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Journal Articles
- 2022
[j12]Elmer V. Bernstam, Jeremy L. Warner, John C. Krauss
, Edward P. Ambinder, Wendy S. Rubinstein, George Komatsoulis, Robert S. Miller, James L. Chen:
Quantitating and assessing interoperability between electronic health records. J. Am. Medical Informatics Assoc. 29(5): 753-760 (2022)- 2020
- [j11]Nathan D. Seligson, Jeremy L. Warner, William S. Dalton, David Martin, Robert S. Miller, Debra Patt, Kenneth L. Kehl, Matvey B. Palchuk, Gil Alterovitz, Laura K. Wiley, Ming Huang, Feichen Shen, Yanshan Wang, Khoa A. Nguyen, Anthony F. Wong, Funda Meric-Bernstam, Elmer V. Bernstam, James L. Chen:
Recommendations for patient similarity classes: results of the AMIA 2019 workshop on defining patient similarity. J. Am. Medical Informatics Assoc. 27(11): 1808-1812 (2020) - 2016
- [j10]A. Grant Schissler, Qike Li, James L. Chen, Colleen Kenost, Ikbel Achour, Dean Billheimer, Haiquan Li, Walter W. Piegorsch, Yves A. Lussier:
Analysis of aggregated cell-cell statistical distances within pathways unveils therapeutic-resistance mechanisms in circulating tumor cells. Bioinform. 32(12): 80-89 (2016) - 2013
- [j9]Younghee Lee, Haiquan Li, Jianrong Li, Ellen Rebman, Ikbel Achour, Kelly Regan, Eric R. Gamazon, James L. Chen, Xinan Holly Yang, Nancy J. Cox, Yves A. Lussier:
Research and applications: Network models of genome-wide association studies uncover the topological centrality of protein interactions in complex diseases. J. Am. Medical Informatics Assoc. 20(4): 619-629 (2013) - 2012
- [j8]Yves A. Lussier, Walter M. Stadler, James L. Chen:
Advantages of genomic complexity: bioinformatics opportunities in microRNA cancer signatures. J. Am. Medical Informatics Assoc. 19(2): 156-160 (2012) - [j7]Haiquan Li, Younghee Lee, James L. Chen, Ellen Rebman, Jianrong Li, Yves A. Lussier:
Complex-disease networks of trait-associated single-nucleotide polymorphisms (SNPs) unveiled by information theory. J. Am. Medical Informatics Assoc. 19(2): 295-305 (2012) - 2011
- [j6]James L. Chen, Jianrong Li, Walter M. Stadler, Yves A. Lussier:
Protein-network modeling of prostate cancer gene signatures reveals essential pathways in disease recurrence. J. Am. Medical Informatics Assoc. 18(4): 392-402 (2011) - 2010
- [j5]Xinan Yang, Younghee Lee, Yong Huang, James L. Chen, H. Rosie Xing, Yves A. Lussier:
Stromal microenvironment processes unveiled by biological component analysis of gene expression in xenograft tumor models. BMC Bioinform. 11(S-9): S11 (2010) - [j4]James L. Chen, Lee T. Sam, Yong Huang, Younghee Lee, Jianrong Li, Yang Liu, H. Rosie Xing, Yves A. Lussier:
Protein interaction network underpins concordant prognosis among heterogeneous breast cancer signatures. J. Biomed. Informatics 43(3): 385-396 (2010) - 2009
- [j3]Xinan Yang, Yong Huang, James L. Chen, Jianming Xie, Xiao Sun, Yves A. Lussier:
Mechanism-anchored profiling derived from epigenetic networks predicts outcome in acute lymphoblastic leukemia. BMC Bioinform. 10(S-9): 6 (2009) - 2007
- [j2]James L. Chen, Yang Liu, Lee T. Sam, Jianrong Li, Yves A. Lussier:
Evaluation of high-throughput functional categorization of human disease genes. BMC Bioinform. 8(S-3) (2007) - [j1]Sylvain V. Costes, Artem L. Ponomarev, James L. Chen, David Nguyen, Francis A. Cucinotta, Mary Helen Barcellos-Hoff:
Image-Based Modeling Reveals Dynamic Redistribution of DNA Damage into Nuclear Sub-Domains. PLoS Comput. Biol. 3(8) (2007)
Conference and Workshop Papers
- 2019
- [c2]Elmer V. Bernstam, Jeremy L. Warner, John C. Krauss, Edward P. Ambinder, Wendy S. Rubinstein, George Komatsoulis, Robert S. Miller, James L. Chen:
Continuum of Interoperability in Oncology EHR Implementations. AMIA 2019 - 2013
- [c1]Chaitanya Shivade, James L. Chen:
Classifier-Free, Integrated Genomic Predictions of Prostate Cancer Recurrence. MedInfo 2013: 1177
Reference Works
- 2018
- [r2]Yves A. Lussier, James L. Chen:
Clinical Ontologies. Encyclopedia of Database Systems (2nd ed.) 2018 - 2009
- [r1]Yves A. Lussier, James L. Chen:
Clinical Ontologies. Encyclopedia of Database Systems 2009: 360-363
Informal and Other Publications
- 2015
- [i1]Preethi Raghavan, James L. Chen, Eric Fosler-Lussier, Albert M. Lai:
How essential are unstructured clinical narratives and information fusion to clinical trial recruitment? CoRR abs/1502.04049 (2015)
Coauthor Index
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