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2010 – 2019
- 2017
[j27]Ruolin Liu
, Julie A. Dickerson:
Strawberry: Fast and accurate genome-guided transcript reconstruction and quantification from RNA-Seq. PLoS Comput. Biol. 13(11) (2017)- [c18]Gaurav Kandoi, Julie A. Dickerson:
Differential alternative splicing patterns with differential expression to computationally extract plant molecular pathways. BIBM 2017: 2163-2170 - 2016
- [j26]Jesse R. Walsh, Mary L. Schaeffer, Peifen Zhang, Seung Yon Rhee, Julie A. Dickerson, Taner Z. Sen:
The quality of metabolic pathway resources depends on initial enzymatic function assignments: a case for maize. BMC Syst. Biol. 10: 129:1-129:9 (2016) - 2014
- [j25]Ruolin Liu, Ann E. Loraine, Julie A. Dickerson:
Comparisons of computational methods for differential alternative splicing detection using RNA-seq in plant systems. BMC Bioinform. 15: 364 (2014) - [j24]Jesse R. Walsh, Taner Z. Sen, Julie A. Dickerson:
A computational platform to maintain and migrate manual functional annotations for BioCyc databases. BMC Syst. Biol. 8: 115 (2014) - [j23]Wengang Zhou, Julie A. Dickerson:
A novel class dependent feature selection method for cancer biomarker discovery. Comput. Biol. Medicine 47: 66-75 (2014) - [j22]William Eric Marsh, Jonathan W. Kelly, Julie A. Dickerson, James H. Oliver:
Fuzzy Navigation Engine: Mitigating the Cognitive Demands of Semi-Natural Locomotion. Presence Teleoperators Virtual Environ. 23(3): 300-319 (2014) - 2013
- [c17]Ruolin Liu, Julie A. Dickerson:
Computational methods for alternative splicing detection using RNA-seq. BCB 2013: 663 - [c16]Jesse R. Walsh, Julie A. Dickerson:
Semi-automated Constraint-based Metabolic Model Generation. BCB 2013: 668 - [c15]Divya Mistry, Julie A. Dickerson:
Incorporating Gene Annotations as Node Metadata to Improve Network Centrality Measures for Better Node Ranking. BCB 2013: 669 - 2012
- [j21]John L. Van Hemert, Julie A. Dickerson:
Discriminating response groups in metabolic and regulatory pathway networks. Bioinform. 28(7): 947-954 (2012) - [j20]Tian Xia, Jiansong Tong, Shailendra S. Rathore, Xun Gu, Julie A. Dickerson:
Network motif comparison rationalizes Sec1/Munc18-SNARE regulation mechanism in exocytosis. BMC Syst. Biol. 6: 19 (2012) - [j19]Wengang Zhou, Julie A. Dickerson:
StruLocPred: structure-based protein subcellular localisation prediction using multi-class support vector machine. Int. J. Data Min. Bioinform. 6(2): 130-143 (2012) - [j18]Sudhansu Dash, John L. Van Hemert, Lu Hong, Roger P. Wise, Julie A. Dickerson:
PLEXdb: gene expression resources for plants and plant pathogens. Nucleic Acids Res. 40(Database-Issue): 1194-1201 (2012) - [j17]Preeti Bais, Stephanie M. Moon-Quanbeck, Basil J. Nikolau, Julie A. Dickerson:
Plantmetabolomics.org: mass spectrometry-based Arabidopsis metabolomics - database and tools update. Nucleic Acids Res. 40(Database-Issue): 1216-1220 (2012) - 2011
- [j16]Tian Xia, John L. Van Hemert, Julie A. Dickerson:
CytoModeler: a tool for bridging large-scale network analysis and dynamic quantitative modeling. Bioinform. 27(11): 1578-1580 (2011) - [j15]Yao Fu, Laura R. Jarboe, Julie A. Dickerson:
Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities. BMC Bioinform. 12: 233 (2011) - [j14]John L. Van Hemert, Julie A. Dickerson:
Monte Carlo randomization tests for large-scale abundance datasets on the GPU. Comput. Methods Programs Biomed. 101(1): 80-86 (2011) - 2010
- [j13]John L. Van Hemert, Julie A. Dickerson:
PathwayAccess: CellDesigner plugins for pathway databases. Bioinform. 26(18): 2345-2346 (2010) - [j12]Tian Xia, John L. Van Hemert, Julie A. Dickerson:
OmicsAnalyzer: a Cytoscape plug-in suite for modeling omics data. Bioinform. 26(23): 2995-2996 (2010) - [j11]Ming Jia, Suh-Yeon Choi, Dirk Reiners, Eve Syrkin Wurtele, Julie A. Dickerson:
MetNetGE: interactive views of biological networks and ontologies. BMC Bioinform. 11: 469 (2010) - [c14]Yao Fu, Laura R. Jarboe, Julie A. Dickerson:
Gene Regulatory Network Reconstruction Based on Gene Expression and Transcription Factor Activities. BIOCOMP 2010: 113-119 - [c13]Ming Jia, Ling Li, Erin Boggess, Eve Syrkin Wurtele, Julie A. Dickerson:
Visualizing Multivariate Hierarchic Data Using Enhanced Radial Space-Filling Layout. ISVC (1) 2010: 350-360 - [c12]Shubhalaxmi Kher, Julie A. Dickerson, Neelam Rawat:
Biological pathway data integration trends, techniques, issues and challenges: A survey. NaBIC 2010: 177-182
2000 – 2009
- 2009
- [j10]Linyong Mao, John L. Van Hemert, Sudhansu Dash, Julie A. Dickerson:
Arabidopsis gene co-expression network and its functional modules. BMC Bioinform. 10: 346 (2009) - [c11]Muhieddine El Kaissi, Ming Jia, Dirk Reiners, Julie A. Dickerson, Eve Syrkin Wurtele:
Reaction Centric Layout for Metabolic Networks. ISVC (2) 2009: 81-91 - [c10]Muhieddine El Kaissi, Ming Jia, Dirk Reiners, Julie A. Dickerson, Eve Syrkin Wurtele:
Visualization of Gene Regulatory Networks. ISVC (2) 2009: 909-918 - 2008
- [j9]Tian Xia, Julie A. Dickerson:
OmicsViz: Cytoscape plug-in for visualizing omics data across species. Bioinform. 24(21): 2557-2558 (2008) - 2007
- [c9]Wen Zhou, Tian Xia, Jiansong Tong, Julie A. Dickerson, Bo Su, Xun Gu:
Modeling protein interaction network and mechanisms in exocytosis. BIBE 2007: 665-672 - [c8]Ming Jia, Shaozhi Ye, Xing Li, Julie A. Dickerson:
Web Site Recommendation Using HTTP Traffic. ICDM 2007: 535-540 - 2006
- [c7]Jianqiang Xin, Linfeng Zhang, Brad Aswegan, John Dickerson, Julie A. Dickerson, Thomas E. Daniels, Yong Guan:
A testbed for evaluation and analysis of stepping stone attack attribution techniques. TRIDENTCOM 2006 - [c6]Yuting Yang, Eve Syrkin Wurtele, Carolina Cruz-Neira, Julie A. Dickerson:
Hierarchical visualization of metabolic networks using virtual reality. VRCIA 2006: 377-381 - 2005
- [j8]Xiaoyun Tang, Lishuang Shen, Julie A. Dickerson:
BarleyExpress: a web-based submission tool for enriched microarray database annotations. Bioinform. 21(3): 399-401 (2005) - [j7]Jing Ding, Karthikeyan Viswanathan, Daniel Berleant, Laron M. Hughes, Eve Syrkin Wurtele, Daniel A. Ashlock, Julie A. Dickerson, Andy W. Fulmer, Patrick S. Schnable:
Using the biological taxonomy to access biological literature with PathBinderH. Bioinform. 21(10): 2560-2562 (2005) - [j6]Yuting Yang, Levent Engin, Eve Syrkin Wurtele, Carolina Cruz-Neira, Julie A. Dickerson:
Integration of metabolic networks and gene expression in virtual reality. Bioinform. 21(18): 3645-3650 (2005) - [j5]Lishuang Shen, Jian Gong, Rico A. Caldo, Dan Nettleton, Dianne Cook, Roger P. Wise, Julie A. Dickerson:
BarleyBase - an expression profiling database for plant genomics. Nucleic Acids Res. 33(Database-Issue): 614-618 (2005) - [j4]Pan Du, Jian Gong, Eve Syrkin Wurtele, Julie A. Dickerson:
Modeling gene expression networks using fuzzy logic. IEEE Trans. Syst. Man Cybern. Part B 35(6): 1351-1359 (2005) - 2004
- [c5]Galen Faidley, Jayme Hero, Kukjin Lee, Bernard Lwakabamba, Robert D. Walstrom, Feng Chen, Julie A. Dickerson, Diane T. Rover, Robert J. Weber, Carolina Cruz-Neira:
Developing an Integrated Wireless System for Fully Immersive Virtual Reality Environments. ISWC 2004: 178-179 - 2003
- [c4]Jianqiang Xin, John E. Dickerson, Julie A. Dickerson:
Fuzzy feature extraction and visualization for intrusion detection. FUZZ-IEEE 2003: 1249-1254 - [p1]Julie A. Dickerson, Daniel Berleant, Z. Cox, W. Qi, Eve Syrkin Wurtele:
Creating Metabolic Network Models using Text Mining and Expert Knowledge. Computational Biology and Genome Informatics 2003: 207-238
1990 – 1999
- 1999
- [c3]Julie A. Dickerson, J. Hong, Z. Cox, D. Bailey:
A comparison of radial basis function networks and fuzzy neural logic networks for autonomous star recognition. IJCNN 1999: 3204-3207 - 1996
- [j3]Hyun Mun Kim, Julie A. Dickerson, Bart Kosko:
Fuzzy throttle and brake control for platoons of smart cars. Fuzzy Sets Syst. 84(3): 209-234 (1996) - [j2]Julie A. Dickerson, Bart Kosko:
Fuzzy function approximation with ellipsoidal rules. IEEE Trans. Syst. Man Cybern. Part B 26(4): 542-560 (1996) - 1994
- [j1]Julie A. Dickerson, Bart Kosko:
Virtual Worlds as Fuzzy Cognitive Maps. Presence Teleoperators Virtual Environ. 3(2): 173-189 (1994) - 1993
- [c2]Julie A. Dickerson, Bart Kosko:
Fuzzy function learning with covariance ellipsoids. ICNN 1993: 1162-1167 - [c1]Julie A. Dickerson, Bart Kosko:
Virtual Worlds as Fuzzy Cognitive Maps. VRAIS 1993: 471-477
Coauthor Index
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