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2020 – today
- 2023
[j17]Marek Justyna
, Maciej Antczak, Marta Szachniuk:
Machine learning for RNA 2D structure prediction benchmarked on experimental data. Briefings Bioinform. 24(3) (2023)- [j16]Michal Zurkowski, Maciej Antczak, Marta Szachniuk:
High-quality, customizable heuristics for RNA 3D structure alignment. Bioinform. 39(5) (2023) - 2022
- [j15]Bartosz Adamczyk, Maciej Antczak, Marta Szachniuk:
RNAsolo: a repository of cleaned PDB-derived RNA 3D structures. Bioinform. 38(14): 3668-3670 (2022) - [j14]Jakub Wiedemann, Jacek Kaczor, Maciej Milostan, Tomasz Zok, Jacek Blazewicz, Marta Szachniuk, Maciej Antczak:
RNAloops: a database of RNA multiloops. Bioinform. 38(17): 4200-4205 (2022) - [j13]Kamil Luwanski, Vladyslav Hlushchenko, Mariusz Popenda, Tomasz Zok, Joanna Sarzynska, Daniil Martsich, Marta Szachniuk, Maciej Antczak:
RNAspider: a webserver to analyze entanglements in RNA 3D structures. Nucleic Acids Res. 50(W1): 663-669 (2022) - 2021
- [i3]Jan Badura, Artur Laskowski, Maciej Antczak, Jacek Blazewicz, Grzegorz Pawlak, Erwin Pesch, Thomas Villmann, Szymon Wasik:
Brilliant Challenges Optimization Problem Submission Contest Final Report. CoRR abs/2110.04916 (2021) - 2020
- [j12]Tomasz Zok, Jan Badura, Sylwester Swat, Kacper Figurski, Mariusz Popenda, Maciej Antczak:
New models and algorithms for RNA pseudoknot order assignment. Int. J. Appl. Math. Comput. Sci. 30(2): 315-324 (2020)
2010 – 2019
- 2019
- [j11]Maciej Antczak, Marcin Zablocki, Tomasz Zok, Agnieszka Rybarczyk, Jacek Blazewicz, Marta Szachniuk:
RNAvista: a webserver to assess RNA secondary structures with non-canonical base pairs. Bioinform. 35(1): 152-155 (2019) - 2018
- [j10]Maciej Antczak, Mariusz Popenda, Tomasz Zok, Michal Zurkowski, Ryszard W. Adamiak, Marta Szachniuk:
New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation. Bioinform. 34(8): 1304-1312 (2018) - [j9]Maciej Antczak, Tomasz Zok, Maciej Osowiecki, Mariusz Popenda, Ryszard W. Adamiak, Marta Szachniuk:
RNAfitme: a webserver for modeling nucleobase and nucleoside residue conformation in fixed-backbone RNA structures. BMC Bioinform. 19(1): 304:1-304:11 (2018) - [j8]Szymon Wasik, Maciej Antczak, Jan Badura, Artur Laskowski, Tomasz Sternal:
A Survey on Online Judge Systems and Their Applications. ACM Comput. Surv. 51(1): 3:1-3:34 (2018) - [j7]Tomasz Zok, Maciej Antczak, Michal Zurkowski, Mariusz Popenda, Jacek Blazewicz, Ryszard W. Adamiak, Marta Szachniuk:
RNApdbee 2.0: multifunctional tool for RNA structure annotation. Nucleic Acids Res. 46(Webserver-Issue): W30-W35 (2018) - [i2]Szymon Wasik, Maciej Antczak, Jan Badura, Artur Laskowski:
Evaluation as a Service architecture and crowdsourced problems solving implemented in Optil.io platform. CoRR abs/1807.06002 (2018) - 2017
- [i1]Szymon Wasik, Maciej Antczak, Jan Badura, Artur Laskowski, Tomasz Sternal:
A Survey on Online Judge Systems and Their Applications. CoRR abs/1710.05913 (2017) - 2016
- [j6]Maciej Antczak, Marta Kasprzak, Piotr Lukasiak, Jacek Blazewicz:
Structural alignment of protein descriptors - a combinatorial model. BMC Bioinform. 17: 383 (2016) - [j5]Marek Chlopkowski, Maciej Antczak, Michal Slusarczyk, Aleksander Wdowinski, Michal Zajaczkowski, Marta Kasprzak:
High-order statistical compressor for long-term storage of DNA sequencing data. RAIRO Oper. Res. 50(2): 351-361 (2016) - [c2]Szymon Wasik, Maciej Antczak, Jan Badura, Artur Laskowski, Tomasz Sternal:
Optil.io: Cloud Based Platform For Solving Optimization Problems Using Crowdsourcing Approach. CSCW Companion 2016: 433-436 - 2015
- [j4]Tomasz Zok, Maciej Antczak, Martin Riedel, David Nebel, Thomas Villmann, Piotr Lukasiak, Jacek Blazewicz, Marta Szachniuk:
Building the Library of Rna 3D Nucleotide Conformations Using the Clustering Approach. Int. J. Appl. Math. Comput. Sci. 25(3): 689-700 (2015) - [j3]Agnieszka Rybarczyk, Natalia Szostak, Maciej Antczak, Tomasz Zok, Mariusz Popenda, Ryszard W. Adamiak, Jacek Blazewicz, Marta Szachniuk:
New in silico approach to assessing RNA secondary structures with non-canonical base pairs. BMC Bioinform. 16: 276:1-276:12 (2015) - [j2]Piotr Lukasiak, Maciej Antczak, Tomasz Ratajczak, Marta Szachniuk, Mariusz Popenda, Ryszard W. Adamiak, Jacek Blazewicz:
RNAssess - a web server for quality assessment of RNA 3D structures. Nucleic Acids Res. 43(Webserver-Issue): W502-W506 (2015) - [c1]Piotr Lukasiak, Maciej Antczak, Tomasz Ratajczak, Jacek Blazewicz:
SphereGrinder - reference structure-based tool for quality assessment of protein structural models. BIBM 2015: 665-668 - 2014
- [j1]Maciej Antczak, Tomasz Zok, Mariusz Popenda, Piotr Lukasiak, Ryszard W. Adamiak, Jacek Blazewicz, Marta Szachniuk:
RNApdbee - a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs. Nucleic Acids Res. 42(Webserver-Issue): 368-372 (2014)
Coauthor Index
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