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ORCIDComputational Biology and Chemistry, Volume 31
Volume 31, Number 1, February 2007
- Andrea Sackmann, Dorota Formanowicz
, Piotr Formanowicz, Ina Koch, Jacek Blazewicz:
An analysis of the Petri net based model of the human body iron homeostasis process. 1-10 - Howard A. Levine, Marit Nilsen-Hamilton:
A mathematical analysis of SELEX. 11-35 - Christian J. Michel:
Codon phylogenetic distance. 36-43 - Majid Kazemian, Behzad Moshiri, Hamid Nikbakht, Caro Lucas:
A new expertness index for assessment of secondary structure prediction engines. 44-47 - Zhenqiang Su, Huixiao Hong, Roger Perkins, Xueguang Shao, Wensheng Cai, Weida Tong:
Consensus analysis of multiple classifiers using non-repetitive variables: Diagnostic application to microarray gene expression data. 48-56 - Andrey A. Toropov, Emilio Benfenati:
SMILES as an alternative to the graph in QSAR modelling of bee toxicity. 57-60
- Xiaofeng Ji, Hanlin Chen, Yi Xiao:
Hidden symmetries in the primary sequences of beta-barrel family. 61-63
Volume 31, Number 2, April 2007
- Fang Liu, Baolin Wu:
Multi-group cancer outlier differential gene expression detection. 65-71 - D. Yu. Mordvintsev, Ya. L. Polyak, D. A. Kuzmin, Olga V. Levtsova, Ye. V. Tourleigh, Yu. N. Utkin, Konstantin V. Shaitan, Victor I. Tsetlin:
Computer modeling of binding of diverse weak toxins to nicotinic acetylcholine receptors. 72-81 - N. S. Gomathi, H. Sameer, Vanaja Kumar, S. Balaji, V. N. Azger Dustackeer, P. R. Narayanan:
In silico analysis of mycobacteriophage Che12 genome: Characterization of genes required to lysogenise Mycobacterium tuberculosis. 82-91 - Raad Z. Gharaibeh, Anthony Fodor, Cynthia Gibas:
Software Note: Using probe secondary structure information to enhance Affymetrix GeneChip background estimates. 92-98 - H. H. Haeri, Sayed Majid Hashemianzadeh, Majid Monajjemi:
A kinetic Monte Carlo simulation study of inositol 1, 4, 5-trisphosphate receptor (IP3R) calcium release channel. 99-109 - Jack Xiao-Dong Yang, Roderick V. N. Melnik:
Effect of internal viscosity on Brownian dynamics of DNA molecules in shear flow. 110-114 - Armando Hernandez-Mendoza, Carmen Quinto, Lorenzo Segovia, Ernesto Pérez-Rueda:
Ligand-binding prediction in the resistance-nodulation-cell division (RND) proteins. 115-123
- Wei-Bo Jin, Fang-Li Wu, Dong Kong, Ai-Guang Guo:
HBV-encoded microRNA candidate and its target. 124-126 - Andrey A. Toropov, Danuta Leszczynska, Jerzy Leszczynski:
Predicting water solubility and octanol water partition coefficient for carbon nanotubes based on the chiral vector. 127-128 - Yuan Zhang, Nan Zheng, Yang Zhong:
Computational characterization and design of SARS coronavirus receptor recognition and antibody neutralization. 129-133 - Yuan Zhang, Nan Zheng, Peng Nan, Ying Cao, Masami Hasegawa, Yang Zhong:
Computational simulation of interactions between SARS coronavirus spike mutants and host species-specific receptors. 134-137 - Anuj R. Shah, Christopher S. Oehmen, Jill Harper, Bobbie-Jo M. Webb-Robertson:
Integrating subcellular location for improving machine learning models of remote homology detection in eukaryotic organisms. 138-142
- Lam C. Tsoi, W. Jim Zheng:
A method of microarray data storage using array data type. 143-147
- Ying Wang, Enmin Feng, Ruisheng Wang:
A clustering algorithm based on two distance functions for MEC model. 148-150
Volume 31, Number 3, June 2007
- William R. Taylor:
Protein knots and fold complexity: Some new twists. 151-162 - Bjørn Altermark, Steinar Thorvaldsen, Elin Moe, Arne O. Smalås, Nils Willassen:
Sequence comparison and environmental adaptation of a bacterial endonuclease. 163-172 - Nadezhda M. Belonogova, Tatiana I. Axenovich:
Optimal peeling order for pedigrees with incomplete genotypic information. 173-177 - Arief Gusnanto, Brian D. M. Tom, Philippa Burns, Iain C. Macaulay, Daphne C. Thijssen-Timmer, Marloes R. Tijssen, Cordelia Langford, Nicholas Watkins, Willem H. Ouwehand, Carlo Berzuini, Frank Dudbridge:
Improving the power to detect differentially expressed genes in comparative microarray experiments by including information from self-self hybridizations. 178-185 - Zhili Zuo, Chen Gang, Hanjun Zou, Puah Chum Mok, Weiliang Zhu, Kaixian Chen, Hualiang Jiang:
Why does beta-secretase zymogen possess catalytic activity? Molecular modeling and molecular dynamics simulation studies. 186-195 - Susan Costantini, Giovanni Colonna, Angelo M. Facchiano:
Simulation of conformational changes occurring when a protein interacts with its receptor. 196-206 - Atsushi Inouchi, Shuichi Shinohara, Hiroshi Inoue, Kenji Kita, Mitsuo Itakura:
Identification of specific sequence motifs in the upstream region of 242 human miRNA genes. 207-214
- Weichuan Yu, Junfeng Liu, Chris Colangelo, Erol E. Gulcicek, Hongyu Zhao:
A new protocol of analyzing isotope-coded affinity tag data from high-resolution LC-MS spectrometry. 215-221 - Mudita Singhal, Kelly Domico:
CABIN: Collective Analysis of Biological Interaction Networks. 222-225 - Lingyi Lu, Ziliang Qian, Yu-Dong Cai, Yixue Li:
ECS: An automatic enzyme classifier based on functional domain composition. 226-232 - Guang-Zheng Zhang, Kyungsook Han:
Hepatitis C virus contact map prediction based on binary encoding strategy. 233-238
Volume 31, Number 4, August 2007
- Shinuk Kim, Junil Kim, Kwang-Hyun Cho:
Inferring gene regulatory networks from temporal expression profiles under time-delay and noise. 239-245 - Hae-Seok Eo, Jae Pil Choi, Seung-Jae Noh, Cheol-Goo Hur, Won Kim:
A combined approach for the classification of G protein-coupled receptors and its application to detect GPCR splice variants. 246-256 - Jianmiao Fan, Kagan Tuncay, Peter J. Ortoleva:
Chromosome segregation in Escherichia coli division: A free energy-driven string model. 257-264 - Joon Jin Song, Ho-Jin Lee, Jeffrey S. Morris, Sanghoon Kang:
Clustering of time-course gene expression data using functional data analysis. 265-274 - Yee Leng Yap, Xue Wu Zhang, David K. Smith, Richie Soong, Jeffrey Hill:
Molecular gene expression signature patterns for gastric cancer diagnosis. 275-287
- Ying Wang, Enmin Feng, Ruisheng Wang, Dan Zhang:
The haplotype assembly model with genotype information and iterative local-exhaustive search algorithm. 288-293
- M. James C. Crabbe:
Global warming and coral reefs: Modelling the effect of temperature on Acropora palmata colony growth. 294-297
- Sanghoon Moon, Yanga Byun, Kyungsook Han:
FSDB: A frameshift signal database. 298-302
- Ernesto Estrada, Eugenio Uriarte:
Erratum to "Folding degrees of azurins and pseudoazurins. Implications for structure and function" [Computational Biology and Chemistry 29 (2005) 345-353]. 303
Volume 31, Numbers 5-6, October 2007
- Abhishek Tiwari, Arvind K. T. Sekhar:
Workflow based framework for life science informatics. 305-319
- Sabine Verboven, Karlien Vanden Branden, Peter Goos:
Sequential imputation for missing values. 320-327 - MunJu Kim, Songjoon Baek, Sung Hoon Jung, Kwang-Hyun Cho:
Dynamical characteristics of bacteria clustering by self-generated attractants. 328-334 - Aaron M. Fluitt, Elsje Pienaar, Hendrik J. Viljoen:
Ribosome kinetics and aa-tRNA competition determine rate and fidelity of peptide synthesis. 335-346 - Soohee Han, Yeoin Yoon, Kwang-Hyun Cho:
Inferring biomolecular interaction networks based on convex optimization. 347-354 - Dong He, Dao Zhou, Yanhong Zhou:
Identifying transcription factor targets using enhanced Bayesian classifier. 355-360 - Mingyi Wang, Zuozhou Chen, Sylvie Cloutier:
A hybrid Bayesian network learning method for constructing gene networks. 361-372
- Sukjoon Yoon, William J. Welsh, Heeyoung Jung, Young Do Yoo:
CSSP2: An improved method for predicting contact-dependent secondary structure propensity. 373-377 - Kui Chen, Xiaohang Huang:
Structural analysis of SNARE motifs from sea perch, Lateolabrax japonicus by computerized approaches. 378-383 - Roghayeh Zarei, Shahriar Arab, Mehdi Sadeghi:
A method for protein accessibility prediction based on residue types and conformational states. 384-388
- Susan Costantini, Giovanni Colonna, Angelo M. Facchiano:
PreSSAPro: A software for the prediction of secondary structure by amino acid properties. 389-392
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