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2020 – today
- 2023
[j6]Eleftheria Kontou, Axel Walter, Oliver Alka, Julianus Pfeuffer, Timo Sachsenberg, Omkar S. Mohite
, Matin Nuhamunada, Oliver Kohlbacher, Tilmann Weber:
UmetaFlow: an untargeted metabolomics workflow for high-throughput data processing and analysis. J. Cheminformatics 15(1): 52 (2023)- 2022
- [j5]Husen M. Umer, Enrique Audain, Yafeng Zhu, Julianus Pfeuffer, Timo Sachsenberg, Janne Lehtiö, Rui Mamede Branca, Yasset Pérez-Riverol:
Generation of ENSEMBL-based proteogenomics databases boosts the identification of non-canonical peptides. Bioinform. 38(5): 1470-1472 (2022) - 2021
- [j4]Verônica R. de Melo Costa, Julianus Pfeuffer, Annita Louloupi, Ulf A. V. Ørom, Rosario M. Piro:
SPLICE-q: a Python tool for genome-wide quantification of splicing efficiency. BMC Bioinform. 22(1): 368 (2021)
2010 – 2019
- 2019
- [j3]Yasset Pérez-Riverol, Attila Csordas, Jingwen Bai, Manuel Bernal Llinares, Suresh Hewapathirana, Deepti Jaiswal Kundu, Avinash Inuganti, Johannes Griss, Gerhard Mayer, Martin Eisenacher, Enrique Pérez, Julian Uszkoreit, Julianus Pfeuffer, Timo Sachsenberg, Sule Yilmaz, Shivani Tiwary, Jürgen Cox, Enrique Audain, Mathias Walzer, Andrew F. Jarnuczak, Tobias Ternent, Alvis Brazma, Juan Antonio Vizcaíno:
The PRIDE database and related tools and resources in 2019: improving support for quantification data. Nucleic Acids Res. 47(Database-Issue): D442-D450 (2019) - 2017
- [j2]Felipe da Veiga Leprevost, Björn A. Grüning, Saulo Aflitos, Hannes L. Röst, Julian Uszkoreit, Harald Barsnes, Marc Vaudel, Pablo A. Moreno, Laurent Gatto, Jonas Weber, Mingze Bai, Rafael C. Jiménez, Timo Sachsenberg, Julianus Pfeuffer, Roberto Vera Alvarez, Johannes Griss, Alexey I. Nesvizhskii, Yasset Pérez-Riverol:
BioContainers: an open-source and community-driven framework for software standardization. Bioinform. 33(16): 2580-2582 (2017) - 2016
- [j1]Julianus Pfeuffer, Oliver Serang:
A Bounded p-norm Approximation of Max-Convolution for Sub-Quadratic Bayesian Inference on Additive Factors. J. Mach. Learn. Res. 17: 36:1-36:39 (2016) - 2015
- [i1]Julianus Pfeuffer, Oliver Serang:
A more accurate numerical max-convolution method for sub-quadratic Bayesian inference with additive factors. CoRR abs/1505.07519 (2015)
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