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ORCIDFrank Oliver Glöckner
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- affiliation: Max-Planck-Institut für Marine Mikrobiologie, Bremen, Germany
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Journal Articles
- 2021
[j23]Gerhard Mayer
, Wolfgang Müller, Karin Schork, Julian Uszkoreit, Andreas Weidemann, Ulrike Wittig, Maja Rey, Christian Quast, Janine Felden, Frank Oliver Glöckner, Matthias Lange, Daniel Arend, Sebastian Beier, Astrid Junker, Uwe Scholz, Danuta Schüler, Hans A. Kestler, Daniel Wibberg, Alfred Pühler, Sven Twardziok, Jürgen Eils, Roland Eils, Steve Hoffmann, Martin Eisenacher, Michael Turewicz:
Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases. Briefings Bioinform. 22(5) (2021)- 2020
- [j22]Hendrikje Seifert, Marc Weber, Frank Oliver Glöckner, Ivaylo Kostadinov:
An open-source GIS-enabled lookup service for Nagoya Protocol party information. Database J. Biol. Databases Curation 2020 (2020) - [j21]Rachel Drysdale, Charles E. Cook, Robert Petryszak, Vivienne Baillie Gerritsen, Mary Barlow, Elisabeth Gasteiger, Franziska Gruhl, Jürgen Haas, Jerry Lanfear, Rodrigo Lopez, Nicole Redaschi, Heinz Stockinger, Daniel Teixeira, Aravind Venkatesan, Alex Bateman, Alan J. Bridge, Guy Cochrane, Robert D. Finn, Frank Oliver Glöckner, Marc Hanauer, Thomas M. Keane, Andrew Leach, Luana Licata, Per Oksvold, Sandra E. Orchard, Christine A. Orengo, Helen E. Parkinson, Bengt Persson, Pablo Porras, Jordi Rambla, Ana Rath, Charlotte Rodwell, Ugis Sarkans, Dietmar Schomburg, Ian Sillitoe, J. Dylan Spalding, Mathias Uhlén, Sameer Velankar, Juan Antonio Vizcaíno, Kalle von Feilitzen, Christian von Mering, Andrew D. Yates, Niklas Blomberg, Christine Durinx, Johanna R. McEntyre:
The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences. Bioinform. 36(8): 2636-2642 (2020) - 2019
- [j20]Gerhard Mayer, Christian Quast, Janine Felden, Matthias Lange, Manuel Prinz, Alfred Pühler, Chris Lawerenz, Uwe Scholz, Frank Oliver Glöckner, Wolfgang Müller, Katrin Marcus, Martin Eisenacher:
A generally applicable lightweight method for calculating a value structure for tools and services in bioinformatics infrastructure projects. Briefings Bioinform. 20(4): 1215-1221 (2019) - [j19]Gerhard Rambold, Pelin Yilmaz, Janno Harjes, Sabrina Klaster, Veronica Sanz, Anton Link, Frank Oliver Glöckner, Dagmar Triebel:
Meta-omics data and collection objects (MOD-CO): a conceptual schema and data model for processing sample data in meta-omics research. Database J. Biol. Databases Curation 2019: baz002 (2019) - [j18]Emiliano Pereira-Flores, Frank Oliver Glöckner, Antonio Fernandez-Guerra:
Fast and accurate average genome size and 16S rRNA gene average copy number computation in metagenomic data. BMC Bioinform. 20(1): 453:1-453:13 (2019) - [j17]R. Henrik Nilsson, Karl-Henrik Larsson, Andy F. S. Taylor, Johan Bengtsson-Palme, Thomas S. Jeppesen, Dmitry Schigel, Peter Kennedy, Kathryn Picard, Frank Oliver Glöckner, Leho Tedersoo, Irja Saar, Urmas Kõljalg, Kessy Abarenkov:
The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications. Nucleic Acids Res. 47(Database-Issue): D259-D264 (2019) - 2017
- [j16]Alan Beccati, Jan Gerken, Christian Quast, Pelin Yilmaz, Frank Oliver Glöckner:
SILVA tree viewer: interactive web browsing of the SILVA phylogenetic guide trees. BMC Bioinform. 18(1): 433:1-433:4 (2017) - 2016
- [j15]Michael Richter, Ramon Rosselló-Mora, Frank Oliver Glöckner, Jörg Peplies:
JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison. Bioinform. 32(6): 929-931 (2016) - 2014
- [j14]Pelin Yilmaz, Laura Wegener Parfrey, Pablo Yarza, Jan Gerken, Elmar Pruesse, Christian Quast, Timmy Schweer, Jörg Peplies, Wolfgang Ludwig, Frank Oliver Glöckner:
The SILVA and "All-species Living Tree Project (LTP)" taxonomic frameworks. Nucleic Acids Res. 42(Database-Issue): 643-648 (2014) - 2013
- [j13]Christian Quast, Elmar Pruesse, Pelin Yilmaz, Jan Gerken, Timmy Schweer, Pablo Yarza, Jörg Peplies, Frank Oliver Glöckner:
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res. 41(Database-Issue): 590-596 (2013) - 2012
- [j12]Hanno Teeling, Frank Oliver Glöckner:
Current opportunities and challenges in microbial metagenome analysis - a bioinformatic perspective. Briefings Bioinform. 13(6): 728-742 (2012) - [j11]Elmar Pruesse, Jörg Peplies, Frank Oliver Glöckner:
SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes. Bioinform. 28(14): 1823-1829 (2012) - [j10]Marcin Radom, Agnieszka Rybarczyk, Renzo Kottmann, Piotr Formanowicz, Marta Szachniuk, Frank Oliver Glöckner, Dietrich Rebholz-Schuhmann, Jacek Blazewicz:
Poseidon: An information retrieval and extraction system for metagenomic marine science. Ecol. Informatics 12: 10-15 (2012) - 2010
- [j9]Wolfgang Hankeln, Pier Luigi Buttigieg, Dennis Fink, Renzo Kottmann, Pelin Yilmaz, Frank Oliver Glöckner:
MetaBar - a tool for consistent contextual data acquisition and standards compliant submission. BMC Bioinform. 11: 358 (2010) - [j8]Renzo Kottmann, Ivaylo Kostadinov, Melissa Beth Duhaime, Pier Luigi Buttigieg, Pelin Yilmaz, Wolfgang Hankeln, Jost Waldmann, Frank Oliver Glöckner:
Megx.net: integrated database resource for marine ecological genomics. Nucleic Acids Res. 38(Database-Issue): 391-395 (2010) - 2008
- [j7]Uta Bohnebeck, Thierry Lombardot, Renzo Kottmann, Frank Oliver Glöckner:
MetaMine - A tool to detect and analyse gene patterns in their environmental context. BMC Bioinform. 9 (2008) - [j6]Michael Richter, Thierry Lombardot, Ivaylo Kostadinov, Renzo Kottmann, Melissa Beth Duhaime, Jörg Peplies, Frank Oliver Glöckner:
JCoast - A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes. BMC Bioinform. 9 (2008) - 2007
- [j5]Thierry Lombardot, Renzo Kottmann, Gregory Giuliani, Andrea de Bono, Nans Addor, Frank Oliver Glöckner:
MetaLook: a 3D visualisation software for marine ecological genomics. BMC Bioinform. 8 (2007) - 2006
- [j4]Hanno Teeling, Frank Oliver Glöckner:
RibAlign: a software tool and database for eubacterial phylogeny based on concatenated ribosomal protein subunits. BMC Bioinform. 7: 66 (2006) - [j3]Thierry Lombardot, Renzo Kottmann, Hauke Pfeffer, Michael Richter, Hanno Teeling, Christian Quast, Frank Oliver Glöckner:
Megx.net - database resources for marine ecological genomics. Nucleic Acids Res. 34(Database-Issue): 390-393 (2006) - 2005
- [j2]Yadhu Kumar, Ralf Westram, Sebastian Behrens, Bernhard Fuchs, Frank Oliver Glöckner, Rudolf Amann, Harald Meier, Wolfgang Ludwig:
Graphical representation of ribosomal RNA probe accessibility data using ARB software package. BMC Bioinform. 6: 61 (2005) - 2004
- [j1]Hanno Teeling, Jost Waldmann, Thierry Lombardot, Margarete Bauer, Frank Oliver Glöckner:
TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences. BMC Bioinform. 5: 163 (2004)
Conference and Workshop Papers
- 2023
- [c5]Michael Diepenbroek, Ivaylo Kostadinov, Bernhard Seeger, Frank Oliver Glöckner, Marius A. Dieckmann, Alexander Goesmann, Barbara Ebert, Sonja Schimmler, York Sure-Vetter:
Towards a Research Data Commons in the German National Research Data Infrastructure NFDI: Vision, Governance, Architecture. CoRDI 2023 - [c4]Barbara Ebert, Judith Sophie Engel, Ivaylo Kostadinov, Anton Güntsch, Frank Oliver Glöckner:
Connecting National and International Data Infrastructures in Biodiversity Research The Case of NFDI4Biodiversity, a German Consortium for Biodiversity, Ecology and Environmental Data. CoRDI 2023 - 2014
- [c3]Michael Diepenbroek, Frank Oliver Glöckner, Peter Grobe, Anton Güntsch, Robert Huber, Birgitta König-Ries, Ivaylo Kostadinov, Jens Nieschulze, Bernhard Seeger, Robert Tolksdorf, Dagmar Triebel:
Towards an Integrated Biodiversity and Ecological Research Data Management and Archiving Platform: The German Federation for the Curation of Biological Data (GFBio). GI-Jahrestagung 2014: 1711-1721 - 2013
- [c2]Heiner Klingenberg, Robin Martinjak, Frank Oliver Glöckner, Rolf Daniel, Thomas Lingner, Peter Meinicke:
Dinucleotide distance histograms for fast detection of rRNA in metatranscriptomic sequences. GCB 2013: 80-89 - 2010
- [c1]Wolfgang Hankeln, Pier Luigi Buttigieg, Ivaylo Kostadinov, Renzo Kottmann, Pelin Yilmaz, Melissa Beth Duhaime, Frank Oliver Glöckner:
Applying graph theoretic approaches to microbial metagenomes: ecological perspectives on function. BCB 2010: 478-480
Informal and Other Publications
- 2021
- [i2]Robert M. Waterhouse, Anne-Françoise Adam-Blondon, Donat Agosti, Petr Baldrian, Bachir Balech, Erwan Le Corre, Robert P. Davey, Henrik Lantz, Graziano Pesole, Christian Quast, Frank Oliver Glöckner, Niels Raes, Anna Sandionigi, Monica Santamaria, Wouter Addink, Jiri Vohradsky, Amandine Nunes-Jorge, Nils Peder Willassen, Jerry Lanfear:
Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR. F1000Research 10: 1238 (2021) - 2019
- [i1]Daniel Wibberg, Bérénice Batut, Peter Belmann, Jochen Blom, Frank Oliver Glöckner, Björn A. Grüning, Nils Hoffmann, Nils Kleinbölting, René Rahn, Maja Rey, Uwe Scholz, Malvika Sharan, Andreas Tauch, Ulrike Trojahn, Björn Usadel, Oliver Kohlbacher:
The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR. F1000Research 8: 1877 (2019)
Coauthor Index
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