2022 export record
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journals/bioinformatics/AbanadesGBD22 share record
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Brennan Abanades , Guy Georges , Alexander Bujotzek , Charlotte M. Deane : ABlooper: fast accurate antibody CDR loop structure prediction with accuracy estimation. Bioinform. 38 (7 ) : 1877-1880 (2022 )export record
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journals/bioinformatics/AbdelmoulaSRRAS22 share record
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Walid M. Abdelmoula , Sylwia Stopka , Elizabeth C. Randall , Michael Regan , Jeffrey N. Agar , Jann N. Sarkaria , William M. Wells III , Tina Kapur , Nathalie Y. R. Agar : massNet: integrated processing and classification of spatially resolved mass spectrometry data using deep learning for rapid tumor delineation. Bioinform. 38 (7 ) : 2015-2021 (2022 )export record
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journals/bioinformatics/AbebePHMWWD22 share record
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Jonathan S. Abebe , Alexander M. Price , Katharina E. Hayer , Ian Mohr , Matthew D. Weitzman , Angus C. Wilson , Daniel P. Depledge : DRUMMER - rapid detection of RNA modifications through comparative nanopore sequencing. Bioinform. 38 (11 ) : 3113-3115 (2022 )export record
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journals/bioinformatics/AcharyyaZB22 share record
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Satwik Acharyya , Xiang Zhou , Veerabhadran Baladandayuthapani : SpaceX: gene co-expression network estimation for spatial transcriptomics. Bioinform. 38 (22 ) : 5033-5041 (2022 )export record
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journals/bioinformatics/AdamczykAS22 share record
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Bartosz Adamczyk , Maciej Antczak , Marta Szachniuk : RNAsolo: a repository of cleaned PDB-derived RNA 3D structures. Bioinform. 38 (14 ) : 3668-3670 (2022 )export record
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journals/bioinformatics/AdamsNKBJ22 share record
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Tim Adams , Marcin Namysl , Alpha Tom Kodamullil , Sven Behnke , Marc Jacobs : Benchmarking table recognition performance on biomedical literature on neurological disorders. Bioinform. 38 (6 ) : 1624-1630 (2022 )export record
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journals/bioinformatics/AgmonSSPPMC22 share record
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Eran Agmon , Ryan K. Spangler , Christopher J. Skalnik , William Poole , Shayn M. Peirce , Jerry H. Morrison , Markus W. Covert : Vivarium: an interface and engine for integrative multiscale modeling in computational biology. Bioinform. 38 (7 ) : 1972-1979 (2022 )export record
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journals/bioinformatics/AinciburuMDLPG22 share record
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Marina Ainciburu , Duncan M. Morgan , Erica A. K. Depasquale , J. Christopher Love , Felipe Prósper , Peter van Galen : WAT3R: recovery of T-cell receptor variable regions from 3′ single-cell RNA-sequencing. Bioinform. 38 (14 ) : 3645-3647 (2022 )export record
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journals/bioinformatics/AkgunPK22 share record
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Mete Akgün , Nico Pfeifer , Oliver Kohlbacher : Efficient privacy-preserving whole-genome variant queries. Bioinform. 38 (8 ) : 2202-2210 (2022 )export record
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journals/bioinformatics/Al-AnziKF22 share record
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Bader F. Al-Anzi , Mohammad Khajah , Saja A. Fakhraldeen : Predicting and explaining the impact of genetic disruptions and interactions on organismal viability. Bioinform. 38 (17 ) : 4088-4099 (2022 )export record
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journals/bioinformatics/AlameerC22 share record
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Abbas Alameer , Davide Chicco : geoCancerPrognosticDatasetsRetriever: a bioinformatics tool to easily identify cancer prognostic datasets on Gene Expression Omnibus (GEO). Bioinform. 38 (6 ) : 1761-1763 (2022 )export record
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journals/bioinformatics/AlcorizaBalaguerGRRL22 share record
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María Isabel Alcoriza-Balaguer , Juan Carlos García-Cañaveras , Francisco Javier Ripoll-Esteve , Marta Roca , Agustín Lahoz : LipidMS 3.0: an R-package and a web-based tool for LC-MS/MS data processing and lipid annotation. Bioinform. 38 (20 ) : 4826-4828 (2022 )export record
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journals/bioinformatics/AlmeidaTD22 share record
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Hayda Almeida , Adrian Tsang , Abdoulaye Baniré Diallo : Improving candidate Biosynthetic Gene Clusters in fungi through reinforcement learning. Bioinform. 38 (16 ) : 3984-3991 (2022 )export record
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journals/bioinformatics/AlmodaresiKMFJP22 share record
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Fatemeh Almodaresi , Jamshed Khan , Sergey Madaminov , Michael Ferdman , Rob Johnson , Prashant Pandey , Rob Patro : An incrementally updatable and scalable system for large-scale sequence search using the Bentley-Saxe transformation. Bioinform. 38 (12 ) : 3155-3163 (2022 )export record
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journals/bioinformatics/AlthagafiAKMAMA22 share record
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Azza Althagafi , Lamia Alsubaie , Nagarajan Kathiresan , Katsuhiko Mineta , Taghrid Aloraini , Fuad Al Mutairi , Majid Alfadhel , Takashi Gojobori , Ahmad Alfares , Robert Hoehndorf : DeepSVP: integration of genotype and phenotype for structural variant prioritization using deep learning. Bioinform. 38 (6 ) : 1677-1684 (2022 )export record
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journals/bioinformatics/AluruSCSA22 share record
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Maneesha Aluru , Harsh Shrivastava , Sriram P. Chockalingam , Shruti Shivakumar , Srinivas Aluru : EnGRaiN: a supervised ensemble learning method for recovery of large-scale gene regulatory networks. Bioinform. 38 (5 ) : 1312-1319 (2022 )export record
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journals/bioinformatics/AmblardBCSZ22 share record
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Elise Amblard , Jonathan Bac , Alexander Chervov , Vassili Soumelis , Andrei Yu. Zinovyev : Hubness reduction improves clustering and trajectory inference in single-cell transcriptomic data. Bioinform. 38 (4 ) : 1045-1051 (2022 )export record
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journals/bioinformatics/AmgadAHMHEMMGEC22 share record
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Mohamed Amgad , Lamees A. Atteya , Hagar Hussein , Kareem Hosny Mohammed , Ehab Hafiz , Maha A. T. Elsebaie , Pooya Mobadersany , David Manthey , David A. Gutman , Habiba Elfandy , Lee A. D. Cooper : Explainable nucleus classification using Decision Tree Approximation of Learned Embeddings. Bioinform. 38 (2 ) : 513-519 (2022 )export record
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journals/bioinformatics/AmiryousefiWJT22 share record
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Ali Amiryousefi , Bernardo Williams , Mohieddin Jafari , Jing Tang : The ENDS of assumptions: an online tool for the epistemic non-parametric drug-response scoring. Bioinform. 38 (11 ) : 3132-3133 (2022 )export record
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journals/bioinformatics/AngaroniCDCGR22 share record
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Fabrizio Angaroni , Kevin Chen , Chiara Damiani , Giulio Caravagna , Alex Graudenzi , Daniele Ramazzotti : PMCE: efficient inference of expressive models of cancer evolution with high prognostic power. Bioinform. 38 (3 ) : 754-762 (2022 )export record
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journals/bioinformatics/AnsaloniGEGS22 share record
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Federico Ansaloni , Nicolò Gualandi , Mauro Esposito , Stefano Gustincich , Remo Sanges : TEspeX: consensus-specific quantification of transposable element expression preventing biases from exonized fragments. Bioinform. 38 (18 ) : 4430-4433 (2022 )export record
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journals/bioinformatics/AnthonCG22 share record
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Christian Anthon , Giulia Ilaria Corsi , Jan Gorodkin : CRISPRon/off: CRISPR/Cas9 on- and off-target gRNA design. Bioinform. 38 (24 ) : 5437-5439 (2022 )export record
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journals/bioinformatics/AptekmannBGGFB22 share record
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Ariel A. Aptekmann , J. Buongiorno , D. Giovannelli , M. Glamoclija , Diego U. Ferreiro , Yana Bromberg : mebipred : identifying metal-binding potential in protein sequence. Bioinform. 38 (14 ) : 3532-3540 (2022 )export record
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journals/bioinformatics/ArefBH22 share record
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Layla Aref , Lisa Bastarache , Jacob J. Hughey : The phers R package: using phenotype risk scores based on electronic health records to study Mendelian disease and rare genetic variants. Bioinform. 38 (21 ) : 4972-4974 (2022 )export record
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journals/bioinformatics/AttaSF22 share record
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Lyla Atta , Arpan Sahoo , Jean Fan : VeloViz: RNA velocity-informed embeddings for visualizing cellular trajectories. Bioinform. 38 (2 ) : 391-396 (2022 )export record
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journals/bioinformatics/AyatiYCK22 share record
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Marzieh Ayati , Serhan Yilmaz , Mark R. Chance , Mehmet Koyutürk : Functional characterization of co-phosphorylation networks. Bioinform. 38 (15 ) : 3785-3793 (2022 )export record
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journals/bioinformatics/Badaczewska-Dawid22 share record
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Aleksandra E. Badaczewska-Dawid , Javier Garcia-Pardo , Aleksander Kuriata , Jordi Pujols , Salvador Ventura , Sebastian Kmiecik : A3D database: structure-based predictions of protein aggregation for the human proteome. Bioinform. 38 (11 ) : 3121-3123 (2022 )export record
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journals/bioinformatics/BaiLSYZC22 share record
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Yang Bai , Yang Li , Yu Shen , Mingyu Yang , Wentao Zhang , Bin Cui : AutoDC: an automatic machine learning framework for disease classification. Bioinform. 38 (13 ) : 3415-3421 (2022 )export record
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journals/bioinformatics/BaiXZGL22 share record
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Tian Bai , Jiayu Xu , Zhenting Zhang , Shuyu Guo , Xiao Luo : Context-aware learning for cancer cell nucleus recognition in pathology images. Bioinform. 38 (10 ) : 2892-2898 (2022 )export record
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journals/bioinformatics/BaiZMYFUI22 share record
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Zeheng Bai , Yao-zhong Zhang , Satoru Miyano , Rui Yamaguchi , Kosuke Fujimoto , Satoshi Uematsu , Seiya Imoto : Identification of bacteriophage genome sequences with representation learning. Bioinform. 38 (18 ) : 4264-4270 (2022 )