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Steve Hoffmann
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2020 – today
- 2024
- [j20]Aimer Gutierrez-Diaz, Steve Hoffmann, Juan Carlos Gallego-Gómez, Clara Bermudez-Santana:
Systematic computational hunting for small RNAs derived from ncRNAs during dengue virus infection in endothelial HMEC-1 cells. Frontiers Bioinform. 4 (2024) - 2023
- [j19]Felix M. Weidner, Julian D. Schwab, Sabine Wölk, Felix Rupprecht, Nensi Ikonomi, Silke D. Werle, Steve Hoffmann, Michael Kühl, Hans A. Kestler:
Leveraging quantum computing for dynamic analyses of logical networks in systems biology. Patterns 4(3): 100705 (2023) - 2022
- [j18]Robert Schwarz, Philipp Koch, Jeanne Wilbrandt, Steve Hoffmann:
Locus-specific expression analysis of transposable elements. Briefings Bioinform. 23(1) (2022) - 2021
- [j17]Gerhard Mayer, Wolfgang Müller, Karin Schork, Julian Uszkoreit, Andreas Weidemann, Ulrike Wittig, Maja Rey, Christian Quast, Janine Felden, Frank Oliver Glöckner, Matthias Lange, Daniel Arend, Sebastian Beier, Astrid Junker, Uwe Scholz, Danuta Schüler, Hans A. Kestler, Daniel Wibberg, Alfred Pühler, Sven Twardziok, Jürgen Eils, Roland Eils, Steve Hoffmann, Martin Eisenacher, Michael Turewicz:
Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases. Briefings Bioinform. 22(5) (2021) - 2020
- [c9]Manuela M. do Almo, Isabel G. Sousa, Waldeyr Mendes Cordeiro da Silva, Thomas Gatter, Peter F. Stadler, Steve Hoffmann, Andrea Queiroz Maranhão, Marcelo M. Brigido:
Anti-CD3 Stimulated T Cell Transcriptome Reveals Novel ncRNAs and Correlates with a Suppressive Profile. BSB 2020: 180-191
2010 – 2019
- 2018
- [j16]Gero Doose, Stephan H. Bernhart, Rabea Wagener, Steve Hoffmann:
DIEGO: detection of differential alternative splicing using Aitchison's geometry. Bioinform. 34(6): 1066-1068 (2018) - 2017
- [j15]Felipe A. Louza, Guilherme P. Telles, Steve Hoffmann, Cristina Dutra de Aguiar Ciferri:
Generalized enhanced suffix array construction in external memory. Algorithms Mol. Biol. 12(1): 26:1-26:16 (2017) - [j14]Björn A. Grüning, Jörg Fallmann, Dilmurat Yusuf, Sebastian Will, Anika Erxleben, Florian Eggenhofer, Torsten Houwaart, Bérénice Batut, Pavankumar Videm, Andrea Bagnacani, Markus Wolfien, Steffen Lott, Youri Hoogstrate, Wolfgang R. Hess, Olaf Wolkenhauer, Steve Hoffmann, Altuna Akalin, Uwe Ohler, Peter F. Stadler, Rolf Backofen:
The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy. Nucleic Acids Res. 45(Webserver-Issue): W560-W566 (2017) - [i1]Helene Kretzmer, Christian Otto, Steve Hoffmann:
BAT: Bisulfite Analysis Toolkit. F1000Research 6: 1490- (2017) - 2016
- [j13]Steve Hoffmann, Peter F. Stadler:
Read mapping. it Inf. Technol. 58(3): 119-125 (2016) - 2015
- [j12]Steve Hoffmann, Peter F. Stadler, Korbinian Strimmer:
A simple data-adaptive probabilistic variant calling model. Algorithms Mol. Biol. 10: 10 (2015) - 2014
- [b1]Steve Hoffmann:
Genome Informatics for High-Throughput Sequencing Data Analysis: Methods and Applications. Leipzig University, Germany, 2014 - [j11]Stefan Rank, Steve Hoffmann, Hans-Georg Struck, Ulrike Spierling, Simon Mayr, Paolo Petta:
Authoring vs. Configuring Affective Agents for Interactive Storytelling. Appl. Artif. Intell. 28(6): 629-645 (2014) - [j10]Christian Otto, Peter F. Stadler, Steve Hoffmann:
Lacking alignments? The next-generation sequencing mapper segemehl revisited. Bioinform. 30(13): 1837-1843 (2014) - [p1]Steve Hoffmann:
Genominformatische Verfahren zur Analyse von Daten der Hochdurchsatzsequenzierung. Ausgezeichnete Informatikdissertationen 2014: 101-110 - 2012
- [j9]David Langenberger, Sachin Pundhir, Claus Thorn Ekstrøm, Peter F. Stadler, Steve Hoffmann, Jan Gorodkin:
deepBlockAlign: a tool for aligning RNA-seq profiles of read block patterns. Bioinform. 28(1): 17-24 (2012) - [j8]Christian Otto, Peter F. Stadler, Steve Hoffmann:
Fast and sensitive mapping of bisulfite-treated sequencing data. Bioinform. 28(13): 1698-1704 (2012) - [c8]Stefan Rank, Steve Hoffmann, Hans-Georg Struck, Ulrike Spierling, Paolo Petta:
Creativity in Configuring Affective Agents for Interactive Storytelling. ICCC 2012: 165-169 - 2011
- [j7]Christian Otto, Steve Hoffmann, Jan Gorodkin, Peter F. Stadler:
Fast local fragment chaining using sum-of-pair gap costs. Algorithms Mol. Biol. 6: 4 (2011) - [j6]Mario Fasold, David Langenberger, Hans Binder, Peter F. Stadler, Steve Hoffmann:
DARIO: a ncRNA detection and analysis tool for next-generation sequencing experiments. Nucleic Acids Res. 39(Web-Server-Issue): 112-117 (2011) - [c7]Florian Glock, Anne Junker, Marina Kraus, Christian Lehrian, Alexander Schäfer, Steve Hoffmann, Ulrike Spierling:
"Office Brawl": a conversational storytelling game and its creation process. Advances in Computer Entertainment Technology 2011: 88 - [c6]Kim Dung Dang, Steve Hoffmann, Ronan Champagnat, Ulrike Spierling:
How Authors Benefit from Linear Logic in the Authoring Process of Interactive Storyworlds. ICIDS 2011: 249-260 - [c5]David Langenberger, Sebastian Bartschat, Jana Hertel, Steve Hoffmann, Hakim Tafer, Peter F. Stadler:
MicroRNA or Not MicroRNA? BSB 2011: 1-9 - 2010
- [j5]Cynthia M. Sharma, Steve Hoffmann, Fabien Darfeuille, Jérémy Reignier, Sven Findeiß, Alexandra Sittka, Sandrine Chabas, Kristin Reiche, Jörg Hackermüller, Richard Reinhardt, Peter F. Stadler, Jörg Vogel:
The primary transcriptome of the major human pathogen Helicobacter pylori. Nat. 464(7286): 250-255 (2010) - [c4]Ulrike Spierling, Steve Hoffmann:
Exploring Narrative Interpretation and Adaptation for Interactive Story Creation. ICIDS 2010: 50-61 - [c3]Ulrike Spierling, Nicolas Szilas, Steve Hoffmann, Urs Richle:
Workshop: Education in Interactive Digital Storytelling. ICIDS 2010: 289-290 - [c2]Ulrike Spierling, Nicolas Szilas, Steve Hoffmann, Urs Richle:
Tutorial: Introduction to Interactive Story Creation. ICIDS 2010: 299-300 - [c1]David Langenberger, Clara Bermudez-Santana, Peter F. Stadler, Steve Hoffmann:
Identification and Classification of Small RNAs in Transcriptome Sequence Data. Pacific Symposium on Biocomputing 2010: 80-87
2000 – 2009
- 2009
- [j4]David Langenberger, Clara Bermudez-Santana, Jana Hertel, Steve Hoffmann, Philipp Khaitovich, Peter F. Stadler:
Evidence for human microRNA-offset RNAs in small RNA sequencing data. Bioinform. 25(18): 2298-2301 (2009) - [j3]K. Scheibye-Alsing, Steve Hoffmann, A. Frankel, Peter Jensen, Peter F. Stadler, Y. Mang, Niels Tommerup, M. J. Gilchrist, A.-B. Nygård, Susanna Cirera, Claus B. Jørgensen, Merete Fredholm, Jan Gorodkin:
Sequence assembly. Comput. Biol. Chem. 33(2): 121-136 (2009) - [j2]Steve Hoffmann, Christian Otto, Stefan Kurtz, Cynthia M. Sharma, Philipp Khaitovich, Jörg Vogel, Peter F. Stadler, Jörg Hackermüller:
Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures. PLoS Comput. Biol. 5(9) (2009) - 2002
- [j1]Konrad Büssow, Steve Hoffmann, Volker Sievert:
ORFer - retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files. BMC Bioinform. 3: 40 (2002)
Coauthor Index
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last updated on 2024-10-22 21:17 CEST by the dblp team
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