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ORCIDComputational Biology and Chemistry, Volume 34
Volume 34, Number 1, February 2010
- William R. Taylor, Zoe Katsimitsoulia:
A soft collision detection algorithm for simple Brownian dynamics. 1-10 - Jeyaraman Srividhya, Márcio A. Mourão, Edmund J. Crampin, Santiago Schnell
:
Enzyme catalyzed reactions: From experiment to computational mechanism reconstruction. 11-18 - Srboljub M. Mijailovich, Xiaochuan Li, Juan C. del Álamo, R. Hugh Griffiths, Vojislav Kecman, Michael A. Geeves:
Resolution and uniqueness of estimated parameters of a model of thin filament regulation in solution. 19-33 - Kateryna Mishchenko, Lars Rönnegård, Sverker Holmgren, Volodymyr Mishchenko:
Assessing a multiple QTL search using the variance component model. 34-41 - Alexander Zawaira, Marco Gallotta, Natasha Beeton-Kempen, Lauren Coulson, Patrick C. Marais, Michelle Kuttel, Jonathan Blackburn:
Exhaustive computational search of ionic-charge clusters that mediate interactions between mammalian cytochrome P450 (CYP) and P450-oxidoreductase (POR) proteins. 42-52 - Takuyo Aita, Koichi Nishigaki, Yuzuru Husimi:
Toward the fast blind docking of a peptide to a target protein by using a four-body statistical pseudo-potential. 53-62
- DongMing Tang, Qingxin Zhu, Fan Yang:
A Poisson-based adaptive affinity propagation clustering for SAGE data. 63-70
Volume 34, Number 2, April 2010
- Zoe Katsimitsoulia, William R. Taylor:
A hierarchic collision detection algorithm for simple Brownian dynamics. 71-79 - Hervé Seligmann:
The ambush hypothesis at the whole-organism level: Off frame, 'hidden' stops in vertebrate mitochondrial genes increase developmental stability. 80-85 - Elsje Pienaar, Aaron M. Fluitt, Scott E. Whitney, Alison G. Freifeld, Hendrik J. Viljoen:
A model of tuberculosis transmission and intervention strategies in an urban residential area. 86-96 - Jacob D. Durrant, James Andrew McCammon:
Potential drug-like inhibitors of Group 1 influenza neuraminidase identified through computer-aided drug design. 97-105 - Jun Hu, Huimin Li, Jing Zhang:
Analysis of transcriptional synergy between upstream regions and introns in ribosomal protein genes of yeast. 106-114
- Piotr Waligórski, Maciej Szaleniec:
Prediction of white cabbage (Brassica oleracea var. capitata) self-incompatibility based on neural network and discriminant analysis of complex electrophoretic patterns. 115-121 - Christian J. Michel, Giuseppe Pirillo:
Identification of all trinucleotide circular codes. 122-125 - R. Sabarinathan, Raunak Basu, Krishna Sekar:
ProSTRIP: A method to find similar structural repeats in three-dimensional protein structures. 126-130 - In-Seon Jeong, Kyoung-Wook Park, Seung-Ho Kang, Hyeong-Seok Lim:
An efficient similarity search based on indexing in large DNA databases. 131-136
Volume 34, Number 3, June 2010
- Chenhua Huang, Xiangbo Yang, Zhihong He:
Protein folding simulations of 2D HP model by the genetic algorithm based on optimal secondary structures. 137-142 - Andre S. Ribeiro, Antti Häkkinen, Shannon Healy, Olli Yli-Harja:
Dynamical effects of transcriptional pause-prone sites. 143-148 - Kang Ning:
Deposition and extension approach to find longest common subsequence for thousands of long sequences. 149-157 - Christian Meesters, Bruno Pairet, Anja Rabenhorst, Heinz Decker, Elmar Jaenicke:
Monte Carlo-based rigid body modelling of large protein complexes against small angle scattering data. 158-164 - Li Guo, Zuhong Lu:
Global expression analysis of miRNA gene cluster and family based on isomiRs from deep sequencing data. 165-171 - Hyun Joo, Xiaotao Qu, Rosemarie Swanson, C. Michael McCallum, Jerry W. Tsai:
Fine grained sampling of residue characteristics using molecular dynamics simulation. 172-183 - Francisco Javier Burguillo Muñoz, Javier Martin, Inmaculada Barrera, William G. Bardsley:
Meta-analysis of microarray data: The case of imatinib resistance in chronic myelogenous leukemia. 184-192 - Sebastian Schneckener, Linus Görlitz, Heidrun Ellinger-Ziegelbauer, Hans-Jürgen Ahr, Andreas Schuppert:
An elastic network model to identify characteristic stress response genes. 193-202 - Olfa Siala, Ahmed Rebai, Faouzi Baklouti, Faiza Fakhfakh:
Subtle discrepancies of SF2/ASF ESE sequence motif among human tissues: A computational approach. 203-209
- Nalin C. W. Goonesekere, Krysten Shipely, Kevin O'Connor:
The challenge of annotating protein sequences: The tale of eight domains of unknown function in Pfam. 210-214
Volume 34, Number 4, August 2010
- Zengyou He, Weichuan Yu:
Stable feature selection for biomarker discovery. 215-225
- Bashistha Kumar Kanth, Kwangkyoung Liou, Jae Kyung Sohng:
Homology modeling, binding site identification and docking in flavone hydroxylase CYP105P2 in Streptomyces peucetius ATCC 27952. 226-231 - Sheng Lin, William K. C. Cheung, Shen Chen, Gang Lu, Zifeng Wang, Dan Xie, Kui Li, Marie C. M. Lin, Hsiang-fu Kung:
Computational identification and characterization of primate-specific microRNAs in human genome. 232-241
- Irina V. Zorkoltseva, Yurii S. Aulchenko, Cornelia M. van Duijn, Tatiana I. Axenovich:
Ped_Outlier software for automatic identification of within-family outliers. 242-243 - Emmanuel Martinez, Mario Moises Alvarez, Victor Trevino:
Compact cancer biomarkers discovery using a swarm intelligence feature selection algorithm. 244-250 - Yanming Zou, Chun Hou:
Systematic analysis of an amidase domain CHAP in 12 Staphylococcus aureus genomes and 44 staphylococcal phage genomes. 251-257
Volume 34, Numbers 5-6, December 2010
- Sophie Lèbre, Christian J. Michel:
A stochastic evolution model for residue Insertion-Deletion Independent from Substitution. 259-267 - Omodele Ibraheem, Christiaan E. J. Botha, Graeme Bradley:
In silico analysis of cis-acting regulatory elements in 5' regulatory regions of sucrose transporter gene families in rice (Oryza sativa Japonica) and Arabidopsis thaliana. 268-283 - Sudhakar Sahoo, Andreas Alexander Albrecht:
Ranking of microRNA target prediction scores by Pareto front analysis. 284-292
- Efendi N. Nasibov, Sezin Tunaboylu:
Classification of splice-junction sequences via weighted position specific scoring approach. 293-299 - Piotr Plonski, Jan P. Radomski:
Quick path finding - Quick algorithmic solution for unambiguous labeling of phylogenetic tree nodes. 300-307 - Ming Chen, Yijun Meng, Haibin Gu, Dijun Chen:
Functional characterization of plant small RNAs based on next-generation sequencing data. 308-312 - Ping Gong, Fuliang Xie, Baohong Zhang, Edward J. Perkins:
In silico identification of conserved microRNAs and their target transcripts from expressed sequence tags of three earthworm species. 313-319 - Sitanshu Sekhar Sahu, Ganapati Panda:
A novel feature representation method based on Chou's pseudo amino acid composition for protein structural class prediction. 320-327 - Daniel Reker, Stefan Katzenbeisser, Kay Hamacher:
Computation of mutual information from Hidden Markov Models. 328-333
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