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ORCIDWeichuan Yu
余維川
Person information
- affiliation: Hong Kong University of Science and Technology
- unicode name: 余維川
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Books and Theses
- 2000
[b1]Weichuan Yu:
Local orientation analysis in images and image sequences using steerable filters. University of Kiel, Germany, Shaker 2000, ISBN 978-3-8265-8442-8, pp. 1-117
Journal Articles
- 2023
- [j52]Chen Zhou
, Shuaijian Dai, Shengzhi Lai, Yuanqiao Lin, Xuechen Zhang, Ning Li, Weichuan Yu:
ECL 3.0: a sensitive peptide identification tool for cross-linking mass spectrometry data analysis. BMC Bioinform. 24(1): 351 (2023) - [j51]Xuechen Zhang, Isaac Cheng, Shaojun Liu, Chenrui Li, Jing-Hao Xue, Lai-Shan Tam, Weichuan Yu:
Automatic 3D joint erosion detection for the diagnosis and monitoring of rheumatoid arthritis using hand HR-pQCT images. Comput. Medical Imaging Graph. 106: 102200 (2023) - 2021
- [j50]Jiaan Dai, Fengchao Yu, Chen Zhou, Weichuan Yu:
Understanding the Limit of Open Search in the Identification of Peptides With Post-translational Modifications - A Simulation-Based Study. IEEE ACM Trans. Comput. Biol. Bioinform. 18(6): 2884-2890 (2021) - 2020
- [j49]Yuli Gao, Guohui Chuai, Weichuan Yu, Shen Qu, Qi Liu:
Data imbalance in CRISPR off-target prediction. Briefings Bioinform. 21(4): 1448-1454 (2020) - 2019
- [j48]Jiaan Dai, Wei Jiang, Fengchao Yu, Weichuan Yu:
Xolik: finding cross-linked peptides with maximum paired scores in linear time. Bioinform. 35(2): 251-257 (2019) - 2018
- [j47]Danny Kit-Sang Yip, Landon L. Chan, Iris K. Pang, Wei Jiang, Nelson L. S. Tang, Weichuan Yu, Kevin Y. Yip:
A network approach to exploring the functional basis of gene-gene epistatic interactions in disease susceptibility. Bioinform. 34(10): 1741-1749 (2018) - 2017
- [j46]Wei Jiang, Jing-Hao Xue, Weichuan Yu:
What is the probability of replicating a statistically significant association in genome-wide association studies? Briefings Bioinform. 18(6): 928-939 (2017) - [j45]Wei Jiang, Weichuan Yu:
Controlling the joint local false discovery rate is more powerful than meta-analysis methods in joint analysis of summary statistics from multiple genome-wide association studies. Bioinform. 33(4): 500-507 (2017) - 2016
- [j44]Fengchao Yu, Ning Li, Weichuan Yu:
ECL: an exhaustive search tool for the identification of cross-linked peptides using whole database. BMC Bioinform. 17: 217 (2016) - [j43]Wei Jiang, Weichuan Yu:
Power estimation and sample size determination for replication studies of genome-wide association studies. BMC Genom. 17(S-1): 3 (2016) - [j42]Tianzhu Liang, Ling Sing Yung, Weichuan Yu:
Erratum to "On Feature Motion Decorrelation in Ultrasound Speckle Tracking". IEEE Trans. Medical Imaging 35(2): 712 (2016) - 2015
- [j41]Guangyuan Yang, Wei Jiang, Qiang Yang, Weichuan Yu:
PBOOST: a GPU-based tool for parallel permutation tests in genome-wide association studies. Bioinform. 31(9): 1460-1462 (2015) - 2014
- [j40]Xiaowei Zhou, Jiming Liu, Xiang Wan, Weichuan Yu:
Piecewise-constant and low-rank approximation for identification of recurrent copy number variations. Bioinform. 30(14): 1943-1949 (2014) - [j39]Xiaowei Zhou, Can Yang, Hongyu Zhao, Weichuan Yu:
Low-Rank Modeling and Its Applications in Image Analysis. ACM Comput. Surv. 47(2): 36:1-36:33 (2014) - 2013
- [j38]Xiaowei Zhou, Can Yang, Weichuan Yu:
Moving Object Detection by Detecting Contiguous Outliers in the Low-Rank Representation. IEEE Trans. Pattern Anal. Mach. Intell. 35(3): 597-610 (2013) - [j37]Xiang Wan, Can Yang, Qiang Yang, Hongyu Zhao, Weichuan Yu:
HapBoost: A Fast Approach to Boosting Haplotype Association Analyses in Genome-Wide Association Studies. IEEE ACM Trans. Comput. Biol. Bioinform. 10(1): 207-212 (2013) - [j36]Xiaowei Zhou, Can Yang, Xiang Wan, Hongyu Zhao, Weichuan Yu:
Multisample aCGH Data Analysis via Total Variation and Spectral Regularization. IEEE ACM Trans. Comput. Biol. Bioinform. 10(1): 230-235 (2013) - [j35]Chao Yang, Zengyou He, Weichuan Yu:
A Combinatorial Perspective of the Protein Inference Problem. IEEE ACM Trans. Comput. Biol. Bioinform. 10(6): 1542-1547 (2013) - [j34]Tianzhu Liang, Ling Sing Yung, Weichuan Yu:
On Feature Motion Decorrelation in Ultrasound Speckle Tracking. IEEE Trans. Medical Imaging 32(2): 435-448 (2013) - 2012
- [j33]Ting Huang, Jingjing Wang, Weichuan Yu, Zengyou He:
Protein inference: a review. Briefings Bioinform. 13(5): 586-614 (2012) - [j32]Xiang Wan, Can Yang, Weichuan Yu:
Comments on 'An empirical comparison of several recent epistatic interaction detection methods'. Bioinform. 28(1): 145-146 (2012) - [j31]Weichuan Yu, Zheng-Hua Tan, Yi Wan:
Guest Editors' Introduction to the Special Issue on "New Trends in Signal Processing and Biomedical Engineering". Comput. Electr. Eng. 38(1): 1-2 (2012) - [j30]Chao Yang, Zengyou He, Can Yang, Weichuan Yu:
Peptide Reranking with Protein-Peptide Correspondence and Precursor Peak Intensity Information. IEEE ACM Trans. Comput. Biol. Bioinform. 9(4): 1212-1219 (2012) - 2011
- [j29]Ling Sing Yung, Can Yang, Xiang Wan, Weichuan Yu:
GBOOST: a GPU-based tool for detecting gene-gene interactions in genome-wide case control studies. Bioinform. 27(9): 1309-1310 (2011) - [j28]Can Yang, Xiaowei Zhou, Xiang Wan, Qiang Yang, Hong Xue, Weichuan Yu:
Identifying disease-associated SNP clusters via contiguous outlier detection. Bioinform. 27(18): 2578-2585 (2011) - [j27]Can Yang, Xiang Wan, Qiang Yang, Hong Xue, Nelson L. S. Tang, Weichuan Yu:
A hidden two-locus disease association pattern in genome-wide association studies. BMC Bioinform. 12: 156 (2011) - [j26]Zengyou He, Hongyu Zhao, Weichuan Yu:
Score regularization for peptide identification. BMC Bioinform. 12(S-1): S2 (2011) - [j25]Zengyou He, Can Yang, Guangyu Guo, Ning Li, Weichuan Yu:
Motif-All: discovering all phosphorylation motifs. BMC Bioinform. 12(S-1): S22 (2011) - [j24]Can Yang, Xiang Wan, Zengyou He, Qiang Yang, Hong Xue, Weichuan Yu:
The choice of null distributions for detecting gene-gene interactions in genome-wide association studies. BMC Bioinform. 12(S-1): S26 (2011) - [j23]Zengyou He, Can Yang, Weichuan Yu:
A Partial Set Covering Model for Protein Mixture Identification Using Mass Spectrometry Data. IEEE ACM Trans. Comput. Biol. Bioinform. 8(2): 368-380 (2011) - 2010
- [j22]Xiang Wan, Can Yang, Qiang Yang, Hong Xue, Nelson L. S. Tang, Weichuan Yu:
Predictive rule inference for epistatic interaction detection in genome-wide association studies. Bioinform. 26(1): 30-37 (2010) - [j21]Xiang Wan, Can Yang, Qiang Yang, Hong Xue, Nelson L. S. Tang, Weichuan Yu:
Detecting two-locus associations allowing for interactions in genome-wide association studies. Bioinform. 26(20): 2517-2525 (2010) - [j20]Can Yang, Xiang Wan, Qiang Yang, Hong Xue, Weichuan Yu:
Identifying main effects and epistatic interactions from large-scale SNP data via adaptive group Lasso. BMC Bioinform. 11(S-1): 18 (2010) - [j19]Zengyou He, Weichuan Yu:
Stable feature selection for biomarker discovery. Comput. Biol. Chem. 34(4): 215-225 (2010) - [j18]Zengyou He, Chao Yang, Can Yang, Robert Z. Qi, Jason Po-Ming Tam, Weichuan Yu:
Optimization-Based Peptide Mass Fingerprinting for Protein Mixture Identification. J. Comput. Biol. 17(3): 221-235 (2010) - 2009
- [j17]Can Yang, Zengyou He, Xiang Wan, Qiang Yang, Hong Xue, Weichuan Yu:
SNPHarvester: a filtering-based approach for detecting epistatic interactions in genome-wide association studies. Bioinform. 25(4): 504-511 (2009) - [j16]Zengyou He, Weichuan Yu:
Improving peptide identification with single-stage mass spectrum peaks. Bioinform. 25(22): 2969-2974 (2009) - [j15]Xiang Wan, Can Yang, Qiang Yang, Hong Xue, Nelson L. S. Tang, Weichuan Yu:
MegaSNPHunter: a learning approach to detect disease predisposition SNPs and high level interactions in genome wide association study. BMC Bioinform. 10 (2009) - [j14]Qian Xu, Derek Hao Hu, Hong Xue, Weichuan Yu, Qiang Yang:
Semi-supervised protein subcellular localization. BMC Bioinform. 10(S-1) (2009) - [j13]Chao Yang, Zengyou He, Weichuan Yu:
Comparison of public peak detection algorithms for MALDI mass spectrometry data analysis. BMC Bioinform. 10 (2009) - 2008
- [j12]Zengyou He, Can Yang, Weichuan Yu:
Peak bagging for peptide mass fingerprinting. Bioinform. 24(10): 1293-1299 (2008) - [j11]Junfeng Liu, Hongyu Zhao, Jun Tan, Dajie Luo, Weichuan Yu, E. James Harner, Weichung Joe Shih:
Is Subcellular Localization Informative for Modeling Protein-Protein Interaction Signal? J. Electr. Comput. Eng. 2008 (2008) - 2007
- [j10]Weichuan Yu, Junfeng Liu, Chris Colangelo, Erol E. Gulcicek, Hongyu Zhao:
A new protocol of analyzing isotope-coded affinity tag data from high-resolution LC-MS spectrometry. Comput. Biol. Chem. 31(3): 215-221 (2007) - 2006
- [j9]Weichuan Yu, Baolin Wu, Ning Lin, Kathy Stone, Kenneth R. Williams, Hongyu Zhao:
Detecting and aligning peaks in mass spectrometry data with applications to MALDI. Comput. Biol. Chem. 30(1): 27-38 (2006) - [j8]Weichuan Yu, Ping Yan, Albert J. Sinusas, Karl Thiele, James S. Duncan:
Towards pointwise motion tracking in echocardiographic image sequences - Comparing the reliability of different features for speckle tracking. Medical Image Anal. 10(4): 495-508 (2006) - [j7]Weichuan Yu, Xiaoye Li, Junfeng Liu, Baolin Wu, Kenneth R. Williams, Hongyu Zhao:
Multiple Peak Alignment in Sequential Data Analysis: A Scale-Space-Based Approach. IEEE ACM Trans. Comput. Biol. Bioinform. 3(3): 208-219 (2006) - 2005
- [j6]Weichuan Yu, Gerald Sommer, Konstantinos Daniilidis, James S. Duncan:
Using skew Gabor filter in source signal separation and local spectral orientation analysis. Image Vis. Comput. 23(4): 377-392 (2005) - 2003
- [j5]Weichuan Yu, Gerald Sommer, Kostas Daniilidis:
Multiple motion analysis: in spatial or in spectral domain? Comput. Vis. Image Underst. 90(2): 129-152 (2003) - [j4]Weichuan Yu, Gerald Sommer, Kostas Daniilidis:
Three dimensional orientation signatures with conic kernel filtering for multiple motion analysis. Image Vis. Comput. 21(5): 447-458 (2003) - [j3]Ning Lin, Weichuan Yu, James S. Duncan:
Combinative multi-scale level set framework for echocardiographic image segmentation. Medical Image Anal. 7(4): 529-537 (2003) - 2002
- [j2]Weichuan Yu, Gerald Sommer, Steven S. Beauchemin, Konstantinos Daniilidis:
Oriented Structure of the Occlusion Distortion: Is It Reliable? IEEE Trans. Pattern Anal. Mach. Intell. 24(9): 1286-1290 (2002) - 2001
- [j1]Weichuan Yu, Konstantinos Daniilidis, Gerald Sommer:
Approximate orientation steerability based on angular Gaussians. IEEE Trans. Image Process. 10(2): 193-205 (2001)
Conference and Workshop Papers
- 2023
- [c24]Shengzhi Lai, Ning Li, Weichuan Yu:
Combining Tags of Various Lengths Benefits Peptide Identification in Bottom-up Proteomics. BIBM 2023: 241-246 - 2016
- [c23]Chen Zhang, Tianzhu Liang, Philip K. T. Mok, Weichuan Yu:
FPGA implementation of the coupled filtering method. BIBM 2016: 435-442 - [c22]Meng Wang, Wei Jiang, Ronald Ching Wan Ma, Weichuan Yu:
GBOOST 2.0: A GPU-based tool for detecting gene-gene interactions with covariates adjustment in genome-wide association studies. BIBM 2016: 1437 - 2013
- [c21]Xiaowei Zhou, Xiaojie Huang, James S. Duncan, Weichuan Yu:
Active Contours with Group Similarity. CVPR 2013: 2969-2976 - 2012
- [c20]Xiaowei Zhou, Can Yang, Weichuan Yu:
Automatic mitral leaflet tracking in echocardiography by outlier detection in the low-rank representation. CVPR 2012: 972-979 - 2011
- [c19]Chao Yang, Weichuan Yu:
A brief review of signal processing issues in mass spectrometry-based proteomics studies. ACSCC 2011: 1036-1040 - 2010
- [c18]Ling Sing Yung, Chao Yang, Mohammed Dakna, Harald Mischak, Weichuan Yu:
SyncPro : A synchronized visualization tool for differential analysis of proteomics data sets. BIBM Workshops 2010: 95-100 - [c17]Tianzhu Liang, Weichuan Yu:
A coupled filtering method to solve feature-motion decorrelation in speckle tracking. ISBI 2010: 312-315 - [c16]Xiaowei Zhou, Tianzhu Liang, Weichuan Yu:
Accurate segmentation of ultrasound images using the motion cue. ISBI 2010: 332-335 - 2009
- [c15]Zengyou He, Chao Yang, Can Yang, Robert Z. Qi, Jason Po-Ming Tam, Weichuan Yu:
Optimization-Based Peptide Mass Fingerprinting for Protein Mixture Identification. RECOMB 2009: 16-30 - 2005
- [c14]Weichuan Yu, Xiaoye Li, Hongyu Zhao:
Aligning Peaks Across Multiple Mass Spectrometry Data Sets Using A Scale-Space Based Approach. CSB Workshops 2005: 126-127 - 2004
- [c13]Weichuan Yu, Gerald Sommer, Kostas Daniilidis:
Using Skew Gabor Filter in Source Signal Separation and Local Spectral Multi-Orientation Analysis. CVPR (1) 2004: 462-469 - [c12]Weichuan Yu, Ping Yan, Albert J. Sinusas, Karl Thiele, James S. Duncan:
Pointwise Motion Tracking in Echocardiographic Images. CVPR (1) 2004: 676-683 - [c11]Weichuan Yu, James S. Duncan:
The Choice of Tracking Feature In Ultrasound-Based Strain Imaging Analysis. ISBI 2004: 304-307 - 2003
- [c10]Weichuan Yu, Ning Lin, Ping Yan, Kailasnath Purushothaman, Albert J. Sinusas, Karl Thiele, James S. Duncan:
Motion Analysis of 3D Ultrasound Texture Patterns. FIMH 2003: 252-261 - 2002
- [c9]Ning Lin, Weichuan Yu, James S. Duncan:
Combinative Multi-scale Level Set Framework for Echocardiographic Image Segmentation. MICCAI (1) 2002: 682-689 - 2001
- [c8]Weichuan Yu, Gerald Sommer, Kostas Daniilidis:
3D-Orientation Signatures with Conic Kernel Filtering for Multiple Motion Analysis. CVPR (1) 2001: 299-306 - [c7]Weichuan Yu, Gerald Sommer, Konstantinos Daniilidis:
Skewness of Gabor Wavelets and Source Signal Separation. WAA 2001: 269-283 - 2000
- [c6]Weichuan Yu, Konstantinos Daniilidis, Gerald Sommer:
A New 3D Orientation Steerable Filter. DAGM-Symposium 2000: 203-212 - [c5]Weichuan Yu, Konstantinos Daniilidis, Gerald Sommer:
Eliminating Outliers in Motion Occlusion Analysis. DAGM-Symposium 2000: 373-380 - 1999
- [c4]Weichuan Yu, Gerald Sommer, Steven S. Beauchemin, Konstantinos Daniilidis:
Detection and Characterization of Multiple Motion Points. CVPR 1999: 1171-1177 - 1998
- [c3]Weichuan Yu, Konstantinos Daniilidis, Gerald Sommer:
Rotated Wedge Averaging Method for Junction Classification. CVPR 1998: 390-395 - [c2]Weichuan Yu, Konstantinos Daniilidis, Gerald Sommer:
Junction Characterization Using Polar Pyramid. DAGM-Symposium 1998: 69-76 - [c1]Weichuan Yu, Konstantinos Daniilidis, Gerald Sommer:
Low-Cost Junction Characterization using Polar Averaging Filters. ICIP (3) 1998: 41-44
Informal and Other Publications
- 2014
- [i4]Xiaowei Zhou, Can Yang, Hongyu Zhao, Weichuan Yu:
Low-Rank Modeling and Its Applications in Image Analysis. CoRR abs/1401.3409 (2014) - 2011
- [i3]Xiaowei Zhou, Can Yang, Weichuan Yu:
Moving Object Detection by Detecting Contiguous Outliers in the Low-Rank Representation. CoRR abs/1109.0882 (2011) - 2010
- [i2]Zengyou He, Weichuan Yu:
Stable Feature Selection for Biomarker Discovery. CoRR abs/1001.0887 (2010) - [i1]Xiang Wan, Can Yang, Qiang Yang, Hong Xue, Xiaodan Fan, Nelson L. S. Tang, Weichuan Yu:
BOOST: A fast approach to detecting gene-gene interactions in genome-wide case-control studies. CoRR abs/1001.5130 (2010)
Coauthor Index
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