, Yaohong Wang, Lori A. Coburn, Bennett A. Landman, Yuankai Huo:
Cross-scale multi-instance learning for pathological image diagnosis. Medical Image Anal. 94: 103124 (2024)- [j94]Praitayini Kanakaraj, Tianyuan Yao, Leon Y. Cai, Ho Hin Lee, Nancy R. Newlin, Michael E. Kim, Chenyu Gao, Kimberly R. Pechman, Derek B. Archer, Timothy J. Hohman, Angela L. Jefferson, Lori L. Beason-Held, Susan M. Resnick, Eleftherios Garyfallidis, Adam W. Anderson, Kurt G. Schilling, Bennett A. Landman, Daniel Moyer:
DeepN4: Learning N4ITK Bias Field Correction for T1-weighted Images. Neuroinformatics 22(2): 193-205 (2024) - [c177]Shunxing Bao, Junlin Guo, Ho Hin Lee, Ruining Deng, Can Cui, Lucas W. Remedios, Quan Liu, Qi Yang, Kaiwen Xu, Xin Yu, Jia Li, Yike Li, Joseph T. Roland, Qi Liu, Ken S. Lau, Keith T. Wilson, Lori A. Coburn, Bennett A. Landman, Yuankai Huo:
Mitigating Over-Saturated Fluorescence Images Through a Semi-Supervised Generative Adversarial Network. ISBI 2024: 1-5 - [i112]Ho Hin Lee, Adam M. Saunders, Michael E. Kim, Samuel W. Remedios, Yucheng Tang, Qi Yang, Xin Yu, Shunxing Bao, Chloe Cho, Louise A. Mawn, Tonia S. Rex, Kevin L. Schey, Blake E. Dewey, Jeffrey M. Spraggins, Jerry L. Prince, Yuankai Huo, Bennett A. Landman:
Super-Resolution Multi-Contrast Unbiased Eye Atlases With Deep Probabilistic Refinement. CoRR abs/2401.03060 (2024) - [i111]Lucas W. Remedios, Shunxing Bao, Samuel W. Remedios, Ho Hin Lee, Leon Y. Cai, Thomas Z. Li, Ruining Deng, Can Cui, Jia Li, Qi Liu, Ken S. Lau, Joseph T. Roland, Mary K. Washington, Lori A. Coburn, Keith T. Wilson, Yuankai Huo, Bennett A. Landman:
Nucleus subtype classification using inter-modality learning. CoRR abs/2401.05602 (2024) - [i110]Ho Hin Lee, Yu Gu, Theodore Zhao, Yanbo Xu, Jianwei Yang, Naoto Usuyama, Cliff Wong, Mu Wei, Bennett A. Landman, Yuankai Huo, Alberto Santamaría-Pang, Hoifung Poon:
Foundation Models for Biomedical Image Segmentation: A Survey. CoRR abs/2401.07654 (2024) - [i109]Thomas A. Lasko, John M. Still, Thomas Z. Li, Marco Barbero Mota, William W. Stead, Eric V. Strobl, Bennett A. Landman, Fabien Maldonado:
Unsupervised Discovery of Clinical Disease Signatures Using Probabilistic Independence. CoRR abs/2402.05802 (2024) - [i108]Chenyu Gao, Shunxing Bao, Michael E. Kim, Nancy Newlin, Praitayini Kanakaraj, Tianyuan Yao, Gaurav Rudravaram, Yuankai Huo, Daniel Moyer, Kurt Schilling, Walter Kukull, Arthur W. Toga, Derek B. Archer, Timothy J. Hohman, Bennett A. Landman, Zhiyuan Li:
Field-of-View Extension for Diffusion MRI via Deep Generative Models. CoRR abs/2405.03652 (2024) - [i107]Xin Yu, Qi Yang, Han Liu, Ho Hin Lee, Yucheng Tang, Lucas W. Remedios, Michael E. Kim, Shunxing Bao, Ann Xenobia Moore, Luigi Ferrucci, Bennett A. Landman:
Enhancing Single-Slice Segmentation with 3D-to-2D Unpaired Scan Distillation. CoRR abs/2406.12254 (2024) - [i106]Lucas W. Remedios, Shunxing Bao, Samuel W. Remedios, Ho Hin Lee, Leon Y. Cai, Thomas Z. Li, Ruining Deng, Nancy R. Newlin, Adam M. Saunders, Can Cui, Jia Li, Qi Liu, Ken S. Lau, Joseph T. Roland, Mary K. Washington, Lori A. Coburn, Keith T. Wilson, Yuankai Huo, Bennett A. Landman:
Data-driven Nucleus Subclassification on Colon H&E using Style-transferred Digital Pathology. CoRR abs/2407.06116 (2024) - [i105]Michael E. Kim, Karthik Ramadass, Chenyu Gao, Praitayini Kanakaraj, Nancy R. Newlin, Gaurav Rudravaram, Kurt G. Schilling, Blake E. Dewey, Derek B. Archer, Timothy J. Hohman, Zhiyuan Li, Shunxing Bao, Bennett A. Landman, Nazirah Mohd Khairi:
Scalable, reproducible, and cost-effective processing of large-scale medical imaging datasets. CoRR abs/2408.14611 (2024) - [i104]Lucas W. Remedios, Han Liu, Samuel W. Remedios, Lianrui Zuo, Adam M. Saunders, Shunxing Bao, Yuankai Huo, Alvin C. Powers, John Virostko, Bennett A. Landman:
Influence of Early through Late Fusion on Pancreas Segmentation from Imperfectly Registered Multimodal MRI. CoRR abs/2409.04563 (2024) - [i103]Zhiyuan Li, Tianyuan Yao, Praitayini Kanakaraj, Chenyu Gao, Shunxing Bao, Lianrui Zuo, Michael E. Kim, Nancy R. Newlin, Gaurav Rudravaram, Nazirah Mohd Khairi, Yuankai Huo, Kurt G. Schilling, Walter Kukull, Arthur W. Toga, Derek B. Archer, Timothy J. Hohman, Bennett A. Landman:
Multi-Modality Conditioned Variational U-Net for Field-of-View Extension in Brain Diffusion MRI. CoRR abs/2409.13846 (2024) - [i102]Michael E. Kim, Chenyu Gao, Karthik Ramadass, Praitayini Kanakaraj, Nancy R. Newlin, Gaurav Rudravaram, Kurt G. Schilling, Blake E. Dewey, David A. Bennett, Sid OBryant, Robert C. Barber, Derek B. Archer, Timothy J. Hohman, Shunxing Bao, Zhiyuan Li, Bennett A. Landman, Nazirah Mohd Khairi, Alzheimer's Disease Neuroimaging Initiative, HABSHD Study Team:
Scalable quality control on processing of large diffusion-weighted and structural magnetic resonance imaging datasets. CoRR abs/2409.17286 (2024) - [i101]Chenyu Gao, Michael E. Kim, Karthik Ramadass, Praitayini Kanakaraj, Aravind R. Krishnan, Adam M. Saunders, Nancy R. Newlin, Ho Hin Lee, Qi Yang, Warren D. Taylor, Brian D. Boyd, Lori L. Beason-Held, Susan M. Resnick, Lisa L. Barnes, David A. Bennett, Katherine D. Van Schaik, Derek B. Archer, Timothy J. Hohman, Angela L. Jefferson, Ivana Isgum, Daniel Moyer, Yuankai Huo, Kurt G. Schilling, Lianrui Zuo, Shunxing Bao, Nazirah Mohd Khairi, Zhiyuan Li, Christos Davatzikos, Bennett A. Landman:
Brain age identification from diffusion MRI synergistically predicts neurodegenerative disease. CoRR abs/2410.22454 (2024) - [i100]Xinran Liu, Yikun Bai, Rocio Diaz Martin, Kaiwen Shi, Ashkan Shahbazi, Bennett A. Landman, Catie Chang, Soheil Kolouri:
Linear Spherical Sliced Optimal Transport: A Fast Metric for Comparing Spherical Data. CoRR abs/2411.06055 (2024) - [i99]Nancy R. Newlin, Kurt Schilling, Serge Koudoro, Bramsh Qamar Chandio, Praitayini Kanakaraj, Daniel Moyer, Claire E. Kelly, Sila Genc, Jian Chen, Joseph Yuan-Mou Yang, Ye Wu, Yifei He, Jiawei Zhang, Qingrun Zeng, Fan Zhang, Nagesh Adluru, Vishwesh Nath, Sudhir K. Pathak, Walter Schneider, Anurag Gade, Yogesh Rathi, Tom Hendriks, Anna Vilanova, Maxime Chamberland, Tomasz Pieciak, Dominika Ciupek, Antonio Tristán Vega, Santiago Aja-Fernández, Maciej Malawski, Gani Ouedraogo, Julia Machnio, Christian Ewert, Paul M. Thompson, Neda Jahanshad, Eleftherios Garyfallidis, Bennett A. Landman:
MICCAI-CDMRI 2023 QuantConn Challenge Findings on Achieving Robust Quantitative Connectivity through Harmonized Preprocessing of Diffusion MRI. CoRR abs/2411.09618 (2024) - 2023
- [j93]Yue Liu, Shunxing Bao, Dario J. Englot, Victoria L. Morgan, Warren D. Taylor, Ying Wei, Ipek Oguz, Bennett A. Landman, Ilwoo Lyu:
Hierarchical particle optimization for cortical shape correspondence in temporal lobe resection. Comput. Biol. Medicine 152: 106414 (2023) - [j92]Jun Li, Junyu Chen, Yucheng Tang, Ce Wang, Bennett A. Landman, S. Kevin Zhou:
Transforming medical imaging with Transformers? A comparative review of key properties, current progresses, and future perspectives. Medical Image Anal. 85: 102762 (2023) - [j91]Kaiwen Xu, Thomas Z. Li, Mirza S. Khan, Riqiang Gao, Sanja L. Antic, Yuankai Huo, Kim L. Sandler, Fabien Maldonado, Bennett A. Landman:
Body composition assessment with limited field-of-view computed tomography: A semantic image extension perspective. Medical Image Anal. 88: 102852 (2023) - [j90]Xin Yu, Qi Yang, Yinchi Zhou, Leon Y. Cai, Riqiang Gao, Ho Hin Lee, Thomas Z. Li, Shunxing Bao, Zhoubing Xu, Thomas A. Lasko, Richard G. Abramson, Zizhao Zhang, Yuankai Huo, Bennett A. Landman, Yucheng Tang:
UNesT: Local spatial representation learning with hierarchical transformer for efficient medical segmentation. Medical Image Anal. 90: 102939 (2023) - [j89]Kurt G. Schilling, Shreyas Fadnavis, Joshua Batson, Mereze Visagie, Anna J. E. Combes, Samantha By, Colin D. Mcknight, Francesca Bagnato, Eleftherios Garyfallidis, Bennett A. Landman, Seth A. Smith, Kristin P. O'Grady:
Denoising of diffusion MRI in the cervical spinal cord - effects of denoising strategy and acquisition on intra-cord contrast, signal modeling, and feature conspicuity. NeuroImage 266: 119826 (2023) - [j88]Gabriel Girard, Jonathan Rafael-Patino, Raphaël Truffet, Dogu Baran Aydogan, Nagesh Adluru, Veena A. Nair, Vivek Prabhakaran, Barbara B. Bendlin, Andrew L. Alexander, Sara Bosticardo, Ilaria Gabusi, Mario Ocampo-Pineda, Matteo Battocchio, Zuzana Piskorova, Pietro Bontempi, Simona Schiavi, Alessandro Daducci, Aleksandra Stafiej, Dominika Ciupek, Fabian Bogusz, Tomasz Pieciak, Matteo Frigo, Sara Sedlar, Samuel Deslauriers-Gauthier, Ivana Kojcic, Mauro Zucchelli, Hiba Laghrissi, Yang Ji, Rachid Deriche, Kurt G. Schilling, Bennett A. Landman, Alberto Cacciola, Gianpaolo Antonio Basile, Salvatore Bertino, Nancy Newlin, Praitayini Kanakaraj, Francois Rheault, Patryk Filipiak, Timothy M. Shepherd, Ying-Chia Lin, Dimitris G. Placantonakis, Fernando E. Boada, Steven H. Baete, Erick Hernandez-Gutierrez, Alonso Ramirez-Manzanares, Ricardo Coronado-Leija, Pablo Stack-Sánchez, Luis Concha, Maxime Descoteaux, Sina Mansour L, Caio Seguin, Andrew Zalesky, Kenji Marshall, Erick Jorge Canales-Rodríguez, Ye Wu, Sahar Ahmad, Pew-Thian Yap, Antoine Théberge, Florence Gagnon, Frédéric Massi, Elda Fischi Gomez, Remy Gardier, Juan Luis Villarreal-Haro, Marco Pizzolato, Emmanuel Caruyer, Jean-Philippe Thiran:
Tractography passes the test: Results from the diffusion-simulated connectivity (disco) challenge. NeuroImage 277: 120231 (2023) - [j87]Yurui Gao, Yu Zhao, Muwei Li, Richard D. Lawless, Kurt G. Schilling, Lyuan Xu, Andrea T. Shafer, Lori L. Beason-Held, Susan M. Resnick, Baxter P. Rogers, Zhaohua Ding, Adam W. Anderson, Bennett A. Landman, John C. Gore:
Functional alterations in bipartite network of white and grey matters during aging. NeuroImage 278: 120277 (2023) - [j86]Ho Hin Lee, Yucheng Tang, Qi Yang, Xin Yu, Leon Y. Cai, Lucas W. Remedios, Shunxing Bao, Bennett A. Landman, Yuankai Huo:
Semantic-Aware Contrastive Learning for Multi-Object Medical Image Segmentation. IEEE J. Biomed. Health Informatics 27(9): 4444-4453 (2023) - [j85]Alessa Hering, Lasse Hansen, Tony C. W. Mok, Albert C. S. Chung, Hanna Siebert, Stephanie Häger, Annkristin Lange, Sven Kuckertz, Stefan Heldmann, Wei Shao, Sulaiman Vesal, Mirabela Rusu, Geoffrey A. Sonn, Théo Estienne, Maria Vakalopoulou, Luyi Han, Yunzhi Huang, Pew-Thian Yap, Mikael Brudfors, Yaël Balbastre, Samuel Joutard, Marc Modat, Gal Lifshitz, Dan Raviv, Jinxin Lv, Qiang Li, Vincent Jaouen, Dimitris Visvikis, Constance Fourcade, Mathieu Rubeaux, Wentao Pan, Zhe Xu, Bailiang Jian, Francesca De Benetti, Marek Wodzinski, Niklas Gunnarsson, Jens Sjölund, Daniel Grzech, Huaqi Qiu, Zeju Li, Alexander Thorley, Jinming Duan, Christoph Großbröhmer, Andrew Hoopes, Ingerid Reinertsen, Yiming Xiao, Bennett A. Landman, Yuankai Huo, Keelin Murphy, Nikolas Lessmann, Bram van Ginneken, Adrian V. Dalca, Mattias P. Heinrich:
Learn2Reg: Comprehensive Multi-Task Medical Image Registration Challenge, Dataset and Evaluation in the Era of Deep Learning. IEEE Trans. Medical Imaging 42(3): 697-712 (2023) - [c176]Jie Liu, Yixiao Zhang, Jieneng Chen, Junfei Xiao, Yongyi Lu, Bennett A. Landman, Yixuan Yuan, Alan L. Yuille, Yucheng Tang, Zongwei Zhou:
CLIP-Driven Universal Model for Organ Segmentation and Tumor Detection. ICCV 2023: 21095-21107 - [c175]Ho Hin Lee, Shunxing Bao, Yuankai Huo, Bennett A. Landman:
3D UX-Net: A Large Kernel Volumetric ConvNet Modernizing Hierarchical Transformer for Medical Image Segmentation. ICLR 2023 - [c174]Tianyuan Yao, Nancy Newlin, Praitayini Kanakaraj, Vishwesh Nath, Leon Y. Cai, Karthik Ramadass, Kurt Schilling, Bennett A. Landman, Yuankai Huo:
A Unified Learning Model for Estimating Fiber Orientation Distribution Functions on Heterogeneous Multi-shell Diffusion-Weighted MRI. CDMRI@MICCAI 2023: 13-22 - [c173]Can Cui, Yaohong Wang, Shunxing Bao, Yucheng Tang, Ruining Deng, Lucas W. Remedios, Zuhayr Asad, Joseph T. Roland, Ken S. Lau, Qi Liu, Lori A. Coburn, Keith T. Wilson, Bennett A. Landman, Yuankai Huo:
Feasibility of Universal Anomaly Detection Without Knowing the Abnormality in Medical Images. MILLanD@MICCAI 2023: 82-92 - [c172]Ho Hin Lee, Quan Liu, Shunxing Bao, Qi Yang, Xin Yu, Leon Y. Cai, Thomas Z. Li, Yuankai Huo, Xenofon D. Koutsoukos, Bennett A. Landman:
Scaling up 3D Kernels with Bayesian Frequency Re-parameterization for Medical Image Segmentation. MICCAI (4) 2023: 632-641 - [c171]Thomas Z. Li, John M. Still, Kaiwen Xu, Ho Hin Lee, Leon Y. Cai, Aravind R. Krishnan, Riqiang Gao, Mirza S. Khan, Sanja Antic, Michael N. Kammer, Kim L. Sandler, Fabien Maldonado, Bennett A. Landman, Thomas A. Lasko:
Longitudinal Multimodal Transformer Integrating Imaging and Latent Clinical Signatures from Routine EHRs for Pulmonary Nodule Classification. MICCAI (2) 2023: 649-659 - [c170]Leon Yichen Cai, Ho Hin Lee, Nancy Rose Newlin, Cailey Irene Kerley, Praitayini Kanakaraj, Qi Yang, Graham Walter Johnson, Daniel Moyer, Kurt Gregory Schilling, Francois Rheault, Bennett A. Landman:
Convolutional-recurrent neural networks approximate diffusion tractography from T1-weighted MRI and associated anatomical context. MIDL 2023: 1124-1143 - [c169]Shunxing Bao, Ho Hin Lee, Qi Yang, Lucas Walker Remedios, Ruining Deng, Can Cui, Leon Yichen Cai, Kaiwen Xu, Xin Yu, Sophie Chiron, Yike Li, Nathan Heath Patterson, Yaohong Wang, Jia Li, Qi Liu, Ken S. Lau, Joseph T. Roland, Lori A. Coburn, Keith T. Wilson, Bennett A. Landman, Yuankai Huo:
Alleviating tiling effect by random walk sliding window in high-resolution histological whole slide image synthesis. MIDL 2023: 1406-1422 - [c168]Shunxing Bao, Can Cui, Jia Li, Yucheng Tang, Ho Hin Lee, Ruining Deng, Lucas W. Remedios, Xin Yu, Qi Yang, Sophie Chiron, Nathan Heath Patterson, Ken S. Lau, Qi Liu, Joseph T. Roland, Lori A. Coburn, Keith T. Wilson, Bennett A. Landman, Yuankai Huo:
Topological-preserving membrane skeleton segmentation in multiplex immunofluorescence imaging. Digital and Computational Pathology 2023 - [c167]Can Cui, Shunxing Bao, Jia Li, Ruining Deng, Lucas W. Remedios, Zuhayr Asad, Sophie Chiron, Ken S. Lau, Yaohong Wang, Lori A. Coburn, Keith T. Wilson, Joseph T. Roland, Bennett A. Landman, Qi Liu, Yuankai Huo:
Influence of cell-type ratio on spatially resolved single-cell transcriptomes using the Tangram algorithm: based on implementation on single-cell and MxIF data. Digital and Computational Pathology 2023 - [c166]Lucas W. Remedios, Shunxing Bao, Cailey I. Kerley, Leon Y. Cai, François Rheault, Ruining Deng, Can Cui, Sophie Chiron, Ken S. Lau, Joseph T. Roland, Mary K. Washington, Lori A. Coburn, Keith T. Wilson, Yuankai Huo, Bennett A. Landman:
Predicting Crohn's disease severity in the colon using mixed cell nucleus density from pseudo labels. Digital and Computational Pathology 2023 - [c165]Xin Yu, Yucheng Tang, Qi Yang, Ho Hin Lee, Riqiang Gao, Shunxing Bao, Ann Zenobia Moore, Luigi Ferrucci, Bennett A. Landman:
Longitudinal variability analysis on low-dose abdominal CT with deep learning-based segmentation. Image Processing 2023 - [c164]Lucie Dole, Kurt G. Schilling, Hakmook Kang, John C. Gore, Bennett A. Landman:
Harmonization of repetition time and scanner effects on estimates of brain hemodynamic response function. Image Processing 2023 - [c163]Yurui Gao, Dylan R. Lawless, Muwei Li, Yu Zhao, Kurt G. Schilling, Lyuan Xu, Andrea T. Shafer, Lori L. Beason-Held, Susan M. Resnick, Baxter P. Rogers, Zhaohua Ding, Adam W. Anderson, Bennett A. Landman, John C. Gore:
Automatic preprocessing pipeline for white matter functional analyses of large-scale databases. Image Processing 2023 - [c162]Praitayini Kanakaraj, Francois Rheault, Leon Y. Cai, Nancy Newlin, Fang-Cheng Yeh, Baxter P. Rogers, Kurt G. Schilling, Bennett A. Landman:
Mapping the impact of approximate gradient nonlinearity fields correction on tractography. Image Processing 2023 - [c161]Cailey I. Kerley, Leon Y. Cai, Yucheng Tang, Lori L. Beason-Held, Susan M. Resnick, Laurie E. Cutting, Bennett A. Landman:
Batch size go big or go home: counterintuitive improvement in medical autoencoders with smaller batch size. Image Processing 2023 - [c160]Bennett A. Landman:
Design and implementation of a real-time research data warehouse: lessons learned from Vanderbilt's ImageVU (Conference Presentation). Image Processing 2023 - [c159]Ho Hin Lee, Yucheng Tang, Shunxing Bao, Qi Yang, Xin Yu, Kevin L. Schey, Jeffrey M. Spraggins, Yuankai Huo, Bennett A. Landman:
Unsupervised registration refinement for generating unbiased eye atlas. Image Processing 2023 - [c158]Thomas Z. Li, Kaiwen Xu, Riqiang Gao, Yucheng Tang, Thomas A. Lasko, Fabien Maldonado, Kim L. Sandler, Bennett A. Landman:
Time-distance vision transformers in lung cancer diagnosis from longitudinal computed tomography. Image Processing 2023 - [c157]Nancy R. Newlin, Leon Y. Cai, Tianyuan Yao, Derek B. Archer, Kurt G. Schilling, Timothy J. Hohman, Kimberly R. Pechman, Angela L. Jefferson, Andrea T. Shafer, Susan M. Resnick, Bennett A. Landman:
Comparing voxel- and feature-wise harmonization of complex graph measures from multiple sites for structural brain network investigation of aging. Image Processing 2023 - [c156]Karthik Ramadass, Xin Yu, Leon Y. Cai, Yucheng Tang, Shunxing Bao, Cailey I. Kerley, Micah D'Archangel, Laura A. Barquero, Allen T. Newton, Isabel Gauthier, Rankin W. McGugin, Benoit M. Dawant, Laurie E. Cutting, Yuankai Huo, Bennett A. Landman:
Deep whole brain segmentation of 7T structural MRI. Image Processing 2023 - [c155]Kaiwen Xu, Mirza S. Khan, Thomas Z. Li, Riqiang Gao, Sanja L. Antic, Yuankai Huo, Kim L. Sandler, Fabien Maldonado, Bennett A. Landman:
Stratification of lung cancer risk with thoracic imaging phenotypes. Image Processing 2023 - [c154]Tianyuan Yao, Francois Rheault, Leon Y. Cai, Vishwesh Nath, Zuhayr Asad, Nancy Newlin, Can Cui, Ruining Deng, Karthik Ramadass, Kurt Schilling, Bennett A. Landman, Yuankai Huo:
Deep constrained spherical deconvolution for robust harmonization. Image Processing 2023 - [c153]Tian Yu, Leon Y. Cai, Victoria L. Morgan, Sarah E. Goodale, Dario J. Englot, Catherine E. Chang, Bennett A. Landman, Kurt G. Schilling:
SynBOLD-DisCo: synthetic BOLD images for distortion correction of fMRI without additional calibration scans. Image Processing 2023 - [e11]M. Emre Celebi, Md Sirajus Salekin, Hyunwoo J. Kim, Shadi Albarqouni, Catarina Barata, Allan Halpern, Philipp Tschandl, Marc Combalia, Yuan Liu, Ghada Zamzmi, Joshua Levy, Huzefa Rangwala, Annika Reinke, Diya Wynn, Bennett A. Landman, Won-Ki Jeong, Yiqing Shen, Zhongying Deng, Spyridon Bakas, Xiaoxiao Li, Chen Qin, Nicola Rieke, Holger Roth, Daguang Xu:
Medical Image Computing and Computer Assisted Intervention - MICCAI 2023 Workshops - ISIC 2023, Care-AI 2023, MedAGI 2023, DeCaF 2023, Held in Conjunction with MICCAI 2023, Vancouver, BC, Canada, October 8-12, 2023, Proceedings. Lecture Notes in Computer Science 14393, Springer 2023, ISBN 978-3-031-47400-2 [contents] - [e10]Ipek Oguz, Jack H. Noble, Xiaoxiao Li, Martin Styner, Christian Baumgartner, Mirabela Rusu, Tobias Heimann, Despina Kontos, Bennett A. Landman, Benoit M. Dawant:
Medical Imaging with Deep Learning, MIDL 2023, 10-12 July 2023, Nashville, TN, USA. Proceedings of Machine Learning Research 227, PMLR 2023 [contents] - [i98]Jie Liu, Yixiao Zhang, Jieneng Chen, Junfei Xiao, Yongyi Lu, Bennett A. Landman, Yixuan Yuan, Alan L. Yuille, Yucheng Tang, Zongwei Zhou:
CLIP-Driven Universal Model for Organ Segmentation and Tumor Detection. CoRR abs/2301.00785 (2023) - [i97]Annika Reinke, Minu Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Emre Kavur, Tim Rädsch, Carole H. Sudre, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Matthew B. Blaschko, Florian Büttner, M. Jorge Cardoso, Veronika Cheplygina, Jianxu Chen, Evangelia Christodoulou, Beth A. Cimini, Gary S. Collins, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Ben Glocker, Patrick Godau, Robert Haase, Daniel A. Hashimoto, Michael M. Hoffman, Merel Huisman, Fabian Isensee, Pierre Jannin, Charles E. Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Alan Karthikesalingam, Hannes Kenngott, Jens Kleesiek, Florian Kofler, Thijs Kooi, Annette Kopp-Schneider, Michal Kozubek, Anna Kreshuk, Tahsin M. Kurç, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus H. Maier-Hein, Anne L. Martel, Peter Mattson, Erik Meijering, Bjoern H. Menze, Karel G. M. Moons, Henning Müller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Susanne M. Rafelski, Nasir M. Rajpoot, Mauricio Reyes, Michael A. Riegler, Nicola Rieke, Julio Saez-Rodriguez, Clara I. Sánchez, Shravya Shetty, Maarten van Smeden, Ronald M. Summers, Abdel A. Taha, Aleksei Tiulpin, Sotirios A. Tsaftaris, Ben Van Calster, Gaël Varoquaux, Manuel Wiesenfarth, Ziv R. Yaniv, Paul F. Jäger, Lena Maier-Hein:
Understanding metric-related pitfalls in image analysis validation. CoRR abs/2302.01790 (2023) - [i96]Ho Hin Lee, Quan Liu, Shunxing Bao, Qi Yang, Xin Yu, Leon Y. Cai, Thomas Z. Li, Yuankai Huo, Xenofon D. Koutsoukos, Bennett A. Landman:
Scaling Up 3D Kernels with Bayesian Frequency Re-parameterization for Medical Image Segmentation. CoRR abs/2303.05785 (2023) - [i95]Tianyuan Yao, Nancy Newlin, Praitayini Kanakaraj, Vishwesh Nath, Leon Y. Cai, Karthik Ramadass, Kurt Schilling, Bennett A. Landman, Yuankai Huo:
A Unified Single-stage Learning Model for Estimating Fiber Orientation Distribution Functions on Heterogeneous Multi-shell Diffusion-weighted MRI. CoRR abs/2303.16376 (2023) - [i94]Ruining Deng, Can Cui, Lucas W. Remedios, Shunxing Bao, R. Michael Womick, Sophie Chiron, Jia Li, Joseph T. Roland, Ken S. Lau, Qi Liu, Keith T. Wilson, Yaohong Wang, Lori A. Coburn, Bennett A. Landman, Yuankai Huo:
Cross-scale Multi-instance Learning for Pathological Image Diagnosis. CoRR abs/2304.00216 (2023) - [i93]Thomas Z. Li, John M. Still, Kaiwen Xu, Ho Hin Lee, Leon Y. Cai, Aravind R. Krishnan, Riqiang Gao, Mirza S. Khan, Sanja Antic, Michael N. Kammer, Kim L. Sandler, Fabien Maldonado, Bennett A. Landman, Thomas A. Lasko:
Longitudinal Multimodal Transformer Integrating Imaging and Latent Clinical Signatures From Routine EHRs for Pulmonary Nodule Classification. CoRR abs/2304.02836 (2023) - [i92]Kaiwen Xu, Aravind R. Krishnan, Thomas Z. Li, Yuankai Huo, Kim L. Sandler, Fabien Maldonado, Bennett A. Landman:
Zero-shot CT Field-of-view Completion with Unconditional Generative Diffusion Prior. CoRR abs/2304.03760 (2023) - [i91]Ruining Deng, Can Cui, Quan Liu, Tianyuan Yao, Lucas W. Remedios, Shunxing Bao, Bennett A. Landman, Lee E. Wheless, Lori A. Coburn, Keith T. Wilson, Yaohong Wang, Shilin Zhao, Agnes B. Fogo, Haichun Yang, Yucheng Tang, Yuankai Huo:
Segment Anything Model (SAM) for Digital Pathology: Assess Zero-shot Segmentation on Whole Slide Imaging. CoRR abs/2304.04155 (2023) - [i90]Lucas W. Remedios, Leon Y. Cai, Samuel W. Remedios, Karthik Ramadass, Aravind R. Krishnan, Ruining Deng, Can Cui, Shunxing Bao, Lori A. Coburn, Yuankai Huo, Bennett A. Landman:
Exploring shared memory architectures for end-to-end gigapixel deep learning. CoRR abs/2304.12149 (2023) - [i89]Yinchi Zhou, Ho Hin Lee, Yucheng Tang, Xin Yu, Qi Yang, Shunxing Bao, Jeffrey M. Spraggins, Yuankai Huo, Bennett A. Landman:
Multi-Contrast Computed Tomography Atlas of Healthy Pancreas. CoRR abs/2306.01853 (2023) - [i88]Tianyuan Yao, Francois Rheault, Leon Y. Cai, Vishwesh Nath, Zuhayr Asad, Nancy Newlin, Can Cui, Ruining Deng, Karthik Ramadass, Andrea T. Shafer, Susan M. Resnick, Kurt Schilling, Bennett A. Landman, Yuankai Huo:
Robust Fiber ODF Estimation Using Deep Constrained Spherical Deconvolution for Diffusion MRI. CoRR abs/2306.02900 (2023) - [i87]Can Cui, Yaohong Wang, Shunxing Bao, Yucheng Tang, Ruining Deng, Lucas W. Remedios, Zuhayr Asad, Joseph T. Roland, Ken S. Lau, Qi Liu, Lori A. Coburn, Keith T. Wilson, Bennett A. Landman, Yuankai Huo:
Feasibility of Universal Anomaly Detection without Knowing the Abnormality in Medical Images. CoRR abs/2307.00750 (2023) - [i86]Jeya Maria Jose Valanarasu, Yucheng Tang, Dong Yang, Ziyue Xu, Can Zhao, Wenqi Li, Vishal M. Patel, Bennett A. Landman, Daguang Xu, Yufan He, Vishwesh Nath:
Disruptive Autoencoders: Leveraging Low-level features for 3D Medical Image Pre-training. CoRR abs/2307.16896 (2023) - [i85]Shunxing Bao, Sichen Zhu, Vasantha L. Kolachala, Lucas W. Remedios, Yeonjoo Hwang, Yutong Sun, Ruining Deng, Can Cui, Yike Li, Jia Li, Joseph T. Roland, Qi Liu, Ken S. Lau, Subra Kugathasan, Peng Qiu, Keith T. Wilson, Lori A. Coburn, Bennett A. Landman, Yuankai Huo:
Cell Spatial Analysis in Crohn's Disease: Unveiling Local Cell Arrangement Pattern with Graph-based Signatures. CoRR abs/2308.10166 (2023) - [i84]Xin Yu, Yucheng Tang, Qi Yang, Ho Hin Lee, Shunxing Bao, Yuankai Huo, Bennett A. Landman:
Enhancing Hierarchical Transformers for Whole Brain Segmentation with Intracranial Measurements Integration. CoRR abs/2309.04071 (2023) - [i83]Xin Yu, Qi Yang, Yucheng Tang, Riqiang Gao, Shunxing Bao, Leon Y. Cai, Ho Hin Lee, Yuankai Huo, Ann Zenobia Moore, Luigi Ferrucci, Bennett A. Landman:
Deep conditional generative models for longitudinal single-slice abdominal computed tomography harmonization. CoRR abs/2309.09392 (2023) - [i82]Aravind R. Krishnan, Kaiwen Xu, Thomas Z. Li, Chenyu Gao, Lucas W. Remedios, Praitayini Kanakaraj, Ho Hin Lee, Shunxing Bao, Kim L. Sandler, Fabien Maldonado, Ivana Isgum, Bennett A. Landman:
Inter-vendor harmonization of Computed Tomography (CT) reconstruction kernels using unpaired image translation. CoRR abs/2309.12953 (2023) - [i81]Ho Hin Lee, Quan Liu, Qi Yang, Xin Yu, Shunxing Bao, Yuankai Huo, Bennett A. Landman:
DeformUX-Net: Exploring a 3D Foundation Backbone for Medical Image Segmentation with Depthwise Deformable Convolution. CoRR abs/2310.00199 (2023) - [i80]Chenyu Gao, Michael E. Kim, Ho Hin Lee, Qi Yang, Nazirah Mohd Khairi, Praitayini Kanakaraj, Nancy R. Newlin, Derek B. Archer, Angela L. Jefferson, Warren D. Taylor, Brian D. Boyd, Lori L. Beason-Held, Susan M. Resnick, The BIOCARD Study Team, Yuankai Huo, Katherine D. Van Schaik, Kurt G. Schilling, Daniel Moyer, Ivana Isgum, Bennett A. Landman:
Predicting Age from White Matter Diffusivity with Residual Learning. CoRR abs/2311.03500 (2023) - [i79]M. Jorge Cardoso, Julia Moosbauer, Tessa Sundaram Cook, Barbaros Selnur Erdal, Brad W. Genereaux, Vikash Gupta, Bennett A. Landman, Tiarna Lee, Parashkev Nachev, Elanchezhian Somasundaram, Ronald M. Summers, Khaled Younis, Sébastien Ourselin, Franz Pfister:
RAISE - Radiology AI Safety, an End-to-end lifecycle approach. CoRR abs/2311.14570 (2023) - 2022
- [j84]Chaitanya K. Baru, Michael Pozmantier, Ilkay Altintas, Stephen Baek, Jonathan Cohen, Laura E. Condon, Giulia Fanti, Raul Castro Fernandez, Ethan Jackson, Upmanu Lall, Bennett A. Landman, Hai Li, Claudia Marin, Beatriz Martínez-López, Dimitris N. Metaxas, Bradley D. Olsen, Grier P. Page, Yelda Turkan, Jingbo Zhang, Peng Zhang:
Enabling AI Innovation via Data and Model Sharing: An Overview of the Nsf Convergence Accelerator Track D. AI Mag. 43(1): 93-104 (2022) - [j83]Hyeonsoo Moon, Yuankai Huo, Richard G. Abramson, Richard Alan Peters, Albert Assad, Tamara K. Moyo, Michael R. Savona, Bennett A. Landman:
Corrigendum to "Acceleration of spleen segmentation with end-to-end deep learning method and automated pipeline" [Comput. Biol. Med. 107 (2019) 109-117]. Comput. Biol. Medicine 140: 107 (2022) - [j82]Ho Hin Lee, Yucheng Tang, Kaiwen Xu, Shunxing Bao, Agnes B. Fogo, Raymond Harris, Mark P. de Caestecker, Mattias P. Heinrich, Jeffrey M. Spraggins, Yuankai Huo, Bennett A. Landman:
Multi-contrast computed tomography healthy kidney atlas. Comput. Biol. Medicine 146: 105555 (2022) - [j81]Riqiang Gao, Thomas Z. Li, Yucheng Tang, Kaiwen Xu, Mirza S. Khan, Michael N. Kammer, Sanja L. Antic, Stephen Deppen, Yuankai Huo, Thomas A. Lasko, Kim L. Sandler, Fabien Maldonado, Bennett A. Landman:
Reducing uncertainty in cancer risk estimation for patients with indeterminate pulmonary nodules using an integrated deep learning model. Comput. Biol. Medicine 150: 106113 (2022) - [j80]Praitayini Kanakaraj, Karthik Ramadass, Shunxing Bao, Melissa A. Basford, Laura M. Jones, Ho Hin Lee, Kaiwen Xu, Kurt G. Schilling, John Jeffrey Carr, James G. Terry, Yuankai Huo, Kim L. Sandler, Allen T. Netwon, Bennett A. Landman:
Workflow Integration of Research AI Tools into a Hospital Radiology Rapid Prototyping Environment. J. Digit. Imaging 35(4): 1023-1033 (2022) - [j79]Shunxing Bao, Brian D. Boyd, Praitayini Kanakaraj, Karthik Ramadass, Francisco A. C. Meyer, Yuqian Liu, William E. Duett, Yuankai Huo, Ilwoo Lyu, David H. Zald, Seth A. Smith, Baxter P. Rogers, Bennett A. Landman:
Integrating the BIDS Neuroimaging Data Format and Workflow Optimization for Large-Scale Medical Image Analysis. J. Digit. Imaging 35(6): 1576-1589 (2022) - [j78]Ahmed M. Radwan, Stefan Sunaert, Kurt Schilling, Maxime Descoteaux, Bennett A. Landman, Mathieu Vandenbulcke, Tom Theys, Patrick Dupont, Louise Emsell:
An atlas of white matter anatomy, its variability, and reproducibility based on constrained spherical deconvolution of diffusion MRI. NeuroImage 254: 119029 (2022) - [j77]Chiara Maffei, Gabriel Girard, Kurt G. Schilling, Dogu Baran Aydogan, Nagesh Adluru, Andrey Zhylka, Ye Wu, Matteo Mancini, Andac Hamamci, Alessia Sarica, Achille Teillac, Steven H. Baete, Davood Karimi, Fang-Cheng Yeh, Mert E. Yildiz, Ali Gholipour, Yann Bihan-Poudec, Bassem Hiba, Andrea Quattrone, Aldo Quattrone, Tommy Boshkovski, Nikola Stikov, Pew-Thian Yap, Alberto De Luca, Josien P. W. Pluim, Alexander Leemans, Vivek Prabhakaran, Barbara B. Bendlin, Andrew L. Alexander, Bennett A. Landman, Erick Jorge Canales-Rodríguez, Muhamed Barakovic, Jonathan Rafael-Patino, Thomas Yu, Gaëtan Rensonnet, Simona Schiavi, Alessandro Daducci, Marco Pizzolato, Elda Fischi Gomez, Jean-Philippe Thiran, George Dai, Giorgia Grisot, Nikola Lazovski, Santi Puch, Marc Ramos, Paulo Rodrigues, Vesna Prckovska, Robert Jones, Julia Lehman, Suzanne N. Haber, Anastasia Yendiki:
Insights from the IronTract challenge: Optimal methods for mapping brain pathways from multi-shell diffusion MRI. NeuroImage 257: 119327 (2022) - [j76]Cailey I. Kerley, Shikha Chaganti, Tin Q. Nguyen, Camilo Bermudez, Laurie E. Cutting, Lori L. Beason-Held, Thomas A. Lasko, Bennett A. Landman:
pyPheWAS: A Phenome-Disease Association Tool for Electronic Medical Record Analysis. Neuroinformatics 20(2): 483-505 (2022) - [j75]Ethan H. Nguyen, Haichun Yang, Ruining Deng, Yuzhe Lu, Zheyu Zhu, Joseph T. Roland, Le Lu, Bennett A. Landman, Agnes B. Fogo, Yuankai Huo:
Circle Representation for Medical Object Detection. IEEE Trans. Medical Imaging 41(3): 746-754 (2022) - [c152]Shuang Zhou, Yuankai Huo, Shunxing Bao, Bennett A. Landman, Aniruddha Gokhale:
FedACA: An Adaptive Communication-Efficient Asynchronous Framework for Federated Learning. ACSOS 2022: 71-80 - [c151]Yucheng Tang, Dong Yang, Wenqi Li, Holger R. Roth, Bennett A. Landman, Daguang Xu, Vishwesh Nath, Ali Hatamizadeh:
Self-Supervised Pre-Training of Swin Transformers for 3D Medical Image Analysis. CVPR 2022: 20698-20708 - [c150]Can Cui, Zuhayr Asad, William F. Dean, Isabelle T. Smith, Christopher Madden, Shunxing Bao, Bennett A. Landman, Joseph T. Roland, Lori A. Coburn, Keith T. Wilson, Jeffrey P. Zwerner, Shilin Zhao, Lee E. Wheless, Yuankai Huo:
Multi-modal learning with missing data for cancer diagnosis using histopathological and genomic data. Computer-Aided Diagnosis 2022 - [c149]Ruining Deng, Can Cui, Lucas W. Remedios, Shunxing Bao, R. Michael Womick, Sophie Chiron, Jia Li, Joseph T. Roland, Ken S. Lau, Qi Liu, Keith T. Wilson, Yaohong Wang, Lori A. Coburn, Bennett A. Landman, Yuankai Huo:
Cross-Scale Attention Guided Multi-instance Learning for Crohn's Disease Diagnosis with Pathological Images. MMMI@MICCAI 2022: 24-33 - [c148]