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ORCIDPatterns, Volume 5
Volume 5, Number 1, January 2024
- Jingye Yang, Cong Liu, Wendy Deng, Da Wu, Chunhua Weng, Yunyun Zhou, Kai Wang
:
Enhancing phenotype recognition in clinical notes using large language models: PhenoBCBERT and PhenoGPT. 100887 - Vasileios C. Pezoulas, Fanis G. Kalatzis, Themis P. Exarchos, Andreas Goules, Athanasios G. Tzioufas, Dimitrios I. Fotiadis:
FHBF: Federated hybrid boosted forests with dropout rates for supervised learning tasks across highly imbalanced clinical datasets. 100893 - Feng Xiong, Peng Xie, Zuohan Zhao, Yiwei Li, Sujun Zhao, Linus Manubens-Gil, Lijuan Liu, Hanchuan Peng:
DSM: Deep sequential model for complete neuronal morphology representation and feature extraction. 100896
- Ahmad Nasimian, Saleena Younus, Özge Tatli, Emma U. Hammarlund, Kenneth J. Pienta, Lars Rönnstrand, Julhash U. Kazi:
AlphaML: A clear, legible, explainable, transparent, and elucidative binary classification platform for tabular data. 100897
- Weishen Pan, Zhenxing Xu, Suraj Rajendran, Fei Wang:
An adaptive federated learning framework for clinical risk prediction with electronic health records from multiple hospitals. 100898 - Jun Wen, Jue Hou, Clara-Lea Bonzel, Yihan Zhao, Victor M. Castro, Vivian S. Gainer, Dana Weisenfeld, Tianrun Cai, Yuk-Lam Ho, Vidul Ayakulangara Panickan, Lauren Costa, Chuan Hong, J. Michael Gaziano, Katherine P. Liao, Junwei Lu, Kelly Cho, Tianxi Cai:
LATTE: Label-efficient incident phenotyping from longitudinal electronic health records. 100906 - Fengda Zhang, Zitao Shuai, Kun Kuang, Fei Wu, Yueting Zhuang, Jun Xiao:
Unified fair federated learning for digital healthcare. 100907 - Arash Keshavarzi Arshadi, Milad Salem, Heather Karner, Kristle Garcia, Abolfazl Arab, Jiann-Shiun Yuan, Hani Goodarzi:
Functional microRNA-targeting drug discovery by graph-based deep learning. 100909
- Hanchuan Peng, Peng Xie, Feng Xiong:
Meet the authors: Hanchuan Peng, Peng Xie, and Feng Xiong. 100912
- Roel Roscam Abbing, Robert W. Gehl:
Shifting your research from X to Mastodon? Here's what you need to know. 100914 - Andrew L. Hufton:
Looking forward to the new year. 100916
Volume 5, Number 2, February 2024
- Li-Ju Wang, Michael Ning, Tapsya Nayak, Michael J. Kasper, Satdarshan P. Monga, Yufei Huang, Yidong Chen, Yu-Chiao Chiu:
shinyDeepDR: A user-friendly R Shiny app for predicting anti-cancer drug response using deep learning. 100894
- Jinge Wang, Runnan Cao, Puneeth N. Chakravarthula, Xin Li, Shuo Wang:
A critical period for developing face recognition. 100895 - Hyeontae Jo, Hyukpyo Hong, Hyung Ju Hwang, Won Chang, Jae Kyoung Kim:
Density physics-informed neural networks reveal sources of cell heterogeneity in signal transduction. 100899 - Michael R. Waters, Matthew Inkman, Kay Jayachandran, Roman M. Kowalchuk, Clifford Robinson, Julie K. Schwarz, S. Joshua Swamidass, Obi L. Griffith, Jeffrey J. Szymanski, Jin Zhang:
GAiN: An integrative tool utilizing generative adversarial neural networks for augmented gene expression analysis. 100910 - Yi Liu, Yuelei Zhang, Xiao Chang, Xiaoping Liu:
MDIC3: Matrix decomposition to infer cell-cell communication. 100911
- Suraj Rajendran, Weishen Pan, Mert R. Sabuncu, Yong Chen, Jiayu Zhou, Fei Wang:
Learning across diverse biomedical data modalities and cohorts: Challenges and opportunities for innovation. 100913
- Le Jiang, Liyan Ma, Tieyong Zeng, Shihui Ying:
UFPS: A unified framework for partially annotated federated segmentation in heterogeneous data distribution. 100917
- Upol Ehsan, Mark O. Riedl:
Social construction of XAI: Do we need one definition to rule them all? 100926
- Bingjie Yan, Danmin Cao, Xinlong Jiang, Yiqiang Chen, Weiwei Dai, Fan Dong, Wuliang Huang, Teng Zhang, Chenlong Gao, Qian Chen, Zhen Yan, Zhirui Wang:
FedEYE: A scalable and flexible end-to-end federated learning platform for ophthalmology. 100928 - David S. Goodsell, Shuchismita Dutta, Brian P. Hudson, Maria Voigt, Stephen K. Burley, Christine Zardecki:
Folding paper models of biostructures for outreach and education. 100931
Volume 5, Number 3, March 2024
- Zehua Jing, Qianhua Zhu, Linxuan Li, Yue Xie, Xinchao Wu, Qi Fang, Bolin Yang, Baojun Dai, Xun Xu, Hailin Pan, Yinqi Bai:
Spaco: A comprehensive tool for coloring spatial data at single-cell resolution. 100915 - Matthew J. Sniatynski, John A. Shepherd, Lynne R. Wilkens, D. Frank Hsu, Bruce S. Kristal:
The DIRAC framework: Geometric structure underlies roles of diversity and accuracy in combining classifiers. 100924 - Yang Li, Yizhong Wang, Cankun Wang, Anjun Ma, Qin Ma, Bingqiang Liu:
A weighted two-stage sequence alignment framework to identify motifs from ChIP-exo data. 100927
- Bo Qian, Hao Chen, Xiangning Wang, Zhouyu Guan, Tingyao Li, Yixiao Jin, Yilan Wu, Yang Wen, Haoxuan Che, Gitaek Kwon, Jaeyoung Kim, Sungjin Choi, Seoyoung Shin, Felix Krause, Markus Unterdechler, Junlin Hou, Rui Feng, Yihao Li, Mostafa El Habib Daho, Dawei Yang, Bin Sheng:
DRAC 2022: A public benchmark for diabetic retinopathy analysis on ultra-wide optical coherence tomography angiography images. 100929
- Georgios Rizos, Jenna Lawson, Simon Mitchell, Pranay Shah, Xin Wen, Cristina Banks-Leite, Robert M. Ewers, Björn W. Schuller:
Propagating variational model uncertainty for bioacoustic call label smoothing. 100932
- Jenna Kefeli, Nicholas P. Tatonetti:
TCGA-Reports: A machine-readable pathology report resource for benchmarking text-based AI models. 100933
- Leticia Márquez-Magaña:
Anti-deficit is anti-racist and transformative. 100934
- Valentin Liévin, Christoffer Egeberg Hother, Andreas Geert Motzfeldt, Ole Winther:
Can large language models reason about medical questions? 100943 - Brandon Theodorou, Lucas Glass, Cao Xiao, Jimeng Sun:
FRAMM: Fair ranking with missing modalities for clinical trial site selection. 100944 - Benjamin P. Danek, Mary B. Makarious, Anant Dadu, Dan Vitale, Paul Suhwan Lee, Andrew B. Singleton, Mike A. Nalls, Jimeng Sun, Faraz Faghri:
Federated learning for multi-omics: A performance evaluation in Parkinson's disease. 100945
- Yosra Magdi Mekki:
Physicians should build their own machine-learning models. 100948
- Georgios Rizos, Jenna L. Lawson, Björn W. Schuller:
Meet the authors: Georgios Rizos, Jenna L. Lawson, and Björn W. Schuller. 100952 - Alejandra Alvarado, Andrew L. Hufton:
From scraped to published. 100953
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