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Proteome Informatics, 2016
- Conrad Bessant:
Proteome Informatics. New Developments in Mass Spectrometry 5, Royal Society of Chemistry 2016, ISBN 978-1-78262-428-8 - Conrad Bessant:
Chapter 1. Introduction to Proteome Informatics. 1-14 - Bin Ma:
Chapter 2. De novo Peptide Sequencing. 15-38 - Brian Netzel, Surendra Dasari:
Chapter 3. Peptide Spectrum Matching via Database Search and Spectral Library Search. 39-68 - James C. Wright
, Jyoti Choudhary
:
Chapter 4. PSM Scoring and Validation. 69-92 - Andrew R. Jones
:
Chapter 5. Protein Inference and Grouping. 93-115 - Rune Matthiesen, Ana Sofia Carvalho
:
CHAPTER 6. Identification and Localization of Post-Translational Modifications by High-Resolution Mass Spectrometry. 116-132 - Hanqing Liao, Alexander Phillips
, Andris Jankevics
, Andrew W. Dowsey
:
Chapter 7. Algorithms for MS1-Based Quantitation. 133-154 - Marc Vaudel:
Chapter 8. MS2-Based Quantitation. 155-177 - Birgit Schilling
, Brendan MacLean, Jason M. Held, Bradford W. Gibson:
Chapter 9. Informatics Solutions for Selected Reaction Monitoring. 178-199 - Juan Antonio Vizcaíno, Simon Perkins, Andrew R. Jones
, Eric W. Deutsch:
Chapter 11. Data Formats of the Proteomics Standards Initiative. 229-258 - Lars Nilse:
Chapter 12. OpenMS: A Modular, Open-Source Workflow System for the Analysis of Quantitative Proteomics Data. 259-288 - Candace R. Guerrero, Pratik D. Jagtap
, James E. Johnson, Timothy J. Griffin
:
Chapter 13. Using Galaxy for Proteomics. 289-320 - Lisa M. Breckels, Sebastian Gibb
, Vladislav A. Petyuk, Laurent Gatto:
Chapter 14. R for Proteomics. 321-364 - Fawaz Ghali
, Andrew R. Jones
:
Chapter 15. Proteogenomics: Proteomics for Genome Annotation. 365-384 - Shyamasree Saha
, David A. Matthews, Conrad Bessant:
Chapter 16. Proteomics Informed by Transcriptomics. 385-405

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