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Oriol Fornes
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2020 – today
- 2023
- [j10]Patrick Gohl, Jaume Bonet
, Oriol Fornes
, Joan Planas-Iglesias
, Narcis Fernandez-Fuentes, Baldo Oliva:
SBILib: a handle for protein modeling and engineering. Bioinform. 39(10) (2023) - [j9]Oriol Fornes
, Tamar Vered Av-Shalom, Andrea J. Korecki, Rachelle A. Farkas, David J. Arenillas, Anthony Mathelier
, Elizabeth M. Simpson
, Wyeth W. Wasserman
:
OnTarget: in silico design of MiniPromoters for targeted delivery of expression. Nucleic Acids Res. 51(W1): 379-386 (2023) - 2022
- [j8]Jaime Abraham Castro-Mondragón
, Rafael Riudavets Puig
, Ieva Rauluseviciute
, Roza Berhanu lemma
, Laura Turchi
, Romain Blanc-Mathieu
, Jeremy Lucas
, Paul Boddie, Aziz Khan
, Nicolás Manosalva Pérez
, Oriol Fornes
, Tiffany Y. Leung
, Alejandro Aguirre
, Fayrouz Hammal
, Daniel Schmelter, Damir Baranasic
, Benoît Ballester
, Albin Sandelin
, Boris Lenhard
, Klaas Vandepoele
, Wyeth W. Wasserman
, François Parcy
, Anthony Mathelier
:
JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles. Nucleic Acids Res. 50(D1): 165-173 (2022) - 2021
- [j7]Joaquim Aguirre-Plans
, Alberto Meseguer, Ruben Molina-Fernandez
, Manuel Alejandro Marín-López
, Gaurav Jumde, Kevin Casanova, Jaume Bonet, Oriol Fornes, Narcis Fernandez-Fuentes
, Baldo Oliva
:
SPServer: split-statistical potentials for the analysis of protein structures and protein-protein interactions. BMC Bioinform. 22(1): 4 (2021) - 2020
- [j6]Oriol Fornes
, Jaime Abraham Castro-Mondragón
, Aziz Khan
, Robin van der Lee
, Xi Zhang
, Phillip Andrew Richmond
, Bhavi P. Modi
, Solenne Correard
, Marius Gheorghe
, Damir Baranasic
, Walter Santana-Garcia
, Ge Tan
, Jeanne Chèneby, Benoît Ballester
, François Parcy, Albin Sandelin
, Boris Lenhard
, Wyeth W. Wasserman
, Anthony Mathelier
:
JASPAR 2020: update of the open-access database of transcription factor binding profiles. Nucleic Acids Res. 48(Database-Issue): D87-D92 (2020)
2010 – 2019
- 2019
- [j5]Wenqiang Shi, Oriol Fornes
, Wyeth W. Wasserman
:
Gene expression models based on transcription factor binding events confer insight into functional cis-regulatory variants. Bioinform. 35(15): 2610-2617 (2019) - 2018
- [j4]Aziz Khan
, Oriol Fornes, Arnaud Stigliani, Marius Gheorghe, Jaime Abraham Castro-Mondragón, Robin van der Lee, Adrien Bessy, Jeanne Chèneby, Shubhada R. Kulkarni, Ge Tan, Damir Baranasic, David J. Arenillas, Albin Sandelin
, Klaas Vandepoele
, Boris Lenhard, Benoît Ballester
, Wyeth W. Wasserman
, François Parcy
, Anthony Mathelier
:
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. 46(Database-Issue): D1284 (2018) - [j3]Aziz Khan
, Oriol Fornes
, Arnaud Stigliani
, Marius Gheorghe, Jaime Abraham Castro-Mondragón
, Robin van der Lee
, Adrien Bessy, Jeanne Chèneby, Shubhada R. Kulkarni
, Ge Tan
, Damir Baranasic
, David J. Arenillas, Albin Sandelin
, Klaas Vandepoele
, Boris Lenhard
, Benoît Ballester
, Wyeth W. Wasserman
, François Parcy
, Anthony Mathelier
:
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. 46(Database-Issue): D260-D266 (2018) - 2016
- [j2]Anthony Mathelier
, Oriol Fornes
, David J. Arenillas, Chih-Yu Chen
, Grégoire Denay
, Jessica J. Y. Lee
, Wenqiang Shi, Casper Shyr, Ge Tan, Rebecca Worsley-Hunt, Allen W. Zhang, François Parcy
, Boris Lenhard
, Albin Sandelin
, Wyeth W. Wasserman
:
JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res. 44(Database-Issue): 110-115 (2016)
2000 – 2009
- 2009
- [j1]Oriol Fornes
, Ramon Aragues, Jordi Espadaler
, Marc A. Martí-Renom
, Andrej Sali, Baldo Oliva:
ModLink+: improving fold recognition by using protein-protein interactions. Bioinform. 25(12): 1506-1512 (2009)
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