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2020 – today
- 2023
[j30]Patrick Gohl
, Jaume Bonet, Oriol Fornes, Joan Planas-Iglesias, Narcis Fernandez-Fuentes, Baldo Oliva:
SBILib: a handle for protein modeling and engineering. Bioinform. 39(10) (2023)- 2022
- [j29]Cristiano Galletti, Joaquim Aguirre-Plans, Baldo Oliva, Narcis Fernandez-Fuentes:
Prediction of Adverse Drug Reaction Linked to Protein Targets Using Network-Based Information and Machine Learning. Frontiers Bioinform. 2 (2022) - 2021
- [j28]Cristiano Galletti, Patricia Mirela Bota, Baldo Oliva, Narcis Fernandez-Fuentes:
Mining drug-target and drug-adverse drug reaction databases to identify target-adverse drug reaction relationships. Database J. Biol. Databases Curation 2021 (2021) - [j27]Joaquim Aguirre-Plans, Alberto Meseguer, Ruben Molina-Fernandez, Manuel Alejandro Marín-López, Gaurav Jumde, Kevin Casanova, Jaume Bonet, Oriol Fornes, Narcis Fernandez-Fuentes, Baldo Oliva:
SPServer: split-statistical potentials for the analysis of protein structures and protein-protein interactions. BMC Bioinform. 22(1): 4 (2021)
2010 – 2019
- 2018
- [j26]Manuel Alejandro Marín-López, Joan Planas-Iglesias, Joaquim Aguirre-Plans, Jaume Bonet, Javier García-García, Narcis Fernandez-Fuentes, Baldo Oliva:
On the mechanisms of protein interactions: predicting their affinity from unbound tertiary structures. Bioinform. 34(4): 592-598 (2018) - 2015
- [j25]Baldo Oliva, Narcis Fernandez-Fuentes:
Knowledge-based modeling of peptides at protein interfaces: PiPreD. Bioinform. 31(9): 1405-1410 (2015) - 2014
- [j24]Jaume Bonet, András Fiser, Baldo Oliva, Narcis Fernandez-Fuentes:
Smotifs as structural local descriptors of supersecondary elements: classification, completeness and applications. Bio Algorithms Med Syst. 10(4): 195-212 (2014) - [j23]Emre Guney, Javier García-García, Baldo Oliva:
GUILDify: a web server for phenotypic characterization of genes through biological data integration and network-based prioritization algorithms. Bioinform. 30(12): 1789-1790 (2014) - [j22]Jaume Bonet, Joan Segura, Joan Planas-Iglesias, Baldomero Oliva, Narcis Fernandez-Fuentes:
Frag'r'Us: knowledge-based sampling of protein backbone conformations for de novo structure-based protein design. Bioinform. 30(13): 1935-1936 (2014) - [j21]Jaume Bonet, Joan Planas-Iglesias, Javier García-García, Manuel Alejandro Marín-López, Narcis Fernandez-Fuentes, Baldo Oliva:
ArchDB 2014: structural classification of loops in proteins. Nucleic Acids Res. 42(Database-Issue): 315-319 (2014) - 2013
- [j20]Joan Planas-Iglesias, Manuel Alejandro Marín-López, Jaume Bonet, Javier García-García, Baldo Oliva:
iLoops: a protein-protein interaction prediction server based on structural features. Bioinform. 29(18): 2360-2362 (2013) - 2012
- [j19]Joan Segura, Baldomero Oliva, Narcis Fernandez-Fuentes:
CAPS-DB: a structural classification of helix-capping motifs. Nucleic Acids Res. 40(Database-Issue): 479-485 (2012) - [j18]Javier García-García, Sylvia Schleker, Judith Klein-Seetharaman, Baldo Oliva:
BIPS: BIANA Interolog Prediction Server. A tool for protein-protein interaction inference. Nucleic Acids Res. 40(Web-Server-Issue): 147-151 (2012) - 2011
- [j17]Emre Guney, Baldo Oliva:
Toward PWAS: discovering pathways associated with human disorders. BMC Bioinform. 12(S-11): A12 (2011) - 2010
- [j16]Javier García-García, Emre Guney, Ramon Aragues, Joan Planas-Iglesias, Baldo Oliva:
Biana: a software framework for compiling biological interactions and analyzing networks. BMC Bioinform. 11: 56 (2010)
2000 – 2009
- 2009
- [j15]Oriol Fornes, Ramon Aragues, Jordi Espadaler, Marc A. Martí-Renom, Andrej Sali, Baldo Oliva:
ModLink+: improving fold recognition by using protein-protein interactions. Bioinform. 25(12): 1506-1512 (2009) - 2008
- [j14]Ramon Aragues, Chris Sander, Baldo Oliva:
Predicting cancer involvement of genes from heterogeneous data. BMC Bioinform. 9 (2008) - [j13]Jordi Espadaler, Narayanan Eswar, Enrique Querol, Francesc X. Avilés, Andrej Sali, Marc A. Martí-Renom, Baldomero Oliva:
Prediction of enzyme function by combining sequence similarity and protein interactions. BMC Bioinform. 9 (2008) - [j12]Erik M. van Mulligen, Montserrat Cases, Kristina M. Hettne, Eva Molero, Marc Weeber, Kevin A. Robertson, Baldomero Oliva, Guillermo de la Calle, Victor Maojo:
Model Formulation: Training Multidisciplinary Biomedical Informatics Students: Three Years of Experience. J. Am. Medical Informatics Assoc. 15(2): 246-254 (2008) - [c3]Christoph M. Friedrich, Martin Hofmann-Apitius, Robert Dunlop, Ioannis Chronakis, Miriam C. J. M. Sturkenboom, Roelof Risselada, Baldo Oliva, Ferran Sanz:
Initial Results on Knowledge Discovery and Decision Support for Intracranial Aneurysms. HEALTHINF (1) 2008: 265-272 - 2007
- [j11]Simon J. Cockell, Baldo Oliva, Richard M. Jackson:
Structure-based evaluation of in silico predictions of protein-protein interactions using Comparative Docking. Bioinform. 23(5): 573-581 (2007) - [j10]Ramon Aragues, Andrej Sali, Jaume Bonet, Marc A. Martí-Renom, Baldo Oliva:
Characterization of Protein Hubs by Inferring Interacting Motifs from Protein Interactions. PLoS Comput. Biol. 3(9) (2007) - 2006
- [j9]Ramon Aragues, Daniel Jaeggi, Baldo Oliva:
PIANA: protein interactions and network analysis. Bioinform. 22(8): 1015-1017 (2006) - [j8]Jordi Espadaler, Enrique Querol, Francesc X. Avilés, Baldo Oliva:
Identification of function-associated loop motifs and application to protein function prediction. Bioinform. 22(18): 2237-2243 (2006) - 2005
- [j7]Jordi Espadaler, Oriol Romero-Isart, Richard M. Jackson, Baldo Oliva:
Prediction of protein-protein interactions using distant conservation of sequence patterns and structure relationships. Bioinform. 21(16): 3360-3368 (2005) - [c2]Armando Vieira, Baldomero Oliva:
Protein Loop Classification Using Artificial Neural Networks. BSB 2005: 222-225 - 2004
- [j6]Jordi Espadaler, Narcis Fernandez-Fuentes, Antonio Hermoso, Enrique Querol, Francesc X. Avilés, Michael J. E. Sternberg, Baldomero Oliva:
ArchDB: automated protein loop classification as a tool for structural genomics. Nucleic Acids Res. 32(Database-Issue): 185-188 (2004) - [c1]Joan Planas-Iglesias, Daniel Aguilar, Baldomero Oliva:
On the Analysis of the Intersection of the Interactome and the Metabolome. Spanish Bioinformatics Conference 2004: 68-69 - 2003
- [j5]Daniel Aguilar, Baldomero Oliva, Francesc X. Avilés, Enrique Querol:
SNOW: Standard NOmenclature Wizard to help searching for (bio) chemical standardized names. Bioinform. 19(18): 2492-2493 (2003) - 2002
- [j4]Daniel Aguilar, Baldomero Oliva, Francesc X. Avilés, Enrique Querol:
TranScout: prediction of gene expression regulatory proteins from their sequences. Bioinform. 18(4): 597-607 (2002) - 2001
- [j3]José M. Mas, Patrick Aloy, Marc A. Martí-Renom, Baldomero Oliva, R. de Llorens, Francesc X. Avilés, Enrique Querol:
Classification of protein disulphide-bridge topologies. J. Comput. Aided Mol. Des. 15(5): 477-487 (2001) - 2000
- [j2]Patrick Aloy, José M. Mas, Marc A. Martí-Renom, Enrique Querol, Francesc X. Avilés, Baldomero Oliva:
Refinement of modelled structures by knowledge-based energy profiles and secondary structure prediction: Application to the human procarboxypeptidase A2. J. Comput. Aided Mol. Des. 14(1): 83-92 (2000)
1990 – 1999
- 1997
- [j1]Patrick Aloy, Juan Cedano, Baldomero Oliva, Francesc X. Avilés, Enrique Querol:
'TransMem': a neural network implemented in Excel spreadsheets for predicting transmembrane domains of proteins. Comput. Appl. Biosci. 13(3): 231-234 (1997)
Coauthor Index
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