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Siqi Sun
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Journal Articles
- 2024
- [j11]Hongtai Jing, Zhengtao Gao, Sheng Xu
, Tao Shen, Zhangzhi Peng, Shwai He, Tao You, Shuang Ye, Wei Lin, Siqi Sun
:
Accurate prediction of antibody function and structure using bio-inspired antibody language model. Briefings Bioinform. 25(4) (2024) - [j10]Liya Ma
, Chen Li, Siqi Sun, Shu Guo, Lihong Wang, Jianxin Li:
Privacy-preserving graph publishing with disentangled variational information bottleneck. Concurr. Comput. Pract. Exp. 36(10) (2024) - [j9]Kai Jia, Zhe Gao
, Ruicheng Ma
, Haoyu Chai, Siqi Sun:
An Adaptive Optimization Algorithm in LSTM for SOC Estimation Based on Improved Borges Derivative. IEEE Trans. Ind. Informatics 20(2): 1907-1919 (2024) - 2023
- [j8]Jiaxuan Han, Cheng Huang, Siqi Sun, Zhonglin Liu
, Jiayong Liu:
bjXnet: an improved bug localization model based on code property graph and attention mechanism. Autom. Softw. Eng. 30(1): 12 (2023) - [j7]Siqi Sun, Yongyu Wang
:
A novel deep learning automatic modulation classifier with fusion of multichannel information using GRU. EURASIP J. Wirel. Commun. Netw. 2023(1): 66 (2023) - [j6]Tianyu Wu
, Shizhu He
, Jingping Liu
, Siqi Sun
, Kang Liu
, Qing-Long Han
, Yang Tang
:
A Brief Overview of ChatGPT: The History, Status Quo and Potential Future Development. IEEE CAA J. Autom. Sinica 10(5): 1122-1136 (2023) - [j5]Siqi Sun
, Cheng Huang
, Tiejun Wu, Yi Shen
:
SecTKG: A Knowledge Graph for Open-Source Security Tools. Int. J. Intell. Syst. 2023: 1-22 (2023) - [j4]Siqi Sun
, Korin Richmond
, Hao Tang
:
Improving Seq2Seq TTS Frontends With Transcribed Speech Audio. IEEE ACM Trans. Audio Speech Lang. Process. 31: 1940-1952 (2023) - 2021
- [j3]Siqi Sun, Yining Qian, Ruoshi Zhang, Yanqi Wang, Xinran Li
:
An Improved Chinese String Comparator for Bloom Filter Based Privacy-Preserving Record Linkage. Entropy 23(8): 1091 (2021) - 2020
- [j2]Jun Liu
, Siqi Sun
, Yang Liu, Jiayang Guo
, Hailong Li, Yuan Gao, Jintao Sun, Jing Xiang:
A Novel MEGNet for Classification of High-Frequency Oscillations in Magnetoencephalography of Epileptic Patients. Complex. 2020: 9237808:1-9237808:9 (2020) - 2017
- [j1]Sheng Wang
, Siqi Sun
, Zhen Li, Renyu Zhang, Jinbo Xu
:
Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model. PLoS Comput. Biol. 13(1) (2017)
Conference and Workshop Papers
- 2024
- [c40]Zhi Jin, Sheng Xu, Xiang Zhang, Tianze Ling, Nanqing Dong, Wanli Ouyang, Zhiqiang Gao, Cheng Chang, Siqi Sun:
ContraNovo: A Contrastive Learning Approach to Enhance De Novo Peptide Sequencing. AAAI 2024: 144-152 - [c39]Linglin Jing, Sheng Xu, Yifan Wang, Yuzhe Zhou, Tao Shen, Zhigang Ji, Hui Fang, Zhen Li, Siqi Sun:
CrossBind: Collaborative Cross-Modal Identification of Protein Nucleic-Acid-Binding Residues. AAAI 2024: 2661-2669 - [c38]Xiutian Li, Siqi Sun, Rui Feng:
Causal Representation Learning via Counterfactual Intervention. AAAI 2024: 3234-3242 - [c37]Cheng Huang, Nannan Wang, Ziyan Wang, Siqi Sun, Lingzi Li, Junren Chen, Qianchong Zhao, Jiaxuan Han, Zhen Yang, Lei Shi:
DONAPI: Malicious NPM Packages Detector using Behavior Sequence Knowledge Mapping. USENIX Security Symposium 2024 - 2023
- [c36]Siqi Sun, Wenjie Ruan:
TextVerifier: Robustness Verification for Textual Classifiers with Certifiable Guarantees. ACL (Findings) 2023: 4362-4380 - 2022
- [c35]Yizhe Zhang, Siqi Sun, Xiang Gao, Yuwei Fang, Chris Brockett, Michel Galley, Jianfeng Gao, Bill Dolan:
RetGen: A Joint Framework for Retrieval and Grounded Text Generation Modeling. AAAI 2022: 11739-11747 - [c34]Shuohang Wang, Yichong Xu, Yuwei Fang, Yang Liu, Siqi Sun, Ruochen Xu, Chenguang Zhu, Michael Zeng:
Training Data is More Valuable than You Think: A Simple and Effective Method by Retrieving from Training Data. ACL (1) 2022: 3170-3179 - [c33]Yuwei Fang, Shuohang Wang, Yichong Xu, Ruochen Xu, Siqi Sun, Chenguang Zhu, Michael Zeng:
Leveraging Knowledge in Multilingual Commonsense Reasoning. ACL (Findings) 2022: 3237-3246 - [c32]Siqi Sun, Wei Ji, Liangfeng Tang, Xiaobo Zhang, Yuejie Zhang, Rui Feng:
An Interpretable Causal Approach for Bronchopulmonary Dysplasia Prediction. BIBM 2022: 1193-1200 - [c31]Yichong Xu, Chenguang Zhu, Shuohang Wang, Siqi Sun, Hao Cheng, Xiaodong Liu, Jianfeng Gao, Pengcheng He, Michael Zeng, Xuedong Huang:
Human Parity on CommonsenseQA: Augmenting Self-Attention with External Attention. IJCAI 2022: 2762-2768 - [c30]Siqi Sun, Yongqing Sun, Mitsuhiro Goto, Shigekuni Kondo, Dan Mikami, Susumu Yamamoto:
Motor Learning based on Presentation of a Tentative Goal. ICMR 2022: 601-607 - 2021
- [c29]Yuwei Fang, Shuohang Wang, Zhe Gan, Siqi Sun, Jingjing Liu:
FILTER: An Enhanced Fusion Method for Cross-lingual Language Understanding. AAAI 2021: 12776-12784 - [c28]Shuohang Wang, Luowei Zhou, Zhe Gan, Yen-Chun Chen, Yuwei Fang, Siqi Sun, Yu Cheng, Jingjing Liu:
Cluster-Former: Clustering-based Sparse Transformer for Question Answering. ACL/IJCNLP (Findings) 2021: 3958-3968 - [c27]Wei Ji, Weiwei Tian, Wenbin Pan, Siqi Sun, Hui Jiang, Rui Feng, Yuejie Zhang, Rui-Wei Zhao, Gang Jin:
CellDet: Dual-Task Cell Detection Network for IHC-Stained Image Analysis. BIBM 2021: 1343-1346 - [c26]Siqi Sun, Yen-Chun Chen, Linjie Li, Shuohang Wang, Yuwei Fang, Jingjing Liu:
LightningDOT: Pre-training Visual-Semantic Embeddings for Real-Time Image-Text Retrieval. NAACL-HLT 2021: 982-997 - 2020
- [c25]Yizhe Zhang, Siqi Sun
, Michel Galley, Yen-Chun Chen, Chris Brockett, Xiang Gao, Jianfeng Gao, Jingjing Liu, Bill Dolan:
DIALOGPT : Large-Scale Generative Pre-training for Conversational Response Generation. ACL (demo) 2020: 270-278 - [c24]Xiao Chen, Xin Li, Peng Chen, Yang Liu, Siqi Sun, Jun Liu:
Research on Android Application Detection based on static permission and Random Forest. CRC 2020: 181-184 - [c23]Qing Hou, Yang Liu, Jun Liu, Siqi Sun:
Epilepsy Detection Using Random Forest Classification Based on Locally Linear Embedding Algorithm. CRC 2020: 202-206 - [c22]Shuohang Wang, Yuwei Fang, Siqi Sun, Zhe Gan, Yu Cheng, Jingjing Liu, Jing Jiang
:
Cross-Thought for Sentence Encoder Pre-training. EMNLP (1) 2020: 412-421 - [c21]Siqi Sun, Zhe Gan, Yuwei Fang, Yu Cheng, Shuohang Wang, Jingjing Liu:
Contrastive Distillation on Intermediate Representations for Language Model Compression. EMNLP (1) 2020: 498-508 - [c20]Yuwei Fang, Siqi Sun, Zhe Gan, Rohit Pillai, Shuohang Wang, Jingjing Liu:
Hierarchical Graph Network for Multi-hop Question Answering. EMNLP (1) 2020: 8823-8838 - [c19]Chen Zhu, Yu Cheng, Zhe Gan, Siqi Sun, Tom Goldstein, Jingjing Liu:
FreeLB: Enhanced Adversarial Training for Natural Language Understanding. ICLR 2020 - 2019
- [c18]Siqi Sun
, Yu Cheng, Zhe Gan, Jingjing Liu:
Patient Knowledge Distillation for BERT Model Compression. EMNLP/IJCNLP (1) 2019: 4322-4331 - [c17]Kosuke Takahashi, Dan Mikami, Mariko Isogawa, Siqi Sun, Yoshinori Kusachi:
Easy Extrinsic Calibration of VR System and Multi-camera Based Marker-Less Motion Capture System. ISMAR Adjunct 2019: 83-88 - 2018
- [c16]Ran Liu, Mengxi Xie, Siqi Sun:
Reconstructing positive surveys from negative surveys by improved artificial immune network. SSCI 2018: 1116-1121 - 2017
- [c15]Yuancheng Zhu, Zhe Liu, Siqi Sun:
Learning Nonparametric Forest Graphical Models with Prior Information. AISTATS 2017: 672-680 - [c14]Takenori Obo
, Chiaki Kasuya, Siqi Sun, Naoyuki Kubota
:
Human-robot interaction based on cognitive bias to increase motivation for daily exercise. SMC 2017: 2945-2950 - 2016
- [c13]Takenori Obo
, Siqi Sun, Naoyuki Kubota
:
Smart Device Interlocked Robot Partner for Elderly Care. ICIRA (2) 2016: 36-47 - [c12]Kaixin Sui, Siqi Sun, Yousef Azzabi, Xiaoping Zhang, Youjian Zhao, Jilong Wang, Zimu Li, Dan Pei
:
Understanding the Impact of AP Density on WiFi Performance Through Real-World Deployment. LANMAN 2016: 1-6 - [c11]Sheng Wang
, Siqi Sun, Jinbo Xu:
AUC-Maximized Deep Convolutional Neural Fields for Protein Sequence Labeling. ECML/PKDD (2) 2016: 1-16 - [c10]Branislav Kveton, Hung Bui, Mohammad Ghavamzadeh, Georgios Theocharous, S. Muthukrishnan, Siqi Sun:
Graphical Model Sketch. ECML/PKDD (1) 2016: 81-97 - [c9]Siqi Sun, Takenori Obo
, Chu Kiong Loo, Naoyuki Kubota
:
Health Promotion Using Smart Device Interlocked Robot Partners for Elderly People. SCIS&ISIS 2016: 317-322 - [c8]Siqi Sun, Takahiro Takeda, Hisae Koyama, Naoyuki Kubota
:
Smart Device Interlocked Robot Partners for Information Support Systems in Sightseeing Guide. SCIS&ISIS 2016: 586-590 - 2015
- [c7]Siqi Sun, Hai Wang, Jinbo Xu:
Inferring Block Structure of Graphical Models in Exponential Families. AISTATS 2015 - [c6]Siqi Sun, Jianzhu Ma, Sheng Wang
, Jinbo Xu:
Predicting diverse M-best protein contact maps. BIBM 2015: 1287-1295 - [c5]Qingming Tang, Siqi Sun, Jinbo Xu:
Learning Scale-Free Networks by Dynamic Node Specific Degree Prior. ICML 2015: 2247-2255 - [c4]Siqi Sun, Mladen Kolar, Jinbo Xu:
Learning structured densities via infinite dimensional exponential families. NIPS 2015: 2287-2295 - 2014
- [c3]Siqi Sun, Yuancheng Zhu, Jinbo Xu:
Adaptive Variable Clustering in Gaussian Graphical Models. AISTATS 2014: 931-939 - [c2]Chengqi Yi, Yuanyuan Bao, Siqi Sun, Yibo Xue:
A novel method for information propagation model perceiving. ICNC 2014: 6-10 - 2012
- [c1]Siqi Sun, Shan Wang, Wenfeng Shen, Weimin Xu, Yanheng Zheng:
A Study of the Memory Wall within the Jacobi Iteration Method. HPCC-ICESS 2012: 964-969
Informal and Other Publications
- 2024
- [i29]Cheng Huang, Nannan Wang, Ziyan Wang, Siqi Sun, Lingzi Li, Junren Chen, Qianchong Zhao, Jiaxuan Han, Zhen Yang, Lei Shi:
DONAPI: Malicious NPM Packages Detector using Behavior Sequence Knowledge Mapping. CoRR abs/2403.08334 (2024) - [i28]Peng Zhou, Jianmin Wang, Chunyan Li, Zixu Wang, Yiping Liu, Siqi Sun, Jianxin Lin, Longyue Wang, Xiangxiang Zeng:
Instruction Multi-Constraint Molecular Generation Using a Teacher-Student Large Language Model. CoRR abs/2403.13244 (2024) - [i27]Yi Dong, Ronghui Mu, Yanghao Zhang, Siqi Sun, Tianle Zhang, Changshun Wu, Gaojie Jin, Yi Qi, Jinwei Hu, Jie Meng, Saddek Bensalem, Xiaowei Huang:
Safeguarding Large Language Models: A Survey. CoRR abs/2406.02622 (2024) - [i26]Yuchen Ren, Zhiyuan Chen, Lifeng Qiao, Hongtai Jing, Yuchen Cai, Sheng Xu, Peng Ye, Xinzhu Ma, Siqi Sun, Hongliang Yan, Dong Yuan, Wanli Ouyang, Xihui Liu:
BEACON: Benchmark for Comprehensive RNA Tasks and Language Models. CoRR abs/2406.10391 (2024) - 2023
- [i25]Zhongju Yuan, Tao Shen, Sheng Xu, Leiye Yu, Ruobing Ren, Siqi Sun:
AF2-Mutation: Adversarial Sequence Mutations against AlphaFold2 on Protein Tertiary Structure Prediction. CoRR abs/2305.08929 (2023) - [i24]Jiaqi Miao
, Siqi Sun:
Design, Actuation, and Functionalization of Untethered Soft Magnetic Robots with Life-Like Motions: A Review. CoRR abs/2305.17734 (2023) - [i23]Le Zhang, Jiayang Chen, Tao Shen, Yu Li, Siqi Sun:
Enhancing the Protein Tertiary Structure Prediction by Multiple Sequence Alignment Generation. CoRR abs/2306.01824 (2023) - [i22]Zhi Jin, Sheng Xu, Xiang Zhang, Tianze Ling, Nanqing Dong, Wanli Ouyang, Zhiqiang Gao, Cheng Chang
, Siqi Sun:
ContraNovo: A Contrastive Learning Approach to Enhance De Novo Peptide Sequencing. CoRR abs/2312.11584 (2023) - 2022
- [i21]Shuohang Wang, Yichong Xu, Yuwei Fang, Yang Liu, Siqi Sun, Ruochen Xu, Chenguang Zhu, Michael Zeng:
Training Data is More Valuable than You Think: A Simple and Effective Method by Retrieving from Training Data. CoRR abs/2203.08773 (2022) - [i20]Tao Shen, Zhihang Hu, Zhangzhi Peng, Jiayang Chen, Peng Xiong, Liang Hong, Liangzhen Zheng, Yixuan Wang
, Irwin King
, Sheng Wang, Siqi Sun, Yu Li:
E2Efold-3D: End-to-End Deep Learning Method for accurate de novo RNA 3D Structure Prediction. CoRR abs/2207.01586 (2022) - 2021
- [i19]Siqi Sun, Yen-Chun Chen, Linjie Li, Shuohang Wang, Yuwei Fang, Jingjing Liu:
LightningDOT: Pre-training Visual-Semantic Embeddings for Real-Time Image-Text Retrieval. CoRR abs/2103.08784 (2021) - [i18]Yizhe Zhang, Siqi Sun, Xiang Gao, Yuwei Fang, Chris Brockett, Michel Galley, Jianfeng Gao, Bill Dolan:
Joint Retrieval and Generation Training for Grounded Text Generation. CoRR abs/2105.06597 (2021) - [i17]Yuwei Fang, Shuohang Wang, Yichong Xu, Ruochen Xu, Siqi Sun, Chenguang Zhu, Michael Zeng:
Leveraging Knowledge in Multilingual Commonsense Reasoning. CoRR abs/2110.08462 (2021) - [i16]Yichong Xu, Chenguang Zhu, Shuohang Wang, Siqi Sun, Hao Cheng, Xiaodong Liu, Jianfeng Gao, Pengcheng He, Michael Zeng, Xuedong Huang:
Human Parity on CommonsenseQA: Augmenting Self-Attention with External Attention. CoRR abs/2112.03254 (2021) - 2020
- [i15]Siqi Sun:
Unsupervised and Supervised Structure Learning for Protein Contact Prediction. CoRR abs/2009.00133 (2020) - [i14]Yuwei Fang, Shuohang Wang, Zhe Gan, Siqi Sun, Jingjing Liu:
FILTER: An Enhanced Fusion Method for Cross-lingual Language Understanding. CoRR abs/2009.05166 (2020) - [i13]Yuwei Fang, Shuohang Wang, Zhe Gan, Siqi Sun, Jingjing Liu:
Accelerating Real-Time Question Answering via Question Generation. CoRR abs/2009.05167 (2020) - [i12]Shuohang Wang, Luowei Zhou, Zhe Gan, Yen-Chun Chen, Yuwei Fang, Siqi Sun, Yu Cheng, Jingjing Liu:
Cluster-Former: Clustering-based Sparse Transformer for Long-Range Dependency Encoding. CoRR abs/2009.06097 (2020) - [i11]Siqi Sun, Zhe Gan, Yu Cheng, Yuwei Fang, Shuohang Wang, Jingjing Liu:
Contrastive Distillation on Intermediate Representations for Language Model Compression. CoRR abs/2009.14167 (2020) - [i10]Shuohang Wang, Yuwei Fang, Siqi Sun, Zhe Gan, Yu Cheng, Jing Jiang, Jingjing Liu:
Cross-Thought for Sentence Encoder Pre-training. CoRR abs/2010.03652 (2020) - 2019
- [i9]Siqi Sun, Yu Cheng, Zhe Gan, Jingjing Liu:
Patient Knowledge Distillation for BERT Model Compression. CoRR abs/1908.09355 (2019) - [i8]Chen Zhu, Yu Cheng, Zhe Gan, Siqi Sun, Tom Goldstein, Jingjing Liu:
FreeLB: Enhanced Adversarial Training for Language Understanding. CoRR abs/1909.11764 (2019) - [i7]Yizhe Zhang, Siqi Sun, Michel Galley, Yen-Chun Chen, Chris Brockett, Xiang Gao, Jianfeng Gao, Jingjing Liu, Bill Dolan:
DialoGPT: Large-Scale Generative Pre-training for Conversational Response Generation. CoRR abs/1911.00536 (2019) - [i6]Yuwei Fang, Siqi Sun, Zhe Gan, Rohit Pillai, Shuohang Wang, Jingjing Liu:
Hierarchical Graph Network for Multi-hop Question Answering. CoRR abs/1911.03631 (2019) - 2016
- [i5]Branislav Kveton, Hung Bui, Mohammad Ghavamzadeh, Georgios Theocharous, S. Muthukrishnan, Siqi Sun:
Graphical Model Sketch. CoRR abs/1602.03105 (2016) - [i4]Sheng Wang, Siqi Sun, Zhen Li, Renyu Zhang, Jinbo Xu:
Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model. CoRR abs/1609.00680 (2016) - 2015
- [i3]Qingming Tang, Siqi Sun, Chao Yang, Jinbo Xu:
Learning Scale Free Network by Node Specific Degree Prior. CoRR abs/1503.02129 (2015) - [i2]Yuancheng Zhu, Zhe Liu, Siqi Sun:
Nonparametric Estimation of Scale-Free Graphical Models. CoRR abs/1511.03796 (2015) - [i1]Sheng Wang, Siqi Sun, Jinbo Xu:
AUC-maximized Deep Convolutional Neural Fields for Sequence Labeling. CoRR abs/1511.05265 (2015)
Coauthor Index
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