- Jingshu Bi, Yuanjie Zheng, Chongjing Wang, Yanhui Ding:
An Attention Based Bidirectional LSTM Method to Predict the Binding of TCR and Epitope. IEEE ACM Trans. Comput. Biol. Bioinform. 19(6): 3272-3280 (2022) - Pietro Bongini, Neri Niccolai, Alfonso Trezza, Guido Mangiavacchi, Annalisa Santucci, Ottavia Spiga, Monica Bianchini, Simone Gardini:
Structural Bioinformatic Survey of Protein-Small Molecule Interfaces Delineates the Role of Glycine in Surface Pocket Formation. IEEE ACM Trans. Comput. Biol. Bioinform. 19(3): 1881-1886 (2022) - Vladimír Boza, Peter Peresíni, Brona Brejová, Tomás Vinar:
Dynamic Pooling Improves Nanopore Base Calling Accuracy. IEEE ACM Trans. Comput. Biol. Bioinform. 19(6): 3416-3424 (2022) - Lien A. Bui, Dacosta Yeboah, Louis Steinmeister, Sima Azizi, Daniel B. Hier, Donald C. Wunsch, Gayla R. Olbricht, Tayo Obafemi-Ajayi:
Heterogeneity in Blood Biomarker Trajectories After Mild TBI Revealed by Unsupervised Learning. IEEE ACM Trans. Comput. Biol. Bioinform. 19(3): 1365-1378 (2022) - Manuel Cáceres, Brendan Mumey, Edin Husic, Romeo Rizzi, Massimo Cairo, Kristoffer Sahlin, Alexandru I. Tomescu:
Safety in Multi-Assembly via Paths Appearing in All Path Covers of a DAG. IEEE ACM Trans. Comput. Biol. Bioinform. 19(6): 3673-3684 (2022) - Zhipeng Cai, Min Li, Pavel Skums:
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications. IEEE ACM Trans. Comput. Biol. Bioinform. 19(1): 166-167 (2022) - Zhipeng Cai, Giri Narasimhan, Pavel Skums:
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications. IEEE ACM Trans. Comput. Biol. Bioinform. 19(1): 207-208 (2022) - Barbara Di Camillo, Giuseppe Nicosia:
Guest Editorial: Deep Learning For Genomics. IEEE ACM Trans. Comput. Biol. Bioinform. 19(1): 95-96 (2022) - Ben Cao, Xue Ii, Xiaokang Zhang, Bin Wang, Qiang Zhang, Xiaopeng Wei:
Designing Uncorrelated Address Constrain for DNA Storage by DMVO Algorithm. IEEE ACM Trans. Comput. Biol. Bioinform. 19(2): 866-877 (2022) - Jason L. Causey, Keyu Li, Xianghao Chen, Wei Dong, Karl Walker, Jake A. Qualls, Jonathan Stubblefield, Jason H. Moore, Yuanfang Guan, Xiuzhen Huang:
Spatial Pyramid Pooling With 3D Convolution Improves Lung Cancer Detection. IEEE ACM Trans. Comput. Biol. Bioinform. 19(2): 1165-1172 (2022) - Jason L. Causey, Jonathan Stubblefield, Jake A. Qualls, Jennifer Fowler, Lingrui Cai, Karl Walker, Yuanfang Guan, Xiuzhen Huang:
An Ensemble of U-Net Models for Kidney Tumor Segmentation With CT Images. IEEE ACM Trans. Comput. Biol. Bioinform. 19(3): 1387-1392 (2022) - Anik Chaudhuri, Anwoy Kumar Mohanty, Manoranjan Satpathy:
A Parallelizable Model for Analyzing Cancer Tissue Heterogeneity. IEEE ACM Trans. Comput. Biol. Bioinform. 19(4): 2039-2048 (2022) - Qingyu Chen, Jingcheng Du, Alexis Allot, Zhiyong Lu:
LitMC-BERT: Transformer-Based Multi-Label Classification of Biomedical Literature With An Application on COVID-19 Literature Curation. IEEE ACM Trans. Comput. Biol. Bioinform. 19(5): 2584-2595 (2022) - Xiangan Chen, Shuai Liu, Wen Zhang:
Predicting Coding Potential of RNA Sequences by Solving Local Data Imbalance. IEEE ACM Trans. Comput. Biol. Bioinform. 19(2): 1075-1083 (2022) - Zhong Chen, Wensheng Zhang, Hong-Wen Deng, Kun Zhang:
Effective Cancer Subtype and Stage Prediction via Dropfeature-DNNs. IEEE ACM Trans. Comput. Biol. Bioinform. 19(1): 107-120 (2022) - Shutao Chen, Lin Zhang, Lin Lu, Jia Meng, Hui Liu:
FBCwPlaid: A Functional Biclustering Analysis of Epi-Transcriptome Profiling Data Via a Weighted Plaid Model. IEEE ACM Trans. Comput. Biol. Bioinform. 19(3): 1640-1650 (2022) - Jianhong Cheng, Jin Liu, Hailin Yue, Harrison Bai, Yi Pan, Jianxin Wang:
Prediction of Glioma Grade Using Intratumoral and Peritumoral Radiomic Features From Multiparametric MRI Images. IEEE ACM Trans. Comput. Biol. Bioinform. 19(2): 1084-1095 (2022) - Zhongjian Cheng, Cheng Yan, Fang-Xiang Wu, Jianxin Wang:
Drug-Target Interaction Prediction Using Multi-Head Self-Attention and Graph Attention Network. IEEE ACM Trans. Comput. Biol. Bioinform. 19(4): 2208-2218 (2022) - Jianhong Cheng, Wei Zhao, Jin Liu, Xingzhi Xie, Shangjie Wu, Liangliang Liu, Hailin Yue, Junjian Li, Jianxin Wang, Jun Liu:
Automated Diagnosis of COVID-19 Using Deep Supervised Autoencoder With Multi-View Features From CT Images. IEEE ACM Trans. Comput. Biol. Bioinform. 19(5): 2723-2736 (2022) - Hsin-Hung Chou, Ching-Tien Hsu, Chin-Wei Hsu, Kai-Hsun Yao, Hao-Ching Wang, Sun-Yuan Hsieh:
Novel Algorithm for Improved Protein Classification Using Graph Similarity. IEEE ACM Trans. Comput. Biol. Bioinform. 19(6): 3135-3143 (2022) - Tapan Chowdhury, Susanta Chakraborty, Argha Nandan:
GPU Accelerated Drug Application on Signaling Pathways Containing Multiple Faults Using Boolean Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 19(2): 927-939 (2022) - Jim Clauwaert, Willem Waegeman:
Novel Transformer Networks for Improved Sequence Labeling in genomics. IEEE ACM Trans. Comput. Biol. Bioinform. 19(1): 97-106 (2022) - Pierrick Craveur, Tarun J. Narwani, Narayanaswamy Srinivasan, Jean-Christophe Gelly, Joseph Rebehmed, Alexandre G. de Brevern:
Shaking the β-Bulges. IEEE ACM Trans. Comput. Biol. Bioinform. 19(1): 14-18 (2022) - Francisco Cristovao, Silvia Cascianelli, Arif Canakoglu, Mark J. Carman, Luca Nanni, Pietro Pinoli, Marco Masseroli:
Investigating Deep Learning Based Breast Cancer Subtyping Using Pan-Cancer and Multi-Omic Data. IEEE ACM Trans. Comput. Biol. Bioinform. 19(1): 121-134 (2022) - Zhen Cui, Zhan-Heng Chen, Qinhu Zhang, Valeriya V. Gribova, Vladimir Fedorovich Filaretov, De-Shuang Huang:
RMSCNN: A Random Multi-Scale Convolutional Neural Network for Marine Microbial Bacteriocins Identification. IEEE ACM Trans. Comput. Biol. Bioinform. 19(6): 3663-3672 (2022) - Yajun Dai, Yang Li, Liping Wang, Zhenling Peng, Jianyi Yang:
On Monomeric and Multimeric Structures-Based Protein-Ligand Interactions. IEEE ACM Trans. Comput. Biol. Bioinform. 19(1): 569-574 (2022) - Lopamudra Dey, Anirban Mukhopadhyay:
Compact Genetic Algorithm-Based Feature Selection for Sequence-Based Prediction of Dengue-Human Protein Interactions. IEEE ACM Trans. Comput. Biol. Bioinform. 19(4): 2137-2148 (2022) - Saurav Dhar, Chengchen Zhang, Ion I. Mandoiu, Mukul S. Bansal:
TNet: Transmission Network Inference Using Within-Host Strain Diversity and its Application to Geographical Tracking of COVID-19 Spread. IEEE ACM Trans. Comput. Biol. Bioinform. 19(1): 230-242 (2022) - Dewu Ding, Xiao Sun:
Relating Translation Efficiency to Protein Networks Provides Evolutionary Insights in Shewanella and Its Implications for Extracellular Electron Transfer. IEEE ACM Trans. Comput. Biol. Bioinform. 19(1): 605-613 (2022) - Xiaojian Ding, Fan Yang, Yaoyi Zhong, Jie Cao:
A Novel Recursive Gene Selection Method Based on Least Square Kernel Extreme Learning Machine. IEEE ACM Trans. Comput. Biol. Bioinform. 19(4): 2026-2038 (2022)