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Journal Articles
- 2017
[j4]Xi Chen, Xu Shi
, Leena Hilakivi-Clarke, Ayesha N. Shajahan-Haq, Robert Clarke, Jianhua Xuan:
PSSV: a novel pattern-based probabilistic approach for somatic structural variation identification. Bioinform. 33(2): 177-183 (2017)- 2015
- [j3]Xu Shi, Robert O. Barnes, Li Chen, Ayesha N. Shajahan-Haq, Leena Hilakivi-Clarke, Robert Clarke, Yue Joseph Wang, Jianhua Xuan:
BMRF-Net: a software tool for identification of protein interaction subnetworks by a bagging Markov random field-based method. Bioinform. 31(14): 2412-2414 (2015) - 2013
- [j2]Xu Shi, Jinghua Gu, Xi Chen, Ayesha N. Shajahan, Leena Hilakivi-Clarke, Robert Clarke, Jianhua Xuan:
mAPC-GibbsOS: an integrated approach for robust identification of gene regulatory networks. BMC Syst. Biol. 7(S-5): S4 (2013) - [j1]Xi Chen, Jianhua Xuan, Chen Wang, Ayesha N. Shajahan, Rebecca B. Riggins, Robert Clarke:
Reconstruction of Transcriptional Regulatory Networks by Stability-Based Network Component Analysis. IEEE ACM Trans. Comput. Biol. Bioinform. 10(6): 1347-1358 (2013)
Conference and Workshop Papers
- 2014
- [c6]Xi Chen, Xu Shi, Ayesha N. Shajahan-Haq, Leena Hilakivi-Clarke, Robert Clarke, Jianhua Xuan:
Statistical Identification of Co-regulatory Gene Modules using Multiple ChIP-Seq Experiments. BIOINFORMATICS 2014: 109-116 - [c5]Xi Chen, Xu Shi, Ayesha N. Shajahan, Leena Hilakivi-Clarke, Robert Clarke, Jianhua Xuan:
BSSV: Bayesian based somatic structural variation identification with whole genome DNA-seq data. EMBC 2014: 3937-3940 - 2013
- [c4]Jinghua Gu, Jianhua Xuan, Xiao Wang, Ayesha N. Shajahan, Leena Hilakivi-Clarke, Robert Clarke:
Reconstructing transcriptional regulatory networks by probabilistic network component analysis. BCB 2013: 96 - [c3]Xi Chen, Jianhua Xuan, Xu Shi, Ayesha N. Shajahan-Haq, Leena Hilakivi-Clarke, Robert Clarke:
A novel statistical approach to identify co-regulatory gene modules. BIBM 2013: 16-18 - 2012
- [c2]Xiao Wang, Jinghua Gu, Jianhua Xuan, Ayesha N. Shajahan, Robert Clarke, Li Chen:
Sampling-Based Subnetwork Identification from Microarray Data and Protein-Protein Interaction Network. ICMLA (2) 2012: 158-163 - [c1]Xi Chen, Chen Wang, Ayesha N. Shajahan, Rebecca B. Riggins, Robert Clarke, Jianhua Xuan:
Reconstruction of Transcription Regulatory Networks by Stability-Based Network Component Analysis. ISBRA 2012: 36-47
Coauthor Index
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