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Jaime I. Dávila
Person information
- affiliation: University of Washington, Seattle, WA, USA
- affiliation (former): Mayo Clinic, Health Sciences Research, Rochester, MN, USA
- affiliation (former): University of Connecticut, Department of Computer Science and Engineering, CT, USA
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2020 – today
- 2023
- [j7]Audrey Mitchell, Marco Ruiz, Soua Yang, Chen Wang, Jaime I. Dávila
:
Excerno: Using Mutational Signatures in Sequencing Data to Filter False Variants Caused by Clinical Archival. J. Comput. Biol. 30(4): 366-375 (2023) - 2021
- [j6]Tianshu Feng
, Jaime I. Dávila
, Yuanhang Liu, Sangdi Lin
, Shuai Huang
, Chen Wang
:
Semi-Supervised Topological Analysis for Elucidating Hidden Structures in High-Dimensional Transcriptome Datasets. IEEE ACM Trans. Comput. Biol. Bioinform. 18(4): 1620-1631 (2021) - [c8]Audrey Mitchell, Marco Ruiz, Soua Yang, Chen Wang
, Jaime I. Dávila
:
Excerno: Filtering Mutations Caused by the Clinical Archival Process in Sequencing Data. ICCABS 2021: 29-37
2010 – 2019
- 2018
- [p1]Sudha Balla, Jaime I. Dávila, Marius Nicolae, Sanguthevar Rajasekaran:
Approximation Algorithms for the Primer Selection, PlantedMotif Search, and Related Problems. Handbook of Approximation Algorithms and Metaheuristics (2) 2018 - 2017
- [c7]Jaime I. Dávila:
Challenges of using RNA-seq in the clinical setting. ICCABS 2017: 1 - 2015
- [c6]Mia D. Champion, Ryan A. Hlady, Huihuang Yan, Jared Evans, Jeff Nie, Jeong-Heon Lee, James M. Bogenberger, Kannabiran Nandakumar, Jaime I. Dávila, Raymond M. Moore, Asha A. Nair, Daniel R. O'Brien, Yuan-Xiao Zhu, K. Martin Kortüm, Tamas Ordog, Zhiguo Zhang, Richard W. Joseph, A. Keith Stewart, Jean-Pierre A. Kocher, Eric Jonasch, Keith D. Robertson, Raoul Tibes, Thai H. Ho:
Bioinformatics Strategies for Identifying Regions of Epigenetic Deregulation Associated with Aberrant Transcript Splicing and RNA-editing. BIOINFORMATICS 2015: 163-170 - 2014
- [j5]Chen Wang
, Jaime I. Dávila
, Saurabh Baheti, Aditya Bhagwate, Xue Wang, Jean-Pierre A. Kocher, Susan L. Slager, Andrew L. Feldman
, Anne J. Novak, James R. Cerhan, E. Aubrey Thompson, Yan W. Asmann:
RVboost: RNA-seq variants prioritization using a boosting method. Bioinform. 30(23): 3414-3416 (2014) - [j4]Krishna R. Kalari
, Asha A. Nair, Jaysheel D. Bhavsar, Daniel R. O'Brien, Jaime I. Dávila
, Matthew A. Bockol, Jinfu J. Nie, Xiaojia Tang
, Saurabh Baheti, Jay B. Doughty, Sumit Middha
, Hugues Sicotte, E. Aubrey Thompson, Yan W. Asmann, Jean-Pierre A. Kocher:
MAP-RSeq: Mayo Analysis Pipeline for RNA sequencing. BMC Bioinform. 15: 224 (2014)
2000 – 2009
- 2007
- [j3]Jaime I. Dávila
, Sudha Balla, Sanguthevar Rajasekaran:
Fast and Practical Algorithms for Planted (l, d) Motif Search. IEEE ACM Trans. Comput. Biol. Bioinform. 4(4): 544-552 (2007) - [c5]Jaime I. Dávila
, Sudha Balla, Sanguthevar Rajasekaran:
Fast Algorithms for Selecting Specific siRNA in Complete mRNA Data. WABI 2007: 302-309 - [r2]Sudha Balla, Jaime I. Dávila
, Sanguthevar Rajasekaran:
Approximation Algorithms for the Primer Selection, Planted Motif Search, and Related Problems. Handbook of Approximation Algorithms and Metaheuristics 2007 - [r1]Sanguthevar Rajasekaran, Jaime I. Dávila:
Randomized Packet Routing, Selection, and Sorting on the POPS Network. Handbook of Parallel Computing 2007 - 2006
- [c4]Jaime I. Dávila
, Sanguthevar Rajasekaran:
Extending Pattern Branching to Handle Challenging Instances. BIBE 2006: 65-69 - [c3]Jaime I. Dávila
, Sudha Balla, Sanguthevar Rajasekaran:
Space and Time Efficient Algorithms for Planted Motif Search. International Conference on Computational Science (2) 2006: 822-829 - 2005
- [j2]Jaime I. Dávila
, Sanguthevar Rajasekaran:
Randomized Sorting On The Pops Network. Int. J. Found. Comput. Sci. 16(1): 105-116 (2005) - [j1]Sanguthevar Rajasekaran, Jaime I. Dávila
:
Packet routing and selection on the POPS network. J. Parallel Distributed Comput. 65(8): 927-933 (2005) - 2004
- [c2]Jaime I. Dávila, Sanguthevar Rajasekaran:
Randomized Sorting on the POPS Network. PDCS 2004: 45-50 - [c1]Sanguthevar Rajasekaran, Jaime I. Dávila:
A Fundamental Problem in Computer and Communication. ICPADS 2004: 81-
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