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ORCIDNarayanaswamy Srinivasan
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Journal Articles
- 2022
[j33]Neha V. Kalmankar
, Murugavel Pavalam, Sowmya Indrakumar, Narayanaswamy Srinivasan, Ramanathan Sowdhamini:
DSDBASE 2.0: updated version of DiSulphide dataBASE, a database on disulphide bonds in proteins. Database J. Biol. Databases Curation 2022(2022) (2022)- [j32]Pierrick Craveur, Tarun J. Narwani, Narayanaswamy Srinivasan, Jean-Christophe Gelly, Joseph Rebehmed, Alexandre G. de Brevern:
Shaking the β-Bulges. IEEE ACM Trans. Comput. Biol. Bioinform. 19(1): 14-18 (2022) - 2019
- [j31]Guilhem Faure, Agnel Praveen Joseph, Pierrick Craveur, Tarun J. Narwani, Narayanaswamy Srinivasan, Jean-Christophe Gelly, Joseph Rebehmed, Alexandre G. de Brevern:
iPBAvizu: a PyMOL plugin for an efficient 3D protein structure superimposition approach. Source Code Biol. Medicine 14(1) (2019) - 2018
- [j30]Raju Kalaivani, Raju Reema, Narayanaswamy Srinivasan:
Recognition of sites of functional specialisation in all known eukaryotic protein kinase families. PLoS Comput. Biol. 14(2) (2018) - [j29]Sneha Vishwanath, Alexandre G. de Brevern, Narayanaswamy Srinivasan:
Same but not alike: Structure, flexibility and energetics of domains in multi-domain proteins are influenced by the presence of other domains. PLoS Comput. Biol. 14(2) (2018) - 2015
- [j28]Patricia C. Babbitt, Pantelis G. Bagos, Amos Bairoch, Alex Bateman, Arnaud Chatonnet, Mark Jinan Chen, David J. Craik, Robert D. Finn, David E. Gloriam, Daniel H. Haft, Bernard Henrissat, Gemma L. Holliday, Vignir Ísberg, Quentin Kaas, David Landsman, Nicolas Lenfant, Gerard Manning, Nozomi Nagano, Narayanaswamy Srinivasan, Claire O'Donovan, Kim D. Pruitt, Ramanathan Sowdhamini, Neil D. Rawlings, Milton H. Saier Jr., Joanna L. Sharman, Michael Spedding, Konstantinos D. Tsirigos, Åke Västermark, Gerrit Vriend:
Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat. Database J. Biol. Databases Curation 2015 (2015) - [j27]Rahul Metri, Sridhar Hariharaputran, Gayatri Ramakrishnan, Praveen Anand, Upadhyayula S. Raghavender, Bernardo Ochoa-Montaño, Alicia P. Higueruelo, Ramanathan Sowdhamini, Nagasuma R. Chandra, Tom L. Blundell, Narayanaswamy Srinivasan:
SInCRe - structural interactome computational resource for Mycobacterium tuberculosis. Database J. Biol. Databases Curation 2015 (2015) - [j26]Richa Mudgal, Sankaran Sandhya, Gayatri Kumar, Ramanathan Sowdhamini, Nagasuma R. Chandra, Narayanaswamy Srinivasan:
NrichD database: sequence databases enriched with computationally designed protein-like sequences aid in remote homology detection. Nucleic Acids Res. 43(Database-Issue): 300-305 (2015) - 2014
- [j25]Mutharasu Gnanavel, Prachi Mehrotra, Ramaswamy Rakshambikai, Juliette Martin, Narayanaswamy Srinivasan, Ramachandra M. Bhaskara:
CLAP: A web-server for automatic classification of proteins with special reference to multi-domain proteins. BMC Bioinform. 15: 343 (2014) - [j24]R. Rakshambikai, Narayanaswamy Srinivasan, Rupali A. Gadkari:
Repertoire of protein kinases Encoded in the genome of zebrafish shows remarkably Large Population of PIM kinases. J. Bioinform. Comput. Biol. 12(1) (2014) - 2013
- [j23]Swapnil Mahajan, Garima Agarwal, Mohammed Iftekhar, Bernard O. Offmann, Alexandre G. de Brevern, Narayanaswamy Srinivasan:
DoSA: Database of Structural Alignments. Database J. Biol. Databases Curation 2013 (2013) - 2011
- [j22]Oruganty Krishnadev, Narayanaswamy Srinivasan:
AlignHUSH : Alignment of HMMs Using Structure and Hydrophobicity information. BMC Bioinform. 12: 275 (2011) - [j21]Narayanaswamy Srinivasan, Garima Agarwal, Ramachandra M. Bhaskara, Rupali A. Gadkari, Oruganty Krishnadev, B. Lakshmi, Swapnil Mahajan, Smita Mohanty, Richa Mudgal, R. Rakshambikai, Sankaran Sandhya, G. Sudha, L. S. Swapna, N. Tyagi:
Influence of Genomic and Other Biological Data Sets in the Understanding of Protein Structures, Functions and Interactions. Int. J. Knowl. Discov. Bioinform. 2(1): 24-44 (2011) - [j20]Jean-Christophe Gelly, Agnel Praveen Joseph, Narayanaswamy Srinivasan, Alexandre G. de Brevern:
iPBA: a tool for protein structure comparison using sequence alignment strategies. Nucleic Acids Res. 39(Web-Server-Issue): 18-23 (2011) - 2010
- [j19]Oruganty Krishnadev, Shveta Bisht, Narayanaswamy Srinivasan:
Prediction of Protein-Protein Interactions Between Human Host and Two Mycobacterial Organisms. Int. J. Knowl. Discov. Bioinform. 1(1): 1-13 (2010) - 2009
- [j18]Ambrish Roy, Narayanaswamy Srinivasan, Venkatraman S. Gowri:
Molecular and Structural Basis of Drift in the Functions of Closely-Related Homologous Enzyme Domains: Implications for Function Annotation Based on Homology Searches and Structural Genomics. Silico Biol. 9(1-2): S41-S55 (2009) - 2008
- [j17]Oruganty Krishnadev, Narayanaswamy Srinivasan:
A Data Integration Approach to Predict Host-Pathogen Protein-Protein Interactions: Application to Recognize Protein Interactions between Human and a Malarial Parasite. Silico Biol. 8(3-4): 235-250 (2008) - 2007
- [j16]K. G. Tina, Rana Bhadra, Narayanaswamy Srinivasan:
PIC: Protein Interactions Calculator. Nucleic Acids Res. 35(Web-Server-Issue): 473-476 (2007) - 2006
- [j15]V. S. Gowri, Oruganty Krishnadev, C. S. Swamy, Narayanaswamy Srinivasan:
MulPSSM: a database of multiple position-specific scoring matrices of protein domain families. Nucleic Acids Res. 34(Database-Issue): 243-246 (2006) - [j14]Manoj Tyagi, P. Sharma, C. S. Swamy, F. Cadet, Narayanaswamy Srinivasan, Alexandre G. de Brevern, Bernard O. Offmann:
Protein Block Expert (PBE): a web-based protein structure analysis server using a structural alphabet. Nucleic Acids Res. 34(Web-Server-Issue): 119-123 (2006) - [j13]Rana Bhadra, Sankaran Sandhya, K. R. Abhinandan, Saikat Chakrabarti, Ramanathan Sowdhamini, Narayanaswamy Srinivasan:
Cascade PSI-BLAST web server: a remote homology search tool for relating protein domains. Nucleic Acids Res. 34(Web-Server-Issue): 143-146 (2006) - [j12]Ganesan Pugalenthi, Khader Shameer, Narayanaswamy Srinivasan, Ramanathan Sowdhamini:
HARMONY: a server for the assessment of protein structures. Nucleic Acids Res. 34(Web-Server-Issue): 231-234 (2006) - 2005
- [j11]B. Anand, V. S. Gowri, Narayanaswamy Srinivasan:
Use of multiple profiles corresponding to a sequence alignment enables effective detection of remote homologues. Bioinform. 21(12): 2821-2826 (2005) - [j10]Rana Bhadra, Narayanaswamy Srinivasan, Shashi B. Pandit:
A New Domain Family in the Superfamily of Alkaline Phosphatases. Silico Biol. 5(4): 379-387 (2005) - [j9]Oruganty Krishnadev, N. Rekha, Shashi B. Pandit, S. Abhiman, Smita Mohanty, L. S. Swapna, Swanand P. Gore, Narayanaswamy Srinivasan:
PRODOC: a resource for the comparison of tethered protein domain architectures with in-built information on remotely related domain families. Nucleic Acids Res. 33(Web-Server-Issue): 126-129 (2005) - 2004
- [j8]Shashi B. Pandit, Rana Bhadra, V. S. Gowri, S. Balaji, B. Anand, Narayanaswamy Srinivasan:
SUPFAM: A database of sequence superfamilies of protein domains. BMC Bioinform. 5: 28 (2004) - [j7]Seema Namboori, Narayanaswamy Srinivasan, Shashi B. Pandit:
Recognition of remotely related structural homologues using sequence profiles of aligned homologous protein structures. Silico Biol. 4(4): 445-460 (2004) - [j6]Shashi B. Pandit, Narayanaswamy Srinivasan:
Identification and analysis of a new family of bacterial serine proteinases. Silico Biol. 4(4): 563-572 (2004) - [j5]A. Krupa, K. R. Abhinandan, Narayanaswamy Srinivasan:
KinG: a database of protein kinases in genomes. Nucleic Acids Res. 32(Database-Issue): 153-155 (2004) - 2003
- [j4]V. S. Gowri, Shashi B. Pandit, P. S. Karthik, Narayanaswamy Srinivasan, S. Balaji:
Integration of related sequences with protein three-dimensional structural families in an updated version of PALI database. Nucleic Acids Res. 31(1): 486-488 (2003) - 2002
- [j3]Shashi B. Pandit, Dilip Gosar, S. Abhiman, S. Sujatha, Sayali S. Dixit, Natasha S. Mhatre, Ramanathan Sowdhamini, Narayanaswamy Srinivasan:
SUPFAM - a database of potential protein superfamily relationships derived by comparing sequence-based and structure-based families: implications for structural genomics and function annotation in genomes. Nucleic Acids Res. 30(1): 289-293 (2002) - 2001
- [j2]S. Sujatha, S. Balaji, Narayanaswamy Srinivasan:
PALI: a database of alignments and phylogeny of homologous protein structures. Bioinform. 17(4): 375-376 (2001) - [j1]S. Balaji, S. Sujatha, S. Sai Chetan Kumar, Narayanaswamy Srinivasan:
PALI - a database of Phylogeny and ALIgnment of homologous protein structures. Nucleic Acids Res. 29(1): 61-65 (2001)
Conference and Workshop Papers
- 2009
- [c1]Smita Mohanty, Narayanaswamy Srinivasan:
How effective is the data on co-occurrence of domains in multi-domain proteins in prediction of protein-protein interactions? GENSiPS 2009: 1-4
Coauthor Index
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