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Laurent Gatto
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- affiliation: UCLouvain, Brussels, Belgium
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Journal Articles
- 2024
- [j11]Philippe Hauchamps, Babak Bayat, Simon Delandre, Mehdi Hamrouni, Marie Toussaint, Stephane Temmerman, Dan Lin, Laurent Gatto:
CytoPipeline and CytoPipelineGUI: a Bioconductor R package suite for building and visualizing automated pre-processing pipelines for flow cytometry data. BMC Bioinform. 25(1): 80 (2024) - 2023
- [j10]Kelly B. Eckenrode
, Dario Righelli
, Marcel Ramos
, Ricard Argelaguet, Christophe Vanderaa
, Ludwig Geistlinger, Aedín C. Culhane
, Laurent Gatto
, Vincent J. Carey, Martin Morgan
, Davide Risso, Levi Waldron:
Curated single cell multimodal landmark datasets for R/Bioconductor. PLoS Comput. Biol. 19(8) (2023) - 2020
- [j9]Oliver M. Crook
, Aikaterini Geladaki
, Daniel J. H. Nightingale, Owen L. Vennard
, Kathryn S. Lilley, Laurent Gatto
, Paul D. W. Kirk
:
A semi-supervised Bayesian approach for simultaneous protein sub-cellular localisation assignment and novelty detection. PLoS Comput. Biol. 16(11): 1008288 (2020) - 2019
- [j8]Johannes Rainer
, Laurent Gatto
, Christian X. Weichenberger
:
ensembldb: an R package to create and use Ensembl-based annotation resources. Bioinform. 35(17): 3151-3153 (2019) - 2018
- [j7]Oliver M. Crook
, Claire M. Mulvey
, Paul D. W. Kirk
, Kathryn S. Lilley
, Laurent Gatto
:
A Bayesian mixture modelling approach for spatial proteomics. PLoS Comput. Biol. 14(11) (2018) - 2017
- [j6]Samuel Wieczorek
, Florence Combes
, Cosmin Lazar, Quentin Giai Gianetto, Laurent Gatto, Alexia Dorffer, Anne-Marie Hesse
, Yohann Couté
, Myriam Ferro
, Christophe Bruley, Thomas Burger
:
DAPAR & ProStaR: software to perform statistical analyses in quantitative discovery proteomics. Bioinform. 33(1): 135-136 (2017) - [j5]Felipe da Veiga Leprevost
, Björn A. Grüning
, Saulo Aflitos
, Hannes L. Röst
, Julian Uszkoreit
, Harald Barsnes
, Marc Vaudel
, Pablo A. Moreno
, Laurent Gatto, Jonas Weber, Mingze Bai, Rafael C. Jiménez
, Timo Sachsenberg, Julianus Pfeuffer, Roberto Vera Alvarez
, Johannes Griss
, Alexey I. Nesvizhskii, Yasset Pérez-Riverol
:
BioContainers: an open-source and community-driven framework for software standardization. Bioinform. 33(16): 2580-2582 (2017) - 2016
- [j4]Lisa M. Breckels, Sean B. Holden, David Wojnar, Claire M. Mulvey
, Andy Christoforou
, Arnoud Groen, Matthew W. B. Trotter
, Oliver Kohlbacher, Kathryn S. Lilley, Laurent Gatto
:
Learning from Heterogeneous Data Sources: An Application in Spatial Proteomics. PLoS Comput. Biol. 12(5) (2016) - [j3]Yasset Pérez-Riverol
, Laurent Gatto
, Rui Wang, Timo Sachsenberg, Julian Uszkoreit
, Felipe da Veiga Leprevost
, Christian Fufezan, Tobias Ternent
, Stephen J. Eglen
, Daniel S. Katz
, Tom J. Pollard
, Alexander Konovalov
, Robert M. Flight
, Kai Blin
, Juan Antonio Vizcaíno
:
Ten Simple Rules for Taking Advantage of Git and GitHub. PLoS Comput. Biol. 12(7) (2016) - 2014
- [j2]Laurent Gatto
, Lisa M. Breckels, Samuel Wieczorek
, Thomas Burger
, Kathryn S. Lilley:
Mass-spectrometry-based spatial proteomics data analysis using pRoloc and pRolocdata. Bioinform. 30(9): 1322-1324 (2014) - 2012
- [j1]Laurent Gatto
, Kathryn S. Lilley:
MSnbase-an R/Bioconductor package for isobaric tagged mass spectrometry data visualization, processing and quantitation. Bioinform. 28(2): 288-289 (2012)
Parts in Books or Collections
- 2016
- [p1]Lisa M. Breckels, Sebastian Gibb
, Vladislav A. Petyuk, Laurent Gatto:
Chapter 14. R for Proteomics. Proteome Informatics 2016: 321-364
Informal and Other Publications
- 2021
- [i3]Theo Killian, Laurent Gatto
:
Exploiting the DepMap cancer dependency data using the depmap R package. F1000Research 10: 416 (2021) - 2019
- [i2]Oliver M. Crook, Lisa M. Breckels
, Kathryn S. Lilley, Paul D. W. Kirk, Laurent Gatto
:
A Bioconductor workflow for the Bayesian analysis of spatial proteomics. F1000Research 8: 446 (2019) - 2016
- [i1]Lisa M. Breckels
, Claire M. Mulvey, Kathryn S. Lilley, Laurent Gatto:
A Bioconductor workflow for processing and analysing spatial proteomics data. F1000Research 5: 2926 (2016)
Coauthor Index
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