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ORCIDMichelle S. Scott
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Journal Articles
- 2023
[j20]Sébastien Leblanc
, Marie A. Brunet, Jean-Francois Jacques, Amina M. Lekehal, Andréa Duclos, Alexia Tremblay, Alexis Bruggeman-Gascon, Sondos Samandi, Mylène Brunelle, Alan A. Cohen, Michelle S. Scott, Xavier Roucou:
Newfound Coding Potential of Transcripts Unveils Missing Members of Human Protein Communities. Genom. Proteom. Bioinform. 21(3): 515-534 (2023)- [j19]Danny Bergeron, Hermes Paraqindes, Étienne Fafard-Couture, Gabrielle Deschamps-Francoeur, Laurence Faucher-Giguère, Philia Bouchard-Bourelle, Sherif Abou Elela, Frédéric Catez, Virginie Marcel, Michelle S. Scott:
snoDB 2.0: an enhanced interactive database, specializing in human snoRNAs. Nucleic Acids Res. 51(D1): 291-296 (2023) - 2022
- [j18]Delong Zhou, Yvan Tran, Sherif Abou Elela, Michelle S. Scott:
SAPFIR: A webserver for the identification of alternative protein features. BMC Bioinform. 23(1): 250 (2022) - 2021
- [j17]Joël Simoneau, Simon Dumontier, Ryan Gosselin, Michelle S. Scott:
Current RNA-seq methodology reporting limits reproducibility. Briefings Bioinform. 22(1): 140-145 (2021) - [j16]Blake A. Sweeney, Anton I. Petrov, Carlos Eduardo Ribas, Robert D. Finn, Alex Bateman, Maciej Szymanski, Wojciech M. Karlowski, Stefan E. Seemann, Jan Gorodkin, Jamie J. Cannone, Robin Ray Gutell, Simon Kay, Steven J. Marygold, Gilberto dos Santos, Adam Frankish, Jonathan M. Mudge, Ruth Barshir, Simon Fishilevich, Patricia P. Chan, Todd M. Lowe, Ruth L. Seal, Elspeth A. Bruford, Simona Panni, Pablo Porras, Dimitra Karagkouni, Artemis G. Hatzigeorgiou, Lina Ma, Zhang Zhang, Pieter-Jan Volders, Pieter Mestdagh, Sam Griffiths-Jones, Bastian Fromm, Kevin J. Peterson, Ioanna Kalvari, Eric P. Nawrocki, Anton S. Petrov, Shuai Weng, Philia Bouchard-Bourelle, Michelle S. Scott, Lauren M. Lui, David Hoksza, Ruth C. Lovering, Barbara Kramarz, Prita Mani, Sridhar Ramachandran, Zasha Weinberg:
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases. Nucleic Acids Res. 49(Database-Issue): D212-D220 (2021) - [j15]Marie A. Brunet, Jean-François Lucier, Maxime Levesque, Sébastien Leblanc, Jean-Francois Jacques, Hassan R. H. Al-Saedi, Noé Guilloy, Frédéric Grenier, Mariano Avino, Isabelle Fournier, Michel Salzet, Aïda Ouangraoua, Michelle S. Scott, François-Michel Boisvert, Xavier Roucou:
OpenProt 2021: deeper functional annotation of the coding potential of eukaryotic genomes. Nucleic Acids Res. 49(Database-Issue): D380-D388 (2021) - 2020
- [j14]Philia Bouchard-Bourelle, Clément Desjardins-Henri, Darren Mathurin-St-Pierre, Gabrielle Deschamps-Francoeur, Étienne Fafard-Couture, Jean-Michel Garant, Sherif Abou Elela, Michelle S. Scott:
snoDB: an interactive database of human snoRNA sequences, abundance and interactions. Nucleic Acids Res. 48(Database-Issue): D220-D225 (2020) - 2019
- [j13]Gabrielle Deschamps-Francoeur, Vincent Boivin, Sherif Abou Elela, Michelle S. Scott:
CoCo: RNA-seq read assignment correction for nested genes and multimapped reads. Bioinform. 35(23): 5039-5047 (2019) - [j12]Marie A. Brunet, Mylène Brunelle, Jean-François Lucier, Vivian Delcourt, Maxime Levesque, Frédéric Grenier, Sondos Samandi, Sébastien Leblanc, Jean-David Aguilar, Pascal Dufour, Jean-Francois Jacques, Isabelle Fournier, Aïda Ouangraoua, Michelle S. Scott, François-Michel Boisvert, Xavier Roucou:
OpenProt: a more comprehensive guide to explore eukaryotic coding potential and proteomes. Nucleic Acids Res. 47(Database-Issue): D403-D410 (2019) - 2017
- [j11]Safa Jammali, Esaie Kuitche, Ayoub Rachati, François Bélanger, Michelle S. Scott, Aïda Ouangraoua:
Aligning coding sequences with frameshift extension penalties. Algorithms Mol. Biol. 12(1): 10:1-10:18 (2017) - [j10]Jean-Michel Garant, Jean-Pierre Perreault, Michelle S. Scott:
Motif independent identification of potential RNA G-quadruplexes by G4RNA screener. Bioinform. 33(22): 3532-3537 (2017) - 2015
- [j9]Jean-Michel Garant, Mikael J. Luce, Michelle S. Scott, Jean-Pierre Perreault:
G4RNA: an RNA G-quadruplex database. Database J. Biol. Databases Curation 2015 (2015) - 2011
- [j8]Michelle S. Scott, Peter V. Troshin, Geoffrey J. Barton:
NoD: a Nucleolar localization sequence detector for eukaryotic and viral proteins. BMC Bioinform. 12: 317 (2011) - 2010
- [j7]Mark D. McDowall, Michelle S. Scott, Geoffrey J. Barton:
Human protein-protein interaction prediction. BMC Bioinform. 11(S-10): P1 (2010) - 2009
- [j6]Mark D. McDowall, Michelle S. Scott, Geoffrey J. Barton:
PIPs: human protein-protein interaction prediction database. Nucleic Acids Res. 37(Database-Issue): 651-656 (2009) - [j5]Michelle S. Scott, Fabio Avolio, Motoharu Ono, Angus I. Lamond, Geoffrey J. Barton:
Human miRNA Precursors with Box H/ACA snoRNA Features. PLoS Comput. Biol. 5(9) (2009) - 2007
- [j4]Michelle S. Scott, Geoffrey J. Barton:
Probabilistic prediction and ranking of human protein-protein interactions. BMC Bioinform. 8 (2007) - [j3]Michelle S. Scott, Geoffrey J. Barton:
Prediction and ranking of human protein-protein interactions within a Bayesian framework. BMC Syst. Biol. 1(S-1): P66 (2007) - 2005
- [j2]Michelle S. Scott, Sara J. Calafell, David Y. Thomas, Michael T. Hallett:
Refining Protein Subcellular Localization. PLoS Comput. Biol. 1(6) (2005) - 2004
- [j1]Michelle S. Scott, Guoqing Lu, Michael T. Hallett, David Y. Thomas:
The Hera database and its use in the characterization of endoplasmic reticulum proteins. Bioinform. 20(6): 937-944 (2004)
Informal and Other Publications
- 2016
- [i1]Safa Jammali, Esaie Kuitche, Ayoub Rachati, François Bélanger, Michelle S. Scott, Aïda Ouangraoua:
Aligning coding sequences with frameshift extension penalties. CoRR abs/1610.08809 (2016)
Coauthor Index
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