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2020 – today
- 2024
[j15]Ruining Deng
, Can Cui, Lucas W. Remedios, Shunxing Bao, R. Michael Womick, Sophie Chiron, Jia Li, Joseph T. Roland, Ken S. Lau, Qi Liu, Keith T. Wilson, Yaohong Wang, Lori A. Coburn, Bennett A. Landman, Yuankai Huo:
Cross-scale multi-instance learning for pathological image diagnosis. Medical Image Anal. 94: 103124 (2024)- [c47]Shunxing Bao, Junlin Guo, Ho Hin Lee, Ruining Deng, Can Cui, Lucas W. Remedios, Quan Liu, Qi Yang, Kaiwen Xu, Xin Yu, Jia Li, Yike Li, Joseph T. Roland, Qi Liu, Ken S. Lau, Keith T. Wilson, Lori A. Coburn, Bennett A. Landman, Yuankai Huo:
Mitigating Over-Saturated Fluorescence Images Through a Semi-Supervised Generative Adversarial Network. ISBI 2024: 1-5 - [c46]Ruining Deng, Quan Liu, Can Cui, Tianyuan Yao, Juming Xiong, Shunxing Bao, Hao Li, Mengmeng Yin, Yu Wang, Shilin Zhao, Yucheng Tang, Haichun Yang, Yuankai Huo:
HATs: Hierarchical Adaptive Taxonomy Segmentation for Panoramic Pathology Image Analysis. MICCAI (4) 2024: 155-166 - [i59]Ho Hin Lee, Adam M. Saunders, Michael E. Kim, Samuel W. Remedios, Yucheng Tang, Qi Yang, Xin Yu, Shunxing Bao, Chloe Cho, Louise A. Mawn, Tonia S. Rex, Kevin L. Schey, Blake E. Dewey, Jeffrey M. Spraggins, Jerry L. Prince, Yuankai Huo, Bennett A. Landman:
Super-Resolution Multi-Contrast Unbiased Eye Atlases With Deep Probabilistic Refinement. CoRR abs/2401.03060 (2024) - [i58]Lucas W. Remedios, Shunxing Bao, Samuel W. Remedios, Ho Hin Lee, Leon Y. Cai, Thomas Z. Li, Ruining Deng, Can Cui, Jia Li, Qi Liu, Ken S. Lau, Joseph T. Roland, Mary K. Washington, Lori A. Coburn, Keith T. Wilson, Yuankai Huo, Bennett A. Landman:
Nucleus subtype classification using inter-modality learning. CoRR abs/2401.05602 (2024) - [i57]Chenyu Gao, Shunxing Bao, Michael E. Kim, Nancy Newlin, Praitayini Kanakaraj, Tianyuan Yao, Gaurav Rudravaram, Yuankai Huo, Daniel Moyer, Kurt Schilling, Walter Kukull, Arthur W. Toga, Derek B. Archer, Timothy J. Hohman, Bennett A. Landman, Zhiyuan Li:
Field-of-View Extension for Diffusion MRI via Deep Generative Models. CoRR abs/2405.03652 (2024) - [i56]Xin Yu, Qi Yang, Han Liu, Ho Hin Lee, Yucheng Tang, Lucas W. Remedios, Michael E. Kim, Shunxing Bao, Ann Xenobia Moore, Luigi Ferrucci, Bennett A. Landman:
Enhancing Single-Slice Segmentation with 3D-to-2D Unpaired Scan Distillation. CoRR abs/2406.12254 (2024) - [i55]Ruining Deng, Quan Liu, Can Cui, Tianyuan Yao, Juming Xiong, Shunxing Bao, Hao Li, Mengmeng Yin, Yu Wang, Shilin Zhao, Yucheng Tang, Haichun Yang, Yuankai Huo:
HATs: Hierarchical Adaptive Taxonomy Segmentation for Panoramic Pathology Image Analysis. CoRR abs/2407.00596 (2024) - [i54]Lucas W. Remedios, Shunxing Bao, Samuel W. Remedios, Ho Hin Lee, Leon Y. Cai, Thomas Z. Li, Ruining Deng, Nancy R. Newlin, Adam M. Saunders, Can Cui, Jia Li, Qi Liu, Ken S. Lau, Joseph T. Roland, Mary K. Washington, Lori A. Coburn, Keith T. Wilson, Yuankai Huo, Bennett A. Landman:
Data-driven Nucleus Subclassification on Colon H&E using Style-transferred Digital Pathology. CoRR abs/2407.06116 (2024) - [i53]Yanfan Zhu, Yash Singh, Khaled Younis, Shunxing Bao, Yuankai Huo:
Persistence Image from 3D Medical Image: Superpixel and Optimized Gaussian Coefficient. CoRR abs/2408.07905 (2024) - [i52]Michael E. Kim, Karthik Ramadass, Chenyu Gao, Praitayini Kanakaraj, Nancy R. Newlin, Gaurav Rudravaram, Kurt G. Schilling, Blake E. Dewey, Derek B. Archer, Timothy J. Hohman, Zhiyuan Li, Shunxing Bao, Bennett A. Landman, Nazirah Mohd Khairi:
Scalable, reproducible, and cost-effective processing of large-scale medical imaging datasets. CoRR abs/2408.14611 (2024) - [i51]Lucas W. Remedios, Han Liu, Samuel W. Remedios, Lianrui Zuo, Adam M. Saunders, Shunxing Bao, Yuankai Huo, Alvin C. Powers, John Virostko, Bennett A. Landman:
Influence of Early through Late Fusion on Pancreas Segmentation from Imperfectly Registered Multimodal MRI. CoRR abs/2409.04563 (2024) - [i50]Zhiyuan Li, Tianyuan Yao, Praitayini Kanakaraj, Chenyu Gao, Shunxing Bao, Lianrui Zuo, Michael E. Kim, Nancy R. Newlin, Gaurav Rudravaram, Nazirah Mohd Khairi, Yuankai Huo, Kurt G. Schilling, Walter Kukull, Arthur W. Toga, Derek B. Archer, Timothy J. Hohman, Bennett A. Landman:
Multi-Modality Conditioned Variational U-Net for Field-of-View Extension in Brain Diffusion MRI. CoRR abs/2409.13846 (2024) - [i49]Michael E. Kim, Chenyu Gao, Karthik Ramadass, Praitayini Kanakaraj, Nancy R. Newlin, Gaurav Rudravaram, Kurt G. Schilling, Blake E. Dewey, David A. Bennett, Sid OBryant, Robert C. Barber, Derek B. Archer, Timothy J. Hohman, Shunxing Bao, Zhiyuan Li, Bennett A. Landman, Nazirah Mohd Khairi, Alzheimer's Disease Neuroimaging Initiative, HABSHD Study Team:
Scalable quality control on processing of large diffusion-weighted and structural magnetic resonance imaging datasets. CoRR abs/2409.17286 (2024) - 2023
- [j14]Yue Liu, Shunxing Bao, Dario J. Englot, Victoria L. Morgan, Warren D. Taylor, Ying Wei, Ipek Oguz, Bennett A. Landman, Ilwoo Lyu:
Hierarchical particle optimization for cortical shape correspondence in temporal lobe resection. Comput. Biol. Medicine 152: 106414 (2023) - [j13]Xin Yu, Qi Yang, Yinchi Zhou, Leon Y. Cai, Riqiang Gao, Ho Hin Lee, Thomas Z. Li, Shunxing Bao, Zhoubing Xu, Thomas A. Lasko, Richard G. Abramson, Zizhao Zhang, Yuankai Huo, Bennett A. Landman, Yucheng Tang:
UNesT: Local spatial representation learning with hierarchical transformer for efficient medical segmentation. Medical Image Anal. 90: 102939 (2023) - [j12]Ho Hin Lee, Yucheng Tang, Qi Yang, Xin Yu, Leon Y. Cai, Lucas W. Remedios, Shunxing Bao, Bennett A. Landman, Yuankai Huo:
Semantic-Aware Contrastive Learning for Multi-Object Medical Image Segmentation. IEEE J. Biomed. Health Informatics 27(9): 4444-4453 (2023) - [c45]Ho Hin Lee, Shunxing Bao, Yuankai Huo, Bennett A. Landman:
3D UX-Net: A Large Kernel Volumetric ConvNet Modernizing Hierarchical Transformer for Medical Image Segmentation. ICLR 2023 - [c44]Can Cui, Yaohong Wang, Shunxing Bao, Yucheng Tang, Ruining Deng, Lucas W. Remedios, Zuhayr Asad, Joseph T. Roland, Ken S. Lau, Qi Liu, Lori A. Coburn, Keith T. Wilson, Bennett A. Landman, Yuankai Huo:
Feasibility of Universal Anomaly Detection Without Knowing the Abnormality in Medical Images. MILLanD@MICCAI 2023: 82-92 - [c43]Ho Hin Lee, Quan Liu, Shunxing Bao, Qi Yang, Xin Yu, Leon Y. Cai, Thomas Z. Li, Yuankai Huo, Xenofon D. Koutsoukos, Bennett A. Landman:
Scaling up 3D Kernels with Bayesian Frequency Re-parameterization for Medical Image Segmentation. MICCAI (4) 2023: 632-641 - [c42]Shunxing Bao, Ho Hin Lee, Qi Yang, Lucas Walker Remedios, Ruining Deng, Can Cui, Leon Yichen Cai, Kaiwen Xu, Xin Yu, Sophie Chiron, Yike Li, Nathan Heath Patterson, Yaohong Wang, Jia Li, Qi Liu, Ken S. Lau, Joseph T. Roland, Lori A. Coburn, Keith T. Wilson, Bennett A. Landman, Yuankai Huo:
Alleviating tiling effect by random walk sliding window in high-resolution histological whole slide image synthesis. MIDL 2023: 1406-1422 - [c41]Xin Yu, Yucheng Tang, Qi Yang, Ho Hin Lee, Riqiang Gao, Shunxing Bao, Ann Zenobia Moore, Luigi Ferrucci, Bennett A. Landman:
Longitudinal variability analysis on low-dose abdominal CT with deep learning-based segmentation. Medical Imaging: Image Processing 2023 - [c40]Ho Hin Lee, Yucheng Tang, Shunxing Bao, Qi Yang, Xin Yu, Kevin L. Schey, Jeffrey M. Spraggins, Yuankai Huo, Bennett A. Landman:
Unsupervised registration refinement for generating unbiased eye atlas. Medical Imaging: Image Processing 2023 - [c39]Karthik Ramadass, Xin Yu, Leon Y. Cai, Yucheng Tang, Shunxing Bao, Cailey I. Kerley, Micah D'Archangel, Laura A. Barquero, Allen T. Newton, Isabel Gauthier, Rankin W. McGugin, Benoit M. Dawant, Laurie E. Cutting, Yuankai Huo, Bennett A. Landman:
Deep whole brain segmentation of 7T structural MRI. Medical Imaging: Image Processing 2023 - [i48]Zhuangwei Kang, Yogesh D. Barve, Shunxing Bao, Abhishek Dubey, Aniruddha Gokhale:
DMSConfig: Automated Configuration Tuning for Distributed IoT Message Systems Using Deep Reinforcement Learning. CoRR abs/2302.09146 (2023) - [i47]Ho Hin Lee, Quan Liu, Shunxing Bao, Qi Yang, Xin Yu, Leon Y. Cai, Thomas Z. Li, Yuankai Huo, Xenofon D. Koutsoukos, Bennett A. Landman:
Scaling Up 3D Kernels with Bayesian Frequency Re-parameterization for Medical Image Segmentation. CoRR abs/2303.05785 (2023) - [i46]Ruining Deng, Can Cui, Lucas W. Remedios, Shunxing Bao, R. Michael Womick, Sophie Chiron, Jia Li, Joseph T. Roland, Ken S. Lau, Qi Liu, Keith T. Wilson, Yaohong Wang, Lori A. Coburn, Bennett A. Landman, Yuankai Huo:
Cross-scale Multi-instance Learning for Pathological Image Diagnosis. CoRR abs/2304.00216 (2023) - [i45]Ruining Deng, Can Cui, Quan Liu, Tianyuan Yao, Lucas W. Remedios, Shunxing Bao, Bennett A. Landman, Lee E. Wheless, Lori A. Coburn, Keith T. Wilson, Yaohong Wang, Shilin Zhao, Agnes B. Fogo, Haichun Yang, Yucheng Tang, Yuankai Huo:
Segment Anything Model (SAM) for Digital Pathology: Assess Zero-shot Segmentation on Whole Slide Imaging. CoRR abs/2304.04155 (2023) - [i44]Lucas W. Remedios, Leon Y. Cai, Samuel W. Remedios, Karthik Ramadass, Aravind R. Krishnan, Ruining Deng, Can Cui, Shunxing Bao, Lori A. Coburn, Yuankai Huo, Bennett A. Landman:
Exploring shared memory architectures for end-to-end gigapixel deep learning. CoRR abs/2304.12149 (2023) - [i43]Yinchi Zhou, Ho Hin Lee, Yucheng Tang, Xin Yu, Qi Yang, Shunxing Bao, Jeffrey M. Spraggins, Yuankai Huo, Bennett A. Landman:
Multi-Contrast Computed Tomography Atlas of Healthy Pancreas. CoRR abs/2306.01853 (2023) - [i42]Can Cui, Ruining Deng, Quan Liu, Tianyuan Yao, Shunxing Bao, Lucas W. Remedios, Yucheng Tang, Yuankai Huo:
All-in-SAM: from Weak Annotation to Pixel-wise Nuclei Segmentation with Prompt-based Finetuning. CoRR abs/2307.00290 (2023) - [i41]Can Cui, Yaohong Wang, Shunxing Bao, Yucheng Tang, Ruining Deng, Lucas W. Remedios, Zuhayr Asad, Joseph T. Roland, Ken S. Lau, Qi Liu, Lori A. Coburn, Keith T. Wilson, Bennett A. Landman, Yuankai Huo:
Feasibility of Universal Anomaly Detection without Knowing the Abnormality in Medical Images. CoRR abs/2307.00750 (2023) - [i40]Franklin Hu, Ruining Deng, Shunxing Bao, Haichun Yang, Yuankai Huo:
Multi-scale Multi-site Renal Microvascular Structures Segmentation for Whole Slide Imaging in Renal Pathology. CoRR abs/2308.05782 (2023) - [i39]Haoju Leng, Ruining Deng, Shunxing Bao, Dazheng Fang, Bryan A. Millis, Yucheng Tang, Haichun Yang, Xiao Wang, Yifan Peng, Lipeng Wan, Yuankai Huo:
High-performance Data Management for Whole Slide Image Analysis in Digital Pathology. CoRR abs/2308.05784 (2023) - [i38]Xueyuan Li, Ruining Deng, Yucheng Tang, Shunxing Bao, Haichun Yang, Yuankai Huo:
Leverage Weakly Annotation to Pixel-wise Annotation via Zero-shot Segment Anything Model for Molecular-empowered Learning. CoRR abs/2308.05785 (2023) - [i37]Shunxing Bao, Sichen Zhu, Vasantha L. Kolachala, Lucas W. Remedios, Yeonjoo Hwang, Yutong Sun, Ruining Deng, Can Cui, Yike Li, Jia Li, Joseph T. Roland, Qi Liu, Ken S. Lau, Subra Kugathasan, Peng Qiu, Keith T. Wilson, Lori A. Coburn, Bennett A. Landman, Yuankai Huo:
Cell Spatial Analysis in Crohn's Disease: Unveiling Local Cell Arrangement Pattern with Graph-based Signatures. CoRR abs/2308.10166 (2023) - [i36]Muhao Liu, Chenyang Qi, Shunxing Bao, Quan Liu, Ruining Deng, Yu Wang, Shilin Zhao, Haichun Yang, Yuankai Huo:
Evaluation Kidney Layer Segmentation on Whole Slide Imaging using Convolutional Neural Networks and Transformers. CoRR abs/2309.02563 (2023) - [i35]Xin Yu, Yucheng Tang, Qi Yang, Ho Hin Lee, Shunxing Bao, Yuankai Huo, Bennett A. Landman:
Enhancing Hierarchical Transformers for Whole Brain Segmentation with Intracranial Measurements Integration. CoRR abs/2309.04071 (2023) - [i34]Xin Yu, Qi Yang, Yucheng Tang, Riqiang Gao, Shunxing Bao, Leon Y. Cai, Ho Hin Lee, Yuankai Huo, Ann Zenobia Moore, Luigi Ferrucci, Bennett A. Landman:
Deep conditional generative models for longitudinal single-slice abdominal computed tomography harmonization. CoRR abs/2309.09392 (2023) - [i33]Aravind R. Krishnan, Kaiwen Xu, Thomas Z. Li, Chenyu Gao, Lucas W. Remedios, Praitayini Kanakaraj, Ho Hin Lee, Shunxing Bao, Kim L. Sandler, Fabien Maldonado, Ivana Isgum, Bennett A. Landman:
Inter-vendor harmonization of Computed Tomography (CT) reconstruction kernels using unpaired image translation. CoRR abs/2309.12953 (2023) - [i32]Ho Hin Lee, Quan Liu, Qi Yang, Xin Yu, Shunxing Bao, Yuankai Huo, Bennett A. Landman:
DeformUX-Net: Exploring a 3D Foundation Backbone for Medical Image Segmentation with Depthwise Deformable Convolution. CoRR abs/2310.00199 (2023) - 2022
- [j11]Ho Hin Lee, Yucheng Tang, Kaiwen Xu, Shunxing Bao, Agnes B. Fogo, Raymond Harris, Mark P. de Caestecker, Mattias P. Heinrich, Jeffrey M. Spraggins, Yuankai Huo, Bennett A. Landman:
Multi-contrast computed tomography healthy kidney atlas. Comput. Biol. Medicine 146: 105555 (2022) - [j10]Praitayini Kanakaraj, Karthik Ramadass, Shunxing Bao, Melissa A. Basford, Laura M. Jones, Ho Hin Lee, Kaiwen Xu, Kurt G. Schilling, John Jeffrey Carr, James G. Terry, Yuankai Huo, Kim L. Sandler, Allen T. Netwon, Bennett A. Landman:
Workflow Integration of Research AI Tools into a Hospital Radiology Rapid Prototyping Environment. J. Digit. Imaging 35(4): 1023-1033 (2022) - [j9]Shunxing Bao, Brian D. Boyd, Praitayini Kanakaraj, Karthik Ramadass, Francisco A. C. Meyer, Yuqian Liu, William E. Duett, Yuankai Huo, Ilwoo Lyu, David H. Zald, Seth A. Smith, Baxter P. Rogers, Bennett A. Landman:
Integrating the BIDS Neuroimaging Data Format and Workflow Optimization for Large-Scale Medical Image Analysis. J. Digit. Imaging 35(6): 1576-1589 (2022) - [c38]Shuang Zhou, Yuankai Huo, Shunxing Bao, Bennett A. Landman, Aniruddha Gokhale:
FedACA: An Adaptive Communication-Efficient Asynchronous Framework for Federated Learning. ACSOS 2022: 71-80 - [c37]Xingyu Zhou, Robert Canady, Yi Li, Shunxing Bao, Yogesh D. Barve, Daniel Balasubramanian, Aniruddha Gokhale:
Guarding Against Universal Adversarial Perturbations in Data-driven Cloud/Edge Services. IC2E 2022: 233-244 - [c36]Can Cui, Zuhayr Asad, William F. Dean, Isabelle T. Smith, Christopher Madden, Shunxing Bao, Bennett A. Landman, Joseph T. Roland, Lori A. Coburn, Keith T. Wilson, Jeffrey P. Zwerner, Shilin Zhao, Lee E. Wheless, Yuankai Huo:
Multi-modal learning with missing data for cancer diagnosis using histopathological and genomic data. Medical Imaging: Computer-Aided Diagnosis 2022 - [c35]Ruining Deng, Can Cui, Lucas W. Remedios, Shunxing Bao, R. Michael Womick, Sophie Chiron, Jia Li, Joseph T. Roland, Ken S. Lau, Qi Liu, Keith T. Wilson, Yaohong Wang, Lori A. Coburn, Bennett A. Landman, Yuankai Huo:
Cross-Scale Attention Guided Multi-instance Learning for Crohn's Disease Diagnosis with Pathological Images. MMMI@MICCAI 2022: 24-33 - [c34]Shunxing Bao, Jia Li, Can Cui, Yucheng Tang, Ruining Deng, Lucas W. Remedios, Ho Hin Lee, Sophie Chiron, Nathan Heath Patterson, Ken S. Lau, Lori A. Coburn, Keith T. Wilson, Joseph T. Roland, Bennett A. Landman, Qi Liu, Yuankai Huo:
MxIF Q-score: Biology-Informed Quality Assurance for Multiplexed Immunofluorescence Imaging. MOVI@MICCAI 2022: 42-52 - [c33]Xin Yu, Qi Yang, Yucheng Tang, Riqiang Gao, Shunxing Bao, Leon Y. Cai, Ho Hin Lee, Yuankai Huo, Ann Zenobia Moore, Luigi Ferrucci, Bennett A. Landman:
Reducing Positional Variance in Cross-sectional Abdominal CT Slices with Deep Conditional Generative Models. MICCAI (8) 2022: 202-212 - [c32]Xin Yu, Yucheng Tang, Qi Yang, Ho Hin Lee, Shunxing Bao, Ann Zenobia Moore, Luigi Ferrucci, Bennett A. Landman:
Accelerating 2D abdominal organ segmentation with active learning. Medical Imaging: Image Processing 2022 - [c31]Qi Yang, Xin Yu, Ho Hin Lee, Yucheng Tang, Shunxing Bao, Kristofer S. Gravenstein, Ann Zenobia Moore, Sokratis Makrogiannis, Luigi Ferrucci, Bennett A. Landman:
Quantification of muscle, bones, and fat on single slice thigh CT. Medical Imaging: Image Processing 2022 - [c30]Ho Hin Lee, Yucheng Tang, Shunxing Bao, Yan Xu, Qi Yang, Xin Yu, Agnes B. Fogo, Raymond Harris, Mark P. de Caestecker, Jeffrey M. Spraggins, Mattias P. Heinrich, Yuankai Huo, Bennett A. Landman:
Supervised deep generation of high-resolution arterial phase computed tomography kidney substructure atlas. Medical Imaging: Image Processing 2022 - [i31]Xin Yu, Yucheng Tang, Yinchi Zhou, Riqiang Gao, Qi Yang, Ho Hin Lee, Thomas Z. Li, Shunxing Bao, Yuankai Huo, Zhoubing Xu, Thomas A. Lasko, Richard G. Abramson, Bennett A. Landman:
Characterizing Renal Structures with 3D Block Aggregate Transformers. CoRR abs/2203.02430 (2022) - [i30]Ho Hin Lee, Yucheng Tang, Riqiang Gao, Qi Yang, Xin Yu, Shunxing Bao, James G. Terry, John Jeffrey Carr, Yuankai Huo, Bennett A. Landman:
Pseudo-Label Guided Multi-Contrast Generalization for Non-Contrast Organ-Aware Segmentation. CoRR abs/2205.05898 (2022) - [i29]Ruining Deng, Can Cui, Lucas W. Remedios, Shunxing Bao, R. Michael Womick, Sophie Chiron, Jia Li, Joseph T. Roland, Ken S. Lau, Qi Liu, Keith T. Wilson, Yaohong Wang, Lori A. Coburn, Bennett A. Landman, Yuankai Huo:
Cross-scale Attention Guided Multi-instance Learning for Crohn's Disease Diagnosis with Pathological Images. CoRR abs/2208.07322 (2022) - [i28]Tianyuan Yao, Chang Qu, Jun Long, Quan Liu, Ruining Deng, Yuanhan Tian, Jiachen Xu, Aadarsh Jha, Zuhayr Asad, Shunxing Bao, Mengyang Zhao, Agnes B. Fogo, Bennett A. Landman, Haichun Yang, Catie Chang, Yuankai Huo:
Compound Figure Separation of Biomedical Images: Mining Large Datasets for Self-supervised Learning. CoRR abs/2208.14357 (2022) - [i27]Xin Yu, Yucheng Tang, Qi Yang, Ho Hin Lee, Riqiang Gao, Shunxing Bao, Ann Zenobia Moore, Luigi Ferrucci, Bennett A. Landman:
Longitudinal Variability Analysis on Low-dose Abdominal CT with Deep Learning-based Segmentation. CoRR abs/2209.14217 (2022) - [i26]Xin Yu, Qi Yang, Yinchi Zhou, Leon Y. Cai, Riqiang Gao, Ho Hin Lee, Thomas Z. Li, Shunxing Bao, Zhoubing Xu, Thomas A. Lasko, Richard G. Abramson, Zizhao Zhang, Yuankai Huo, Bennett A. Landman, Yucheng Tang:
UNesT: Local Spatial Representation Learning with Hierarchical Transformer for Efficient Medical Segmentation. CoRR abs/2209.14378 (2022) - [i25]Xin Yu, Qi Yang, Yucheng Tang, Riqiang Gao, Shunxing Bao, Leon Y. Cai, Ho Hin Lee, Yuankai Huo, Ann Zenobia Moore, Luigi Ferrucci, Bennett A. Landman:
Reducing Positional Variance in Cross-sectional Abdominal CT Slices with Deep Conditional Generative Models. CoRR abs/2209.14467 (2022) - [i24]Ho Hin Lee, Shunxing Bao, Yuankai Huo, Bennett A. Landman:
3D UX-Net: A Large Kernel Volumetric ConvNet Modernizing Hierarchical Transformer for Medical Image Segmentation. CoRR abs/2209.15076 (2022) - [i23]Ho Hin Lee, Yucheng Tang, Han Liu, Yubo Fan, Leon Y. Cai, Qi Yang, Xin Yu, Shunxing Bao, Yuankai Huo, Bennett A. Landman:
Adaptive Contrastive Learning with Dynamic Correlation for Multi-Phase Organ Segmentation. CoRR abs/2210.08652 (2022) - [i22]Qi Yang, Xin Yu, Ho Hin Lee, Leon Y. Cai, Kaiwen Xu, Shunxing Bao, Yuankai Huo, Ann Zenobia Moore, Sokratis Makrogiannis, Luigi Ferrucci, Bennett A. Landman:
Single Slice Thigh CT Muscle Group Segmentation with Domain Adaptation and Self-Training. CoRR abs/2212.00059 (2022) - 2021
- [j8]Yucheng Tang, Riqiang Gao, Ho Hin Lee, Shizhong Han, Yunqiang Chen, Dashan Gao, Vishwesh Nath, Camilo Bermudez, Michael R. Savona, Richard G. Abramson, Shunxing Bao, Ilwoo Lyu, Yuankai Huo, Bennett A. Landman:
High-resolution 3D abdominal segmentation with random patch network fusion. Medical Image Anal. 69: 101894 (2021) - [j7]Yucheng Tang, Riqiang Gao, Shizhong Han, Yunqiang Chen, Dashan Gao, Vishwesh Nath, Camilo Bermudez, Michael R. Savona, Shunxing Bao, Ilwoo Lyu, Yuankai Huo, Bennett A. Landman:
Body Part Regression With Self-Supervision. IEEE Trans. Medical Imaging 40(5): 1499-1507 (2021) - [c29]Ziran Min, Hongyang Sun, Shunxing Bao, Aniruddha S. Gokhale, Swapna S. Gokhale:
A Self-Adaptive Load Balancing Approach for Software-Defined Networks in IoT. ACSOS 2021: 11-20 - [c28]Shunxing Bao, Yucheng Tang, Ho Hin Lee, Riqiang Gao, Sophie Chiron, Ilwoo Lyu, Lori A. Coburn, Keith T. Wilson, Joseph T. Roland, Bennett A. Landman, Yuankai Huo:
Random Multi-Channel Image Synthesis for Multiplexed Immunofluorescence Imaging. COMPAY@MICCAI 2021: 36-46 - [c27]Zhuangwei Kang, Yogesh D. Barve, Shunxing Bao, Abhishek Dubey, Aniruddha Gokhale:
Configuration Tuning for Distributed IoT Message Systems Using Deep Reinforcement Learning: Poster Abstract. IoTDI 2021: 273-274 - [c26]Ho Hin Lee, Yucheng Tang, Shunxing Bao, Richard G. Abramson, Yuankai Huo, Bennett A. Landman:
Rap-Net: Coarse-To-Fine Multi-Organ Segmentation With Single Random Anatomical Prior. ISBI 2021: 1491-1494 - [c25]Yucheng Tang, Riqiang Gao, Ho Hin Lee, Qi Yang, Xin Yu, Yuyin Zhou, Shunxing Bao, Yuankai Huo, Jeffrey M. Spraggins, Jack Virostko, Zhoubing Xu, Bennett A. Landman:
Pancreas CT Segmentation by Predictive Phenotyping. MICCAI (1) 2021: 25-35 - [c24]Ruining Deng, Quan Liu, Shunxing Bao, Aadarsh Jha, Catie Chang, Bryan A. Millis, Matthew J. Tyska, Yuankai Huo:
CaCL: Class-Aware Codebook Learning for Weakly Supervised Segmentation on Diffuse Image Patterns. DGM4MICCAI/DALI@MICCAI 2021: 93-102 - [c23]Tianyuan Yao, Chang Qu, Quan Liu, Ruining Deng, Yuanhan Tian, Jiachen Xu, Aadarsh Jha, Shunxing Bao, Mengyang Zhao, Agnes B. Fogo, Bennett A. Landman, Catie Chang, Haichun Yang, Yuankai Huo:
Compound Figure Separation of Biomedical Images with Side Loss. DGM4MICCAI/DALI@MICCAI 2021: 173-183 - [c22]Ho Hin Lee, Yucheng Tang, Kaiwen Xu, Shunxing Bao, Agnes B. Fogo, Raymond Harris, Mark P. de Caestecker, Mattias P. Heinrich, Jeffrey M. Spraggins, Yuankai Huo, Bennett A. Landman:
Construction of a multi-phase contrast computed tomography kidney atlas. Medical Imaging: Image Processing 2021 - [c21]Yucheng Tang, Riqiang Gao, Ho Hin Lee, Zhoubing Xu, Brent V. Savoie, Shunxing Bao, Yuankai Huo, Agnes B. Fogo, Raymond Harris, Mark P. de Caestecker, Jeffrey M. Spraggins, Bennett A. Landman:
Renal cortex, medulla and pelvicaliceal system segmentation on arterial phase CT images with random patch-based networks. Medical Imaging: Image Processing 2021 - [c20]Kaiwen Xu, Riqiang Gao, Mirza S. Khan, Shunxing Bao, Yucheng Tang, Steve Deppen, Yuankai Huo, Kim L. Sandler, Pierre P. Massion, Mattias P. Heinrich, Bennett A. Landman:
Development and characterization of a chest CT atlas. Medical Imaging: Image Processing 2021 - [i21]Ho Hin Lee, Yucheng Tang, Qi Yang, Xin Yu, Shunxing Bao, Bennett A. Landman, Yuankai Huo:
Attention-Guided Supervised Contrastive Learning for Semantic Segmentation. CoRR abs/2106.01596 (2021) - [i20]Tianyuan Yao, Chang Qu, Quan Liu, Ruining Deng, Yuanhan Tian, Jiachen Xu, Aadarsh Jha, Shunxing Bao, Mengyang Zhao, Agnes B. Fogo, Bennett A. Landman, Catie Chang, Haichun Yang, Yuankai Huo:
Compound Figure Separation of Biomedical Images with Side Loss. CoRR abs/2107.08650 (2021) - [i19]Shunxing Bao, Yucheng Tang, Ho Hin Lee, Riqiang Gao, Sophie Chiron, Ilwoo Lyu, Lori A. Coburn, Keith T. Wilson, Joseph T. Roland, Bennett A. Landman, Yuankai Huo:
Random Multi-Channel Image Synthesis for Multiplexed Immunofluorescence Imaging. CoRR abs/2109.09004 (2021) - 2020
- [j6]Riqiang Gao, Yuankai Huo, Shunxing Bao, Yucheng Tang, Sanja L. Antic, Emily S. Epstein, Steve Deppen, Alexis B. Paulson, Kim L. Sandler, Pierre P. Massion, Bennett A. Landman:
Multi-path x-D recurrent neural networks for collaborative image classification. Neurocomputing 397: 48-59 (2020) - [j5]Riqiang Gao, Yucheng Tang, Kaiwen Xu, Yuankai Huo, Shunxing Bao, Sanja L. Antic, Emily S. Epstein, Steve Deppen, Alexis B. Paulson, Kim L. Sandler, Pierre P. Massion, Bennett A. Landman:
Time-distanced gates in long short-term memory networks. Medical Image Anal. 65: 101785 (2020) - [c19]Xingyu Zhou, Robert Canady, Shunxing Bao, Aniruddha Gokhale:
Cost-effective Hardware Accelerator Recommendation for Edge Computing. HotEdge 2020 - [c18]Lingyan Hao, Shunxing Bao, Yucheng Tang, Riqiang Gao, Prasanna Parvathaneni, Jacob A. Miller, Willa Voorhies, Jewelia Yao, Silvia A. Bunge, Kevin S. Weiner, Bennett A. Landman, Ilwoo Lyu:
Automatic Labeling of Cortical Sulci Using Spherical Convolutional Neural Networks in a Developmental Cohort. ISBI 2020: 412-415 - [c17]Yucheng Tang, Riqiang Gao, Ho Hin Lee, Quinn Stanton Wells, Ashley Spann, James G. Terry, John Jeffrey Carr, Yuankai Huo, Shunxing Bao, Bennett A. Landman:
Prediction of Type II Diabetes Onset with Computed Tomography and Electronic Medical Records. ML-CDS/CLIP@MICCAI 2020: 13-23 - [i18]Ruining Deng, Quan Liu, Shunxing Bao, Aadarsh Jha, Catie Chang, Bryan A. Millis, Matthew J. Tyska, Yuankai Huo:
CaCL: Class-aware Codebook Learning for Weakly Supervised Segmentation on Diffuse Image Patterns. CoRR abs/2011.00794 (2020) - [i17]Kaiwen Xu, Riqiang Gao, Mirza S. Khan, Shunxing Bao, Yucheng Tang, Steve A. Deppen, Yuankai Huo, Kim L. Sandler, Pierre P. Massion, Mattias P. Heinrich, Bennett A. Landman:
Development and Characterization of a Chest CT Atlas. CoRR abs/2012.03124 (2020) - [i16]Ho Hin Lee, Yucheng Tang, Shunxing Bao, Richard G. Abramson, Yuankai Huo, Bennett A. Landman:
RAP-Net: Coarse-to-Fine Multi-Organ Segmentation with Single Random Anatomical Prior. CoRR abs/2012.12425 (2020) - [i15]Ho Hin Lee, Yucheng Tang, Kaiwen Xu, Shunxing Bao, Agnes B. Fogo, Raymond Harris, Mark P. de Caestecker, Mattias P. Heinrich, Jeffrey M. Spraggins, Yuankai Huo, Bennett A. Landman:
Multi-Contrast Computed Tomography Healthy Kidney Atlas. CoRR abs/2012.12432 (2020)
2010 – 2019
- 2019
- [j4]Yuankai Huo, Zhoubing Xu, Yunxi Xiong, Katherine Aboud, Prasanna Parvathaneni, Shunxing Bao, Camilo Bermudez, Susan M. Resnick, Laurie E. Cutting, Bennett A. Landman:
3D whole brain segmentation using spatially localized atlas network tiles. NeuroImage 194: 105-119 (2019) - [j3]Yuankai Huo, Zhoubing Xu, Hyeonsoo Moon, Shunxing Bao, Albert Assad, Tamara K. Moyo, Michael R. Savona, Richard G. Abramson, Bennett A. Landman:
SynSeg-Net: Synthetic Segmentation Without Target Modality Ground Truth. IEEE Trans. Medical Imaging 38(4): 1016-1025 (2019) - [j2]Yuankai Huo, Zhoubing Xu, Shunxing Bao, Camilo Bermudez, Hyeonsoo Moon, Prasanna Parvathaneni, Tamara K. Moyo, Michael R. Savona, Albert Assad, Richard G. Abramson, Bennett A. Landman:
Splenomegaly Segmentation on Multi-Modal MRI Using Deep Convolutional Networks. IEEE Trans. Medical Imaging 38(5): 1185-1196 (2019) - [c16]Anirban Bhattacharjee, Yogesh D. Barve, Shweta Khare, Shunxing Bao, Zhuangwei Kang, Aniruddha Gokhale, Thomas Damiano:
STRATUM: A BigData-as-a-Service for Lifecycle Management of IoT Analytics Applications. IEEE BigData 2019: 1607-1612 - [c15]Riqiang Gao, Yuankai Huo, Shunxing Bao, Yucheng Tang, Sanja L. Antic, Emily S. Epstein, Aneri B. Balar, Steve Deppen, Alexis B. Paulson, Kim L. Sandler, Pierre P. Massion, Bennett A. Landman:
Distanced LSTM: Time-Distanced Gates in Long Short-Term Memory Models for Lung Cancer Detection. MLMI@MICCAI 2019: 310-318 - [c14]Prasanna Parvathaneni, Shunxing Bao, Vishwesh Nath, Neil D. Woodward, Daniel O. Claassen, Carissa J. Cascio, David H. Zald, Yuankai Huo, Bennett A. Landman, Ilwoo Lyu:
Cortical Surface Parcellation Using Spherical Convolutional Neural Networks. MICCAI (3) 2019: 501-509 - [c13]Jiachen Wang, Riqiang Gao, Yuankai Huo, Shunxing Bao, Yunxi Xiong, Sanja L. Antic, Travis J. Osterman, Pierre P. Massion, Bennett A. Landman:
Lung cancer detection using co-learning from chest CT images and clinical demographics. Medical Imaging: Image Processing 2019: 109491G - [c12]Cailey I. Kerley, Yuankai Huo, Shikha Chaganti, Shunxing Bao, Mayur B. Patel, Bennett A. Landman:
Montage based 3D medical image retrieval from traumatic brain injury cohort using deep convolutional neural network. Medical Imaging: Image Processing 2019: 109492U - [c11]Yuankai Huo, James G. Terry, Jiachen Wang, Vishwesh Nath, Camilo Bermudez, Shunxing Bao, Prasanna Parvathaneni, John Jeffrey Carr, Bennett A. Landman:
Coronary calcium detection using 3D attention identical dual deep network based on weakly supervised learning. Medical Imaging: Image Processing 2019: 1094917 - [c10]Anirban Bhattacharjee, Yogesh D. Barve, Shweta Khare, Shunxing Bao, Aniruddha Gokhale, Thomas Damiano:
Stratum: A Serverless Framework for the Lifecycle Management of Machine Learning-based Data Analytics Tasks. OpML 2019: 59-61 - [i14]Jiachen Wang, Riqiang Gao, Yuankai Huo, Shunxing Bao, Yunxi Xiong, Sanja Antic, Travis Osterman, Pierre P. Massion, Bennett A. Landman:
Lung Cancer Detection using Co-learning from Chest CT Images and Clinical Demographics. CoRR abs/1902.08236 (2019) - [i13]Yuankai Huo, Zhoubing Xu, Yunxi Xiong, Katherine Aboud, Prasanna Parvathaneni, Shunxing Bao, Camilo Bermudez, Susan M. Resnick, Laurie E. Cutting, Bennett A. Landman:
3D Whole Brain Segmentation using Spatially Localized Atlas Network Tiles. CoRR abs/1903.12152 (2019) - [i12]Anirban Bhattacharjee, Yogesh D. Barve, Shweta Khare, Shunxing Bao, Aniruddha Gokhale, Thomas Damiano:
Stratum: A Serverless Framework for Lifecycle Management of Machine Learning based Data Analytics Tasks. CoRR abs/1904.01727 (2019) - [i11]Riqiang Gao, Yuankai Huo, Shunxing Bao, Yucheng Tang, Sanja L. Antic, Emily S. Epstein, Aneri B. Balar, Steve Deppen, Alexis B. Paulson, Kim L. Sandler, Pierre P. Massion, Bennett A. Landman:
Distanced LSTM: Time-Distanced Gates in Long Short-Term Memory Models for Lung Cancer Detection. CoRR abs/1909.05321 (2019) - [i10]Yuankai Huo, Yucheng Tang, Yunqiang Chen, Dashan Gao, Shizhong Han, Shunxing Bao, Smita De, James G. Terry, John Jeffrey Carr, Richard G. Abramson, Bennett A. Landman:
Stochastic tissue window normalization of deep learning on computed tomography. CoRR abs/1912.00420 (2019) - 2018
- [b1]Shunxing Bao:
Algorithmic Enhancements to Data Colocation Grid Frameworks for Big Data Medical Image Processing. Vanderbilt University, Nashville, TN, USA, 2018 - [j1]Yuankai Huo, Justin A. Blaber, Stephen M. Damon, Brian D. Boyd, Shunxing Bao, Prasanna Parvathaneni, Camilo Bermudez, Shikha Chaganti, Vishwesh Nath, Jasmine M. Greer, Ilwoo Lyu, William R. French, Allen T. Newton, Baxter P. Rogers, Bennett A. Landman:
Towards Portable Large-Scale Image Processing with High-Performance Computing. J. Digit. Imaging 31(3): 304-314 (2018) - [c9]Shunxing Bao, Prasanna Parvathaneni, Yuankai Huo, Yogesh D. Barve, Andrew J. Plassard, Yuang Yao, Hongyang Sun, Ilwoo Lyu, David H. Zald, Bennett A. Landman, Aniruddha S. Gokhale:
Technology Enablers for Big Data, Multi-Stage Analysis in Medical Image Processing. IEEE BigData 2018: 1337-1346 - [c8]Yuankai Huo, Zhoubing Xu, Shunxing Bao, Albert Assad, Richard G. Abramson, Bennett A. Landman:
Adversarial synthesis learning enables segmentation without target modality ground truth. ISBI 2018: 1217-1220 - [c7]Yuankai Huo, Zhoubing Xu, Katherine Aboud, Prasanna Parvathaneni, Shunxing Bao, Camilo Bermudez, Susan M. Resnick, Laurie E. Cutting, Bennett A. Landman:
Spatially Localized Atlas Network Tiles Enables 3D Whole Brain Segmentation from Limited Data. MICCAI (3) 2018: 698-705 - [c6]Meg F. Bobo, Shunxing Bao, Yuankai Huo, Yuang Yao, Jack Virostko, Andrew J. Plassard, Ilwoo Lyu, Albert Assad, Richard G. Abramson, Melissa A. Hilmes, Bennett A. Landman:
Fully convolutional neural networks improve abdominal organ segmentation. Medical Imaging: Image Processing 2018: 105742V - [c5]Yuankai Huo, Zhoubing Xu, Shunxing Bao, Camilo Bermudez, Andrew J. Plassard, Jiaqi Liu, Yuang Yao, Albert Assad, Richard G. Abramson, Bennett A. Landman:
Splenomegaly segmentation using global convolutional kernels and conditional generative adversarial networks. Medical Imaging: Image Processing 2018: 1057409 - [c4]Yuankai Huo, Shunxing Bao, Prasanna Parvathaneni, Bennett A. Landman:
Improved stability of whole brain surface parcellation with multi-atlas segmentation. Medical Imaging: Image Processing 2018: 1057438 - [i9]Yuankai Huo, Zhoubing Xu, Katherine Aboud, Prasanna Parvathaneni, Shunxing Bao, Camilo Bermudez, Susan M. Resnick, Laurie E. Cutting, Bennett A. Landman:
Spatially Localized Atlas Network Tiles Enables 3D Whole Brain Segmentation from Limited Data. CoRR abs/1806.00546 (2018) - [i8]Yuankai Huo, Zhoubing Xu, Hyeonsoo Moon, Shunxing Bao, Albert Assad, Tamara K. Moyo, Michael R. Savona, Richard G. Abramson, Bennett A. Landman:
SynSeg-Net: Synthetic Segmentation Without Target Modality Ground Truth. CoRR abs/1810.06498 (2018) - [i7]Yuankai Huo, Zhoubing Xu, Shunxing Bao, Camilo Bermudez, Hyeonsoo Moon, Prasanna Parvathaneni, Tamara K. Moyo, Michael R. Savona, Albert Assad, Richard G. Abramson, Bennett A. Landman:
Splenomegaly Segmentation on Multi-modal MRI using Deep Convolutional Networks. CoRR abs/1811.04045 (2018) - [i6]Yuankai Huo, James G. Terry, Jiachen Wang, Vishwesh Nath, Camilo Bermudez, Shunxing Bao, Prasanna Parvathaneni, John Jeffrey Carr, Bennett A. Landman:
Coronary Calcium Detection using 3D Attention Identical Dual Deep Network Based on Weakly Supervised Learning. CoRR abs/1811.04289 (2018) - [i5]Cailey I. Kerley, Yuankai Huo, Shikha Chaganti, Shunxing Bao, Mayur B. Patel, Bennett A. Landman:
Montage based 3D Medical Image Retrieval from Traumatic Brain Injury Cohort using Deep Convolutional Neural Network. CoRR abs/1812.04118 (2018) - 2017
- [c3]Shunxing Bao, Bennett A. Landman, Aniruddha S. Gokhale:
Algorithmic Enhancements to Big Data Computing Frameworks for Medical Image Processing. IC2E 2017: 13-16 - [c2]Shunxing Bao, Andrew J. Plassard, Bennett A. Landman, Aniruddha S. Gokhale:
Cloud Engineering Principles and Technology Enablers for Medical Image Processing-as-a-Service. IC2E 2017: 127-137 - [i4]Yuankai Huo, Zhoubing Xu, Shunxing Bao, Camilo Bermudez, Andrew J. Plassard, Jiaqi Liu, Yuang Yao, Albert Assad, Richard G. Abramson, Bennett A. Landman:
Splenomegaly Segmentation using Global Convolutional Kernels and Conditional Generative Adversarial Networks. CoRR abs/1712.00542 (2017) - [i3]Yuankai Huo, Shunxing Bao, Prasanna Parvathaneni, Bennett A. Landman:
Improved Stability of Whole Brain Surface Parcellation with Multi-Atlas Segmentation. CoRR abs/1712.00543 (2017) - [i2]Yuankai Huo, Zhoubing Xu, Shunxing Bao, Albert Assad, Richard G. Abramson, Bennett A. Landman:
Adversarial Synthesis Learning Enables Segmentation Without Target Modality Ground Truth. CoRR abs/1712.07695 (2017) - [i1]Shunxing Bao, Yuankai Huo, Prasanna Parvathaneni, Andrew J. Plassard, Camilo Bermudez, Yuang Yao, Ilwoo Lyu, Aniruddha S. Gokhale, Bennett A. Landman:
A Data Colocation Grid Framework for Big Data Medical Image Processing - Backend Design. CoRR abs/1712.08634 (2017) - 2016
- [c1]Shunxing Bao, Joe Porter, Aniruddha S. Gokhale:
Reasoning for CPS Education Using Surrogate Simulation Models. COMPSAC 2016: 764-773
Coauthor Index
Leon Y. Cai
aka: Leon Yichen Cai
aka: Leon Yichen Cai
Aniruddha S. Gokhale
aka: Aniruddha Gokhale
aka: Aniruddha Gokhale
[j15] [c47] [c46] [i59] [i58] [i57] [i55] [i54] [i53] [i51] [i50] [j13] [j12] [c45] [c44] [c43] [c42] [c40] [c39] [i47] [i46] [i45] [i44] [i43] [i42] [i41] [i40] [i39] [i38] [i37] [i36] [i35] [i34] [i32] [j11] [j10] [j9] [c38] [c36] [c35] [c34] [c33] [c30] [i31] [i30] [i29] [i28] [i26] [i25] [i24] [i23] [i22] [j8] [j7] [c28] [c26] [c25] [c24] [c23] [c22] [c21] [c20] [i21] [i20] [i19] [j6] [j5] [c17] [i18] [i17] [i16] [i15] [j4] [j3] [j2] [c15] [c14] [c13] [c12] [c11] [i14] [i13] [i11] [i10] [j1] [c9] [c8] [c7] [c6] [c5] [c4] [i9] [i8] [i7] [i6] [i5] [i4] [i3] [i2] [i1]
[j15] [c47] [i59] [i58] [i57] [i56] [i54] [i52] [i51] [i50] [i49] [j14] [j13] [j12] [c45] [c44] [c43] [c42] [c41] [c40] [c39] [i47] [i46] [i45] [i44] [i43] [i41] [i37] [i35] [i34] [i33] [i32] [j11] [j10] [j9] [c38] [c36] [c35] [c34] [c33] [c32] [c31] [c30] [i31] [i30] [i29] [i28] [i27] [i26] [i25] [i24] [i23] [i22] [j8] [j7] [c28] [c26] [c25] [c23] [c22] [c21] [c20] [i21] [i20] [i19] [j6] [j5] [c18] [c17] [i17] [i16] [i15] [j4] [j3] [j2] [c15] [c14] [c13] [c12] [c11] [i14] [i13] [i11] [i10] [j1] [c9] [c8] [c7] [c6] [c5] [c4] [i9] [i8] [i7] [i6] [i5] [c3] [c2] [i4] [i3] [i2] [i1]
Lucas W. Remedios
aka: Lucas Walker Remedios
aka: Lucas Walker Remedios
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