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Vincent J. Carey
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2020 – today
- 2024
- [j18]Michele Gentili, Kimberly Glass, Enrico Maiorino, Brian D. Hobbs, Zhonghui Xu, Peter J. Castaldi, Michael H. Cho, Craig P. Hersh, Dandi Qiao, Jarrett D. Morrow, Vincent J. Carey, John Platig, Edwin K. Silverman:
Partial correlation network analysis identifies coordinated gene expression within a regional cluster of COPD genome-wide association signals. PLoS Comput. Biol. 20(10): 1011079 (2024) - 2023
- [j17]Kelly B. Eckenrode, Dario Righelli, Marcel Ramos, Ricard Argelaguet, Christophe Vanderaa, Ludwig Geistlinger, Aedín C. Culhane, Laurent Gatto, Vincent J. Carey, Martin Morgan, Davide Risso, Levi Waldron:
Curated single cell multimodal landmark datasets for R/Bioconductor. PLoS Comput. Biol. 19(8) (2023) - 2021
- [j16]Ludwig Geistlinger, Gergely Csaba, Mara Santarelli, Marcel Ramos, Lucas Schiffer, Nitesh Turaga, Charity W. Law, Sean Davis, Vincent J. Carey, Martin Morgan, Ralf Zimmer, Levi Waldron:
Toward a gold standard for benchmarking gene set enrichment analysis. Briefings Bioinform. 22(1): 545-556 (2021)
2010 – 2019
- 2019
- [j15]Rose Du, Vincent J. Carey, Scott T. Weiss:
deconvSeq: deconvolution of cell mixture distribution in sequencing data. Bioinform. 35(24): 5095-5102 (2019) - [i3]Shweta Gopaulakrishnan, Samuela Pollack, BJ Stubbs, Hervé Pagès, John Readey, Sean Davis, Levi Waldron, Martin Morgan, Vincent J. Carey:
restfulSE: A semantically rich interface for cloud-scale genomics with Bioconductor. F1000Research 8: 21 (2019) - [i2]Shian Su, Vincent J. Carey, Lori A. Shepherd, Matthew E. Ritchie, Martin T. Morgan, Sean Davis:
BiocPkgTools: Toolkit for mining the Bioconductor package ecosystem. F1000Research 8: 752 (2019) - 2017
- [i1]Benjamin J. Stubbs, Keith Frankston, Marcel Ramos, Nancy Laranjo, Frank M. Sacks, Vincent J. Carey:
ogttMetrics: Data structures and algorithms for oral glucose tolerance tests. F1000Research 6: 684- (2017) - 2016
- [j14]Lavanya Kannan, Marcel Ramos, Angela Re, Nehme Hachem, Zhaleh Safikhani, Deena M. A. Gendoo, Sean Davis, David Gomez-Cabrero, Robert Castelo, Kasper D. Hansen, Vincent J. Carey, Martin Morgan, Aedín C. Culhane, Benjamin Haibe-Kains, Levi Waldron:
Public data and open source tools for multi-assay genomic investigation of disease. Briefings Bioinform. 17(4): 603-615 (2016) - 2014
- [j13]Valerie Obenchain, Michael F. Lawrence, Vincent J. Carey, Stephanie M. Gogarten, Paul Shannon, Martin Morgan:
VariantAnnotation: a Bioconductor package for exploration and annotation of genetic variants. Bioinform. 30(14): 2076-2078 (2014) - 2013
- [j12]Michael F. Lawrence, Wolfgang Huber, Hervé Pagès, Patrick Aboyoun, Marc Carlson, Robert Gentleman, Martin T. Morgan, Vincent J. Carey:
Software for Computing and Annotating Genomic Ranges. PLoS Comput. Biol. 9(8) (2013) - 2011
- [j11]Jen-hwa Chu, Ross Lazarus, Vincent J. Carey, Benjamin A. Raby:
Quantifying differential gene connectivity between disease states for objective identification of disease-relevant genes. BMC Syst. Biol. 5: 89 (2011) - [r1]Robert Gentleman, Wolfgang Huber, Vincent J. Carey:
R Language. International Encyclopedia of Statistical Science 2011: 1159-1161
2000 – 2009
- 2009
- [j10]Adam L. Asare, Zhong Gao, Vincent J. Carey, Richard Wang, Vicki Seyfert-Margolis:
Power enhancement via multivariate outlier testing with gene expression arrays. Bioinform. 25(1): 48-53 (2009) - [j9]Vincent J. Carey, Adam R. Davis, Michael F. Lawrence, Robert Gentleman, Benjamin A. Raby:
Data structures and algorithms for analysis of genetics of gene expression with Bioconductor: GGtools 3.x. Bioinform. 25(11): 1447-1448 (2009) - [j8]Michael F. Lawrence, Robert Gentleman, Vincent J. Carey:
rtracklayer: an R package for interfacing with genome browsers. Bioinform. 25(14): 1841-1842 (2009) - [j7]Rose Du, Kelan Tantisira, Vincent J. Carey, Soumyaroop Bhattacharya, Stephanie Metje, Alvin T. Kho, Barbara J. Klanderman, Roger Gaedigk, Ross Lazarus, Thomas J. Mariani, J. Steven Leeder, Scott T. Weiss:
Platform dependence of inference on gene-wise and gene-set involvement in human lung development. BMC Bioinform. 10 (2009) - [j6]Jen-hwa Chu, Scott T. Weiss, Vincent J. Carey, Benjamin A. Raby:
A graphical model approach for inferring large-scale networks integrating gene expression and genetic polymorphism. BMC Syst. Biol. 3: 55 (2009) - [c2]Vincent J. Carey, Robert Gentleman:
Interpreting Genetics Of Gene Expression: Integrative Architecture In Bioconductor. Pacific Symposium on Biocomputing 2009: 380-390 - 2008
- [c1]Vincent J. Carey, Jeff Gentry, Deepayan Sarkar, Robert Gentleman, Srini Ramaswamy:
SGDI: System for Genomic Data Integration. Pacific Symposium on Biocomputing 2008: 141-152 - 2007
- [j5]Vincent J. Carey, Martin Morgan, Seth Falcon, Ross Lazarus, Robert Gentleman:
GGtools: analysis of genetics of gene expression in bioconductor. Bioinform. 23(4): 522-523 (2007) - [j4]Wolfgang Huber, Vincent J. Carey, Li Long, Seth Falcon, Robert Gentleman:
Graphs in molecular biology. BMC Bioinform. 8(S-6) (2007) - [j3]Adi L. Tarca, Vincent J. Carey, Xue-wen Chen, Roberto Romero, Sorin Draghici:
Machine Learning and Its Applications to Biology. PLoS Comput. Biol. 3(6) (2007) - 2005
- [j2]Vincent J. Carey, Jeff Gentry, Elizabeth Whalen, Robert Gentleman:
Network structures and algorithms in Bioconductor. Bioinform. 21(1): 135-136 (2005) - 2003
- [j1]Jianhua Zhang, Vincent J. Carey, Robert Gentleman:
An extensible application for assembling annotation for genomic data. Bioinform. 19(1): 155-156 (2003)
Coauthor Index
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