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ORCIDDietmar Schomburg
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- affiliation: Braunschweig University of Technology, Germany
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Journal Articles
- 2021
[j41]Antje Chang
, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg:
BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49(Database-Issue): D498-D508 (2021)- 2020
- [j40]Rachel Drysdale, Charles E. Cook, Robert Petryszak, Vivienne Baillie Gerritsen, Mary Barlow, Elisabeth Gasteiger, Franziska Gruhl, Jürgen Haas, Jerry Lanfear, Rodrigo Lopez, Nicole Redaschi, Heinz Stockinger, Daniel Teixeira, Aravind Venkatesan, Alex Bateman, Alan J. Bridge, Guy Cochrane, Robert D. Finn, Frank Oliver Glöckner, Marc Hanauer, Thomas M. Keane, Andrew Leach, Luana Licata, Per Oksvold, Sandra E. Orchard, Christine A. Orengo, Helen E. Parkinson, Bengt Persson, Pablo Porras, Jordi Rambla, Ana Rath, Charlotte Rodwell, Ugis Sarkans, Dietmar Schomburg, Ian Sillitoe, J. Dylan Spalding, Mathias Uhlén, Sameer Velankar, Juan Antonio Vizcaíno, Kalle von Feilitzen, Christian von Mering, Andrew D. Yates, Niklas Blomberg, Christine Durinx, Johanna R. McEntyre:
The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences. Bioinform. 36(8): 2636-2642 (2020) - 2019
- [j39]Lisa Jeske, Sandra Placzek, Ida Schomburg, Antje Chang, Dietmar Schomburg:
BRENDA in 2019: a European ELIXIR core data resource. Nucleic Acids Res. 47(Database-Issue): D542-D549 (2019) - 2017
- [j38]Sandra Placzek, Ida Schomburg, Antje Chang, Lisa Jeske, Marcus Ulbrich, Jana Tillack, Dietmar Schomburg:
BRENDA in 2017: new perspectives and new tools in BRENDA. Nucleic Acids Res. 45(Database-Issue): D380-D388 (2017) - 2015
- [j37]Antje Chang, Ida Schomburg, Sandra Placzek, Lisa Jeske, Marcus Ulbrich, Mei Xiao, Christoph W. Sensen, Dietmar Schomburg:
BRENDA in 2015: exciting developments in its 25th year of existence. Nucleic Acids Res. 43(Database-Issue): 439-446 (2015) - 2014
- [j36]Zeeshan Ahmed, Saman Zeeshan, Claudia Huber, Michael Hensel, Dietmar Schomburg, Richard Münch, Eva Eylert, Wolfgang Eisenreich, Thomas Dandekar:
'Isotopo' a database application for facile analysis and management of mass isotopomer data. Database J. Biol. Databases Curation 2014 (2014) - 2013
- [j35]Zeeshan Ahmed, Saman Zeeshan, Claudia Huber, Michael Hensel, Dietmar Schomburg, Richard Münch, Wolfgang Eisenreich, Thomas Dandekar:
Software LS-MIDA for efficient mass isotopomer distribution analysis in metabolic modelling. BMC Bioinform. 14: 218 (2013) - [j34]S. Alexander Riemer, Rene Rex, Dietmar Schomburg:
A metabolite-centric view on flux distributions in genome-scale metabolic models. BMC Syst. Biol. 7: 33 (2013) - [j33]Ida Schomburg, Antje Chang, Sandra Placzek, Carola Söhngen, Michael Rother, Maren Lang, Cornelia Munaretto, Susanne Ulas, Michael Stelzer, Andreas Grote, Maurice Scheer, Dietmar Schomburg:
BRENDA in 2013: integrated reactions, kinetic data, enzyme function data, improved disease classification: new options and contents in BRENDA. Nucleic Acids Res. 41(Database-Issue): 764-772 (2013) - [j32]Rene Rex, Nelli Bill, Kerstin Schmidt-Hohagen, Dietmar Schomburg:
Swimming in Light: A Large-Scale Computational Analysis of the Metabolism of Dinoroseobacter shibae. PLoS Comput. Biol. 9(10) (2013) - 2011
- [j31]Carola Söhngen, Antje Chang, Dietmar Schomburg:
Development of an automatic Classification Scheme for Disease-related Enzyme Information. BMC Bioinform. 12: 329 (2011) - [j30]Susanne Quester, Dietmar Schomburg:
EnzymeDetector: an integrated enzyme function prediction tool and database. BMC Bioinform. 12: 376 (2011) - [j29]Marion Gremse, Antje Chang, Ida Schomburg, Andreas Grote, Maurice Scheer, Christian Ebeling, Dietmar Schomburg:
The BRENDA Tissue Ontology (BTO): the first all-integrating ontology of all organisms for enzyme sources. Nucleic Acids Res. 39(Database-Issue): 507-513 (2011) - [j28]Maurice Scheer, Andreas Grote, Antje Chang, Ida Schomburg, Cornelia Munaretto, Michael Rother, Carola Söhngen, Michael Stelzer, Juliane Thiele, Dietmar Schomburg:
BRENDA, the enzyme information system in 2011. Nucleic Acids Res. 39(Database-Issue): 670-676 (2011) - 2010
- [j27]Stephanie Heinen, Bernhard Thielen, Dietmar Schomburg:
KID - an algorithm for fast and efficient text mining used to automatically generate a database containing kinetic information of enzymes. BMC Bioinform. 11: 375 (2010) - [j26]Constantin Bannert, A. Welfle, C. aus dem Spring, Dietmar Schomburg:
BrEPS: a flexible and automatic protocol to compute enzyme-specific sequence profiles for functional annotation. BMC Bioinform. 11: 589 (2010) - [j25]Volker Egelhofer, Ida Schomburg, Dietmar Schomburg:
Automatic Assignment of EC Numbers. PLoS Comput. Biol. 6(1) (2010) - 2009
- [j24]Markus Leber, Volker Egelhofer, Ida Schomburg, Dietmar Schomburg:
Automatic assignment of reaction operators to enzymatic reactions. Bioinform. 25(23): 3135-3142 (2009) - [j23]Bernhard Thielen, Stephanie Heinen, Dietmar Schomburg:
mSpecs: a software tool for the administration and editing of mass spectral libraries in the field of metabolomics. BMC Bioinform. 10 (2009) - [j22]Isam Haddad, Karsten Hiller, Eliane Frimmersdorf, Beatrice Benkert, Dietmar Schomburg, Dieter Jahn:
An Emergent Self-Organizing Map Based Analysis Pipeline for Comparative Metabolome Studies. Silico Biol. 9(4): 163-178 (2009) - [j21]Antje Chang, Maurice Scheer, Andreas Grote, Ida Schomburg, Dietmar Schomburg:
BRENDA, AMENDA and FRENDA the enzyme information system: new content and tools in 2009. Nucleic Acids Res. 37(Database-Issue): 588-592 (2009) - 2007
- [j20]Philipp Heuser, Dietmar Schomburg:
Combination of scoring schemes for protein docking. BMC Bioinform. 8 (2007) - [j19]Claudia Choi, Claudia Hundertmark, Bernhard Thielen, Beatrice Benkert, Richard Münch, Max Schobert, Dietmar Schomburg, Dieter Jahn, Frank Klawonn:
Analysis of metabolome data by a maximum likelihood approach. BMC Syst. Biol. 1(S-1): P20 (2007) - [j18]Claudia Choi, Richard Münch, Boyke Bunk, Jens Barthelmes, Christian Ebeling, Dietmar Schomburg, Max Schobert, Dieter Jahn:
Combination of a data warehouse concept with web services for the establishment of the Pseudomonas systems biology database SYSTOMONAS. J. Integr. Bioinform. 4(1) (2007) - [j17]Jens Barthelmes, Christian Ebeling, Antje Chang, Ida Schomburg, Dietmar Schomburg:
BRENDA, AMENDA and FRENDA: the enzyme information system in 2007. Nucleic Acids Res. 35(Database-Issue): 511-514 (2007) - [j16]Claudia Choi, Richard Münch, Stefan Leupold, Johannes Klein, Inga Siegel, Bernhard Thielen, Beatrice Benkert, Martin Kucklick, Max Schobert, Jens Barthelmes, Christian Ebeling, Isam Haddad, Maurice Scheer, Andreas Grote, Karsten Hiller, Boyke Bunk, Kerstin Schreiber, Ida Retter, Dietmar Schomburg, Dieter Jahn:
SYSTOMONAS - an integrated database for systems biology analysis of Pseudomonas. Nucleic Acids Res. 35(Database-Issue): 533-537 (2007) - 2006
- [j15]Syed Asad Rahman, Dietmar Schomburg:
Observing local and global properties of metabolic pathways: "load points" and "choke points" in the metabolic networks. Bioinform. 22(14): 1767-1774 (2006) - [j14]Philipp Heuser, Dietmar Schomburg:
Optimised amino acid specific weighting factors for unbound protein docking. BMC Bioinform. 7: 344 (2006) - [j13]Vijaya Parthiban, M. Michael Gromiha, Dietmar Schomburg:
CUPSAT: prediction of protein stability upon point mutations. Nucleic Acids Res. 34(Web-Server-Issue): 239-242 (2006) - 2005
- [j12]Syed Asad Rahman, P. Advani, R. Schunk, Rainer Schrader, Dietmar Schomburg:
Metabolic pathway analysis web service (Pathway Hunter Tool at CUBIC). Bioinform. 21(7): 1189-1193 (2005) - [j11]Joachim Reichelt, Guido Dieterich, Marsel Kvesic, Dietmar Schomburg, Dirk W. Heinz:
BRAGI: linking and visualization of database information in a 3D viewer and modeling tool. Bioinform. 21(7): 1291-1293 (2005) - [j10]Oliver Hofmann, Dietmar Schomburg:
Concept-based annotation of enzyme classes. Bioinform. 21(9): 2059-2066 (2005) - [j9]Syed Asad Rahman, Pardha Saradhi Jonnalagadda, Jyothi Padiadpu, Kai Hartmann, Rainer Schrader, Dietmar Schomburg:
Metabolic Network Analysis: Implication And Application. BMC Bioinform. 6(S-3) (2005) - 2004
- [j8]Torsten Crass, Iris Antes, Rico Basekow, Peer Bork, Christian Buning, Maik Christensen, Holger Claussen, Christian Ebeling, Peter Ernst, Valérie Gailus-Durner, Karl-Heinz Glatting, Rolf Gohla, Frank Gößling, Korbinian Grote, Karsten R. Heidtke, Alexander Herrmann, Sean O'Keeffe, O. Kießlich, Sven Kolibal, Jan O. Korbel, Thomas Lengauer, Ines Liebich, Mark van der Linden, Hannes Luz, Kathrin Meissner, Christian von Mering, Heinz-Theodor Mevissen, Hans-Werner Mewes, Holger Michael, Martin Mokrejs, Tobias Müller, Heike Pospisil, Matthias Rarey, Jens G. Reich, Ralf Schneider, Dietmar Schomburg, Steffen Schulze-Kremer, Knut Schwarzer, Ingolf Sommer, Stephan Springstubbe, Sándor Suhai, Gnanasekaran Thoppae, Martin Vingron, Jens Warfsmann, Thomas Werner, Daniel Wetzler, Edgar Wingender, Ralf Zimmer:
The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources. Bioinform. 20(2): 268-270 (2004) - [j7]Ida Schomburg, Antje Chang, Christian Ebeling, Marion Gremse, Christian Heldt, Gregor Huhn, Dietmar Schomburg:
BRENDA, the enzyme database: updates and major new developments. Nucleic Acids Res. 32(Database-Issue): 431-433 (2004) - [j6]Astrid Fleischmann, Michael Darsow, Kirill Degtyarenko, Wolfgang Fleischmann, Sinéad Boyce, Kristian B. Axelsen, Amos Bairoch, Dietmar Schomburg, Keith F. Tipton, Rolf Apweiler:
IntEnz, the integrated relational enzyme database. Nucleic Acids Res. 32(Database-Issue): 434-437 (2004) - 2002
- [j5]Dietmar Schomburg, Martin Vingron:
Bioinformatics research and education in Germany. Silico Biol. 2(3): 169-171 (2002) - [j4]Ida Schomburg, Antje Chang, Dietmar Schomburg:
BRENDA, enzyme data and metabolic information. Nucleic Acids Res. 30(1): 47-49 (2002) - 2001
- [j3]Eva Bolten, Alexander Schliep, Sebastian Schneckener, Dietmar Schomburg, Rainer Schrader:
Clustering protein sequences-structure prediction by transitive homology. Bioinform. 17(10): 935-941 (2001) - [j2]Eva Bolten, Alexander Schliep, Sebastian Schneckener, Dietmar Schomburg, Rainer Schrader:
Strongly Connected Components can Predict Protein Structure. Electron. Notes Discret. Math. 8: 10-13 (2001) - 1998
- [j1]Michael Meyer, Gerd Wohlfahrt, Jörg Knäblein, Dietmar Schomburg:
Aspects of the mechanism of catalysis of glucose oxidase: A docking, molecular mechanics and quantum chemical study. J. Comput. Aided Mol. Des. 12(5): 425-440 (1998)
Conference and Workshop Papers
- 2018
- [c23]Rüdiger Busche, Henning Dannheim, Dietmar Schomburg:
DISBi: A Flexible Framework for Integrating Systems Biology Data. DILS 2018: 97-102 - 2014
- [c22]Jana Tillack, Melanie Bende, Michael Rother, Maurice Scheer, Susanne Ulas, Dietmar Schomburg:
Flexible database-assisted graphical representation of metabolic networks for model comparison and the display of experimental data. GCB 2014: 61-68 - 2012
- [c21]Dietmar Schomburg, Edgar Wingender:
Bioinformatik & Bioinformation: Braunschweig spielt eine führende Rolle. 40 Jahre Informatik @ Braunschweig 2012: 164-171 - 2007
- [c20]Frank Klawonn, Claudia Choi, Beatrice Benkert, Bernhard Thielen, Richard Münch, Max Schobert, Dietmar Schomburg, Dieter Jahn:
A Likelihood Ratio Test for Differential Metabolic Profiles in Multiple Intensity Measurements. KES (2) 2007: 485-492 - 2004
- [c19]Guido Dieterich, Marsel Kvesic, Dietmar Schomburg, Dirk W. Heinz, Joachim Reichelt:
Integrating public databases into an existing protein visualization and modeling program - BRAGI. German Conference on Bioinformatics 2004: 149-155 - 2002
- [c18]P. Pipenbacher, Alexander Schliep, Sebastian Schneckener, Alexander Schönhuth, Dietmar Schomburg, Rainer Schrader:
ProClust: improved clustering of protein sequences with an extended graph-based approach. ECCB 2002: 182-191 - 2001
- [c17]Dietmar Schomburg, Ida Schomburg, Antje Chang, Oliver Hofmann, Christian Ebeling, F. Ehrentreich:
BRENDA a resource for Enzyme data and metabolic pathway information. German Conference on Bioinformatics 2001: 222 - 1999
- [c16]Dietmar Schomburg:
Functional Genomics - an integrated approach to the biosiences. German Conference on Bioinformatics 1999: 80 - [c15]Eva Bolten, Alexander Schliep, Sebastian Schneckener, Dietmar Schomburg, Rainer Schrader:
Clustering Protein Sequences ? Structure Prediction by Transitive Homology. German Conference on Bioinformatics 1999: 181 - [c14]Oliver Leven, Dietmar Schomburg:
Prediction of Protein Thermostability. German Conference on Bioinformatics 1999: 210 - [c13]Dietmar Schomburg, Ida Schomburg, Antje Chang, C. Bänsch:
BRENDA the Information System for Enzymes and metabolic Information. German Conference on Bioinformatics 1999: 226-227 - [c12]Olav Zimmermann, Peter Krämer, Dietmar Schomburg:
Pre- and Postfiltering in Protein Docking. German Conference on Bioinformatics 1999: 231-232 - 1998
- [c11]Peter Krämer, Dietmar Schomburg:
Use of local intermolecular interactions for the prediction of protein/protein binding sites. German Conference on Bioinformatics 1998 - [c10]Oliver Leven, Dietmar Schomburg:
Prediction of Protein Thermostability. German Conference on Bioinformatics 1998 - [c9]Dietmar Schomburg:
BRENDA, Enzyme Data for Metabolic pathways. German Conference on Bioinformatics 1998 - [c8]Olav Zimmermann, Oliver Martin, Dietmar Schomburg:
Geometric Docking of Transmembrane Structures. German Conference on Bioinformatics 1998 - 1997
- [c7]Sebastian Schneckener, Dietmar Schomburg:
Improvement of sequence-structure alignment quality by an empirical energy function. German Conference on Bioinformatics 1997: 179 - 1996
- [c6]Uta F. Lessel, Dietmar Schomburg:
Knowledge-Based Loop Prediction. German Conference on Bioinformatics 1996: 260 - [c5]Michael Meyer, Gerd Wohlfahrt, Dietmar Schomburg:
Aspects of the Mechanism of Glucose Oxidase. German Conference on Bioinformatics 1996: 276-277 - [c4]Michael Meyer, Peter Wilson, Dietmar Schomburg:
Protein Docking with Correlation Methods. German Conference on Bioinformatics 1996: 278-279 - [c3]Sebastian Schneckener, Dietmar Schomburg:
Optimal Gap Penalties and Similarity Matrices for Sequence Alignment. German Conference on Bioinformatics 1996: 292-293 - 1995
- [c2]Friedrich Ackermann, Grit Herrmann, Franz Kummert, Stefan Posch, Gerhard Sagerer, Dietmar Schomburg:
Protein Docking: Combining Symbolic Descriptions of Molecular Surfaces and Grid-Based Scoring Functions. ISMB 1995: 3-11 - 1993
- [c1]Dietmar Schomburg:
Computer Aided Protein Design: Methods and Applications. Informatik in den Biowissenschaften 1993: 11-20
Editorship
- 2010
- [e2]Dietmar Schomburg, Andreas Grote:
German Conference on Bioinformatics 2010, September 20-22, 2010, Technische Universität Carolo Wilhelmina zu Braunschweig, Germany. LNI P-173, GI 2010, ISBN 978-3-88579-267-3 [contents] - 1997
- [e1]Ralf Hofestädt, Thomas Lengauer, Markus Löffler, Dietmar Schomburg:
Bioinformatics, German Conference on Bioinformatics, Leipzig, Germany, September 30 - October 2, 1996, Selected Papers. Lecture Notes in Computer Science 1278, Springer 1997, ISBN 3-540-63370-7 [contents]
Coauthor Index
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