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2020 – today
- 2024
[j28]Hamza Kebiri
, Ali Gholipour, Rizhong Lin, Lana Vasung, Camilo Calixto, Zeljka Krsnik, Davood Karimi, Meritxell Bach Cuadra:
Deep learning microstructure estimation of developing brains from diffusion MRI: A newborn and fetal study. Medical Image Anal. 95: 103186 (2024)- [j27]Thomas Sanchez, Oscar Esteban, Yvan Gomez, Alexandre Pron, Mériam Koob, Vincent Dunet, Nadine Girard, András Jakab, Elisenda Eixarch, Guillaume Auzias, Meritxell Bach Cuadra:
FetMRQC: A robust quality control system for multi-centric fetal brain MRI. Medical Image Anal. 97: 103282 (2024) - [c46]Rizhong Lin, Ali Gholipour, Jean-Philippe Thiran, Davood Karimi, Hamza Kebiri, Meritxell Bach Cuadra:
Cross-Age and Cross-Site Domain Shift Impacts on Deep Learning-Based White Matter Fiber Estimation in Newborn and Baby Brains. ISBI 2024: 1-5 - [c45]Maxence Wynen, Maxime Istasse, Pedro M. Gordaliza, Anna Stölting, Pietro Maggi, Benoît Macq, Meritxell Bach Cuadra:
Conflunet: Improving Confluent Lesion Identification In Multiple Sclerosis With Instance Segmentation. ISBI 2024: 1-5 - [c44]Thomas Sanchez, Angeline Mihailov, Yvan Gomez, Gerard Martí Juan, Elisenda Eixarch, András Jakab, Vincent Dunet, Mériam Koob, Guillaume Auzias, Meritxell Bach Cuadra:
Assessing Data Quality on Fetal Brain MRI Reconstruction: A Multi-site and Multi-rater Study. PIPPI@MICCAI 2024: 46-56 - [c43]Vladyslav Zalevskyi, Thomas Sanchez, Margaux Roulet, Jordina Aviles Verdera, Jana Hutter, Hamza Kebiri, Meritxell Bach Cuadra:
Improving Cross-Domain Brain Tissue Segmentation in Fetal MRI with Synthetic Data. MICCAI (1) 2024: 437-447 - [i29]Vladyslav Zalevskyi, Thomas Sanchez, Margaux Roulet, Jordina Aviles Verdera, Jana Hutter, Hamza Kebiri, Meritxell Bach Cuadra:
Improving cross-domain brain tissue segmentation in fetal MRI with synthetic data. CoRR abs/2403.15103 (2024) - [i28]Federico Spagnolo, Nataliia Molchanova, Roger Schaer, Meritxell Bach Cuadra, Mario Ocampo-Pineda, Lester Melie-García, Cristina Granziera, Vincent Andrearczyk, Adrien Depeursinge:
Instance-level quantitative saliency in multiple sclerosis lesion segmentation. CoRR abs/2406.09335 (2024) - [i27]Nataliia Molchanova, Alessandro Cagol, Pedro M. Gordaliza, Mario Ocampo-Pineda, Po-Jui Lu, Matthias Weigel, Xinjie Chen, Adrien Depeursinge, Cristina Granziera, Henning Müller, Meritxell Bach Cuadra:
Interpretability of Uncertainty: Exploring Cortical Lesion Segmentation in Multiple Sclerosis. CoRR abs/2407.05761 (2024) - [i26]Rizhong Lin, Hamza Kebiri, Ali Gholipour, Yufei Chen, Jean-Philippe Thiran, Davood Karimi, Meritxell Bach Cuadra:
Ground-truth effects in learning-based fiber orientation distribution estimation in neonatal brains. CoRR abs/2409.01195 (2024) - [i25]Federico Spagnolo, Nataliia Molchanova, Mario Ocampo-Pineda, Lester Melie-García, Meritxell Bach Cuadra, Cristina Granziera, Vincent Andrearczyk, Adrien Depeursinge:
Exploiting XAI maps to improve MS lesion segmentation and detection in MRI. CoRR abs/2409.03772 (2024) - 2023
- [j26]Kelly Payette, Hongwei Bran Li, Priscille de Dumast, Roxane Licandro, Hui Ji, Md Mahfuzur Rahman Siddiquee, Daguang Xu, Andriy Myronenko, Hao Liu, Yuchen Pei, Lisheng Wang, Ying Peng, Juanying Xie, Huiquan Zhang, Guiming Dong, Hao Fu, Guotai Wang, ZunHyan Rieu, Donghyeon Kim, Hyun Gi Kim, Davood Karimi, Ali Gholipour, Helena R. Torres, Bruno Oliveira, João L. Vilaça, Yang Lin, Netanell Avisdris, Ori Ben-Zvi, Dafna Ben-Bashat, Lucas Fidon, Michael Aertsen, Tom Vercauteren, Daniel Sobotka, Georg Langs, Mireia Alenyà, Maria Inmaculada Villanueva, Oscar Camara, Bella Specktor-Fadida, Leo Joskowicz, Liao Weibin, Lv Yi, Xuesong Li, Moona Mazher, Abdul Qayyum, Domenec Puig, Hamza Kebiri, Zelin Zhang, Xinyi Xu, Dan Wu, KuanLun Liao, YiXuan Wu, JinTai Chen, Yunzhi Xu, Li Zhao, Lana Vasung, Bjoern H. Menze, Meritxell Bach Cuadra, András Jakab:
Fetal brain tissue annotation and segmentation challenge results. Medical Image Anal. 88: 102833 (2023) - [j25]Cristina Sainz Martinez, Meritxell Bach Cuadra, João Jorge:
BigBrain-MR: a new digital phantom with anatomically-realistic magnetic resonance properties at 100-µm resolution for magnetic resonance methods development. NeuroImage 273: 120074 (2023) - [j24]Tommaso Di Noto, Guillaume Marie, Sébastien Tourbier, Yasser Alemán-Gómez, Oscar Esteban, Guillaume Saliou, Meritxell Bach Cuadra, Patric Hagmann, Jonas Richiardi:
Towards Automated Brain Aneurysm Detection in TOF-MRA: Open Data, Weak Labels, and Anatomical Knowledge. Neuroinformatics 21(1): 21-34 (2023) - [c42]Priscille de Dumast, Meritxell Bach Cuadra:
Domain Generalization in Fetal Brain MRI Segmentation with Multi-Reconstruction Augmentation. ISBI 2023: 1-5 - [c41]Kay Lächler, Hélène Lajous, Michael Unser, Meritxell Bach Cuadra, Pol del Aguila Pla:
Self-Supervised Isotropic Superresolution Fetal Brain MRI. ISBI 2023: 1-5 - [c40]Nataliia Molchanova, Vatsal Raina, Andrey Malinin, Francesco La Rosa, Henning Müller, Mark J. F. Gales, Cristina Granziera, Mara Graziani, Meritxell Bach Cuadra:
Novel Structural-Scale Uncertainty Measures and Error Retention Curves: Application to Multiple Sclerosis. ISBI 2023: 1-5 - [c39]Vatsal Raina, Nataliia Molchanova, Mara Graziani, Andrey Malinin, Henning Müller, Meritxell Bach Cuadra, Mark J. F. Gales:
Tackling Bias in the Dice Similarity Coefficient: Introducing NDSC for White Matter Lesion Segmentation. ISBI 2023: 1-5 - [c38]Thomas Sanchez, Oscar Esteban, Yvan Gomez, Elisenda Eixarch, Meritxell Bach Cuadra:
FetMRQC: Automated Quality Control for Fetal Brain MRI. PIPPI@MICCAI 2023: 3-16 - [c37]Hamza Kebiri, Ali Gholipour, Rizhong Lin, Lana Vasung, Davood Karimi, Meritxell Bach Cuadra:
Robust Estimation of the Microstructure of the Early Developing Brain Using Deep Learning. MICCAI (7) 2023: 293-303 - [c36]Priscille de Dumast, Thomas Sanchez, Hélène Lajous, Meritxell Bach Cuadra:
Simulation-Based Parameter Optimization for Fetal Brain MRI Super-Resolution Reconstruction. MICCAI (7) 2023: 336-346 - [i24]Vatsal Raina, Nataliia Molchanova, Mara Graziani, Andrey Malinin, Henning Müller, Meritxell Bach Cuadra, Mark J. F. Gales:
Tackling Bias in the Dice Similarity Coefficient: Introducing nDSC for White Matter Lesion Segmentation. CoRR abs/2302.05432 (2023) - [i23]Thomas Sanchez, Oscar Esteban, Yvan Gomez, Elisenda Eixarch, Meritxell Bach Cuadra:
FetMRQC: Automated Quality Control for fetal brain MRI. CoRR abs/2304.05879 (2023) - [i22]Hamza Kebiri, Ali Gholipour, Meritxell Bach Cuadra, Davood Karimi:
Direct segmentation of brain white matter tracts in diffusion MRI. CoRR abs/2307.02223 (2023) - [i21]Thomas Sanchez, Oscar Esteban, Yvan Gomez, Alexandre Pron, Mériam Koob, Vincent Dunet, Nadine Girard, András Jakab, Elisenda Eixarch, Guillaume Auzias, Meritxell Bach Cuadra:
FetMRQC: an open-source machine learning framework for multi-centric fetal brain MRI quality control. CoRR abs/2311.04780 (2023) - [i20]Nataliia Molchanova, Vatsal Raina, Andrey Malinin, Francesco La Rosa, Adrien Depeursinge, Mark J. F. Gales, Cristina Granziera, Henning Müller, Mara Graziani, Meritxell Bach Cuadra:
Structural-Based Uncertainty in Deep Learning Across Anatomical Scales: Analysis in White Matter Lesion Segmentation. CoRR abs/2311.08931 (2023) - [i19]Rizhong Lin, Ali Gholipour, Jean-Philippe Thiran, Davood Karimi, Hamza Kebiri, Meritxell Bach Cuadra:
Cross-Age and Cross-Site Domain Shift Impacts on Deep Learning-Based White Matter Fiber Estimation in Newborn and Baby Brains. CoRR abs/2312.14773 (2023) - 2022
- [j23]Sébastien Tourbier, Joan Rué Queralt, Katharina Glomb, Yasser Alemán-Gómez, Emeline Mullier, Alessandra Griffa, Mikkel Schöttner, Jonathan Wirsich, Mustafa Anil Tuncel, Jakub Jancovic, Meritxell Bach Cuadra, Patric Hagmann:
Connectome Mapper 3: A Flexible and Open-Source Pipeline Software for Multiscale Multimodal Human Connectome Mapping. J. Open Source Softw. 7(74): 4248 (2022) - [c35]Priscille de Dumast, Hamza Kebiri, Kelly Payette, András Jakab, Hélène Lajous, Meritxell Bach Cuadra:
Synthetic Magnetic Resonance Images for Domain Adaptation: Application to Fetal Brain Tissue Segmentation. ISBI 2022: 1-5 - [c34]Hamza Kebiri, Gabriel Girard, Yasser Alemán-Gómez, Thomas Yu, András Jakab, Erick Jorge Canales-Rodríguez, Meritxell Bach Cuadra:
Slice Estimation in Diffusion MRI of Neonatal and Fetal Brains in Image and Spherical Harmonics Domains Using Autoencoders. CDMRI@MICCAI 2022: 3-13 - [c33]Athena Taymourtash, Hamza Kebiri, Ernst Schwartz, Karl-Heinz Nenning, Sébastien Tourbier, Gregor Kasprian, Daniela Prayer, Meritxell Bach Cuadra, Georg Langs:
Spatio-Temporal Motion Correction and Iterative Reconstruction of In-Utero Fetal fMRI. MICCAI (6) 2022: 603-612 - [i18]Francesco La Rosa, Maxence Wynen, Omar Al-Louzi, Erin S. Beck, Till Huelnhagen, Pietro Maggi, Jean-Philippe Thiran, Tobias Kober, Russell T. Shinohara, Pascal Sati, Daniel S. Reich, Cristina Granziera, Martina Absinta, Meritxell Bach Cuadra:
Cortical lesions, central vein sign, and paramagnetic rim lesions in multiple sclerosis: emerging machine learning techniques and future avenues. CoRR abs/2201.07463 (2022) - [i17]Thomas Yu, Tom Hilbert, Gian Franco Piredda, Arun Joseph, Gabriele Bonanno, Salim Zenkhri, Patrick Omoumi, Meritxell Bach Cuadra, Erick Jorge Canales-Rodríguez, Tobias Kober, Jean-Philippe Thiran:
Validation and Generalizability of Self-Supervised Image Reconstruction Methods for Undersampled MRI. CoRR abs/2201.12535 (2022) - [i16]Kelly Payette, Hongwei Li, Priscille de Dumast, Roxane Licandro, Hui Ji, Md Mahfuzur Rahman Siddiquee, Daguang Xu, Andriy Myronenko, Hao Liu, Yuchen Pei, Lisheng Wang, Ying Peng, Juanying Xie, Huiquan Zhang, Guiming Dong, Hao Fu, Guotai Wang, ZunHyan Rieu, Donghyeon Kim, Hyun Gi Kim, Davood Karimi, Ali Gholipour, Helena R. Torres, Bruno Oliveira, João L. Vilaça, Yang Lin, Netanell Avisdris, Ori Ben-Zvi, Dafna Ben-Bashat, Lucas Fidon, Michael Aertsen, Tom Vercauteren, Daniel Sobotka, Georg Langs, Mireia Alenyà, Maria Inmaculada Villanueva, Oscar Camara, Bella Specktor-Fadida, Leo Joskowicz, Weibin Liao, Lv Yi, Xuesong Li, Moona Mazher, Abdul Qayyum, Domenec Puig, Hamza Kebiri, Zelin Zhang, Xinyi Xu, Dan Wu, KuanLun Liao, YiXuan Wu, JinTai Chen, Yunzhi Xu, Li Zhao, Lana Vasung, Bjoern H. Menze, Meritxell Bach Cuadra, András Jakab:
Fetal Brain Tissue Annotation and Segmentation Challenge Results. CoRR abs/2204.09573 (2022) - [i15]Andrey Malinin, Andreas Athanasopoulos, Muhamed Barakovic, Meritxell Bach Cuadra, Mark J. F. Gales, Cristina Granziera, Mara Graziani, Nikolay Kartashev, Konstantinos Kyriakopoulos, Po-Jui Lu, Nataliia Molchanova, Antonis Nikitakis, Vatsal Raina, Francesco La Rosa, Eli Sivena, Vasileios Tsarsitalidis, Efi Tsompopoulou, Elena Volf:
Shifts 2.0: Extending The Dataset of Real Distributional Shifts. CoRR abs/2206.15407 (2022) - [i14]Tommaso Di Noto, Meritxell Bach Cuadra, Chirine Atat, Eduardo Gamito Teiga, Monika Hegi, Andreas Hottinger, Patric Hagmann, Jonas Richiardi:
Transfer learning with weak labels from radiology reports: application to glioma change detection. CoRR abs/2210.09698 (2022) - [i13]Nataliia Molchanova, Vatsal Raina, Andrey Malinin, Francesco La Rosa, Henning Müller, Mark J. F. Gales, Cristina Granziera, Mara Graziani, Meritxell Bach Cuadra:
Novel structural-scale uncertainty measures and error retention curves: application to multiple sclerosis. CoRR abs/2211.04825 (2022) - [i12]Kay Lächler, Hélène Lajous, Michael Unser, Meritxell Bach Cuadra, Pol del Aguila Pla:
Self-Supervised Isotropic Superresolution Fetal Brain MRI. CoRR abs/2211.06502 (2022) - [i11]Priscille de Dumast, Meritxell Bach Cuadra:
Domain generalization in fetal brain MRI segmentation \\with multi-reconstruction augmentation. CoRR abs/2211.14282 (2022) - 2021
- [j22]Francesco La Rosa, Thomas Yu, Germán Barquero, Jean-Philippe Thiran, Cristina Granziera, Meritxell Bach Cuadra:
MPRAGE to MP2RAGE UNI translation via generative adversarial network improves the automatic tissue and lesion segmentation in multiple sclerosis patients. Comput. Biol. Medicine 132: 104297 (2021) - [j21]Thomas Yu, Erick Jorge Canales-Rodríguez, Marco Pizzolato, Gian Franco Piredda, Tom Hilbert, Elda Fischi Gomez, Matthias Weigel, Muhamed Barakovic, Meritxell Bach Cuadra, Cristina Granziera, Tobias Kober, Jean-Philippe Thiran:
Model-informed machine learning for multi-component T2 relaxometry. Medical Image Anal. 69: 101940 (2021) - [c32]Hamza Kebiri, Hélène Lajous, Yasser Alemán-Gómez, Gabriel Girard, Erick Jorge Canales-Rodríguez, Sébastien Tourbier, Marco Pizzolato, Jean-Baptiste Ledoux, Eleonora Fornari, András Jakab, Meritxell Bach Cuadra:
Quantitative Evaluation of Enhanced Multi-plane Clinical Fetal Diffusion MRI with a Crossing-Fiber Phantom. CDMRI@MICCAI 2021: 12-22 - [c31]Hélène Lajous, Tom Hilbert, Christopher W. Roy, Sébastien Tourbier, Priscille de Dumast, Yasser Alemán-Gómez, Thomas Yu, Hamza Kebiri, Jean-Baptiste Ledoux, Patric Hagmann, Reto Meuli, Vincent Dunet, Mériam Koob, Matthias Stuber, Tobias Kober, Meritxell Bach Cuadra:
Simulated Half-Fourier Acquisitions Single-shot Turbo Spin Echo (HASTE) of the Fetal Brain: Application to Super-Resolution Reconstruction. UNSURE/PIPPI@MICCAI 2021: 157-167 - [c30]Priscille de Dumast, Hamza Kebiri, Chirine Atat, Vincent Dunet, Mériam Koob, Meritxell Bach Cuadra:
Segmentation of the Cortical Plate in Fetal Brain MRI with a Topological Loss. UNSURE/PIPPI@MICCAI 2021: 200-209 - [c29]Tommaso Di Noto, Chirine Atat, Eduardo Gamito Teiga, Monika Hegi, Andreas Hottinger, Meritxell Bach Cuadra, Patric Hagmann, Jonas Richiardi:
Diagnostic Surveillance of High-Grade Gliomas: Towards Automated Change Detection Using Radiology Report Classification. PKDD/ECML Workshops (2) 2021: 423-436 - [i10]Tommaso Di Noto, Guillaume Marie, Sébastien Tourbier, Yasser Alemán-Gómez, Oscar Esteban, Guillaume Saliou, Meritxell Bach Cuadra, Patric Hagmann, Jonas Richiardi:
Weak labels and anatomical knowledge: making deep learning practical for intracranial aneurysm detection in TOF-MRA. CoRR abs/2103.06168 (2021) - [i9]Hélène Lajous, Christopher W. Roy, Tom Hilbert, Priscille de Dumast, Sébastien Tourbier, Yasser Alemán-Gómez, Jérôme Yerly, Thomas Yu, Hamza Kebiri, Kelly Payette, Jean-Baptiste Ledoux, Reto Meuli, Patric Hagmann, András Jakab, Vincent Dunet, Mériam Koob, Tobias Kober, Matthias Stuber, Meritxell Bach Cuadra:
FaBiAN: A Fetal Brain magnetic resonance Acquisition Numerical phantom. CoRR abs/2109.03624 (2021) - [i8]Priscille de Dumast, Hamza Kebiri, Kelly Payette, András Jakab, Hélène Lajous, Meritxell Bach Cuadra:
Synthetic magnetic resonance images for domain adaptation: Application to fetal brain tissue segmentation. CoRR abs/2111.04737 (2021) - [i7]Athena Taymourtash, Hamza Kebiri, Sébastien Tourbier, Ernst Schwartz, Karl-Heinz Nenning, Roxane Licandro, Daniel Sobotka, Hélène Lajous, Priscille de Dumast, Meritxell Bach Cuadra, Georg Langs:
4D iterative reconstruction of brain fMRI in the moving fetus. CoRR abs/2111.11394 (2021) - 2020
- [j20]Maria Deprez, Anthony Price, Daan Christiaens, Georgia Lockwood Estrin, Lucilio Cordero-Grande, Jana Hutter, Alessandro Daducci, Jacques-Donald Tournier, Mary A. Rutherford, Serena J. Counsell, Meritxell Bach Cuadra, Joseph V. Hajnal:
Higher Order Spherical Harmonics Reconstruction of Fetal Diffusion MRI With Intensity Correction. IEEE Trans. Medical Imaging 39(4): 1104-1113 (2020) - [c28]Tommaso Di Noto, Guillaume Marie, Sébastien Tourbier, Yasser Alemán-Gómez, Guillaume Saliou, Meritxell Bach Cuadra, Patric Hagmann, Jonas Richiardi:
An Anatomically-Informed 3D CNN for Brain Aneurysm Classification with Weak Labels. MLCN/RNO-AI@MICCAI 2020: 56-66 - [c27]Hélène Lajous, Tom Hilbert, Christopher W. Roy, Sébastien Tourbier, Priscille de Dumast, Thomas Yu, Jean-Philippe Thiran, Jean-Baptiste Ledoux, Davide Piccini, Patric Hagmann, Reto Meuli, Tobias Kober, Matthias Stuber, Ruud B. van Heeswijk, Meritxell Bach Cuadra:
T2 Mapping from Super-Resolution-Reconstructed Clinical Fast Spin Echo Magnetic Resonance Acquisitions. MICCAI (2) 2020: 114-124 - [c26]Francesco La Rosa, Erin S. Beck, Ahmed Abdulkadir, Jean-Philippe Thiran, Daniel S. Reich, Pascal Sati, Meritxell Bach Cuadra:
Automated Detection of Cortical Lesions in Multiple Sclerosis Patients with 7T MRI. MICCAI (4) 2020: 584-593 - [i6]Francesco La Rosa, Erin S. Beck, Ahmed Abdulkadir, Jean-Philippe Thiran, Daniel S. Reich, Pascal Sati, Meritxell Bach Cuadra:
Automated Detection of Cortical Lesions in Multiple Sclerosis Patients with 7T MRI. CoRR abs/2008.06780 (2020) - [i5]Priscille de Dumast, Hamza Kebiri, Chirine Atat, Vincent Dunet, Mériam Koob, Meritxell Bach Cuadra:
Segmentation of the cortical plate in fetal brain MRI with a topological loss. CoRR abs/2010.12391 (2020) - [i4]Kelly Payette, Priscille de Dumast, Hamza Kebiri, Ivan Ezhov, Johannes C. Paetzold, Suprosanna Shit, Asim Iqbal, Romesa Khan, Raimund Kottke, Patrice Grehten, Hui Ji, Levente Lanczi, Marianna Nagy, Monika Beresova, Thi Dao Nguyen, Giancarlo Natalucci, Theofanis Karayannis, Bjoern H. Menze, Meritxell Bach Cuadra, András Jakab:
A comparison of automatic multi-tissue segmentation methods of the human fetal brain using the FeTA Dataset. CoRR abs/2010.15526 (2020) - [i3]Tommaso Di Noto, Guillaume Marie, Sébastien Tourbier, Yasser Alemán-Gómez, Guillaume Saliou, Meritxell Bach Cuadra, Patric Hagmann, Jonas Richiardi:
An anatomically-informed 3D CNN for brain aneurysm classification with weak labels. CoRR abs/2012.08645 (2020)
2010 – 2019
- 2019
- [c25]Huu-Giao Nguyen, Alessia Pica, Jan Hrbacek, Damien C. Weber, Francesco La Rosa, Ann Schalenbourg, Raphael Sznitman, Meritxell Bach Cuadra:
A novel segmentation framework for uveal melanoma in magnetic resonance imaging based on class activation maps. MIDL 2019: 370-379 - 2018
- [c24]Francesco La Rosa, Mário João Fartaria, Tobias Kober, Jonas Richiardi, Cristina Granziera, Jean-Philippe Thiran, Meritxell Bach Cuadra:
Shallow vs Deep Learning Architectures for White Matter Lesion Segmentation in the Early Stages of Multiple Sclerosis. BrainLes@MICCAI (1) 2018: 142-151 - [c23]Huu-Giao Nguyen, Alessia Pica, Philippe Maeder, Ann Schalenbourg, Marta Peroni, Jan Hrbacek, Damien C. Weber, Meritxell Bach Cuadra, Raphael Sznitman:
Ocular Structures Segmentation from Multi-sequences MRI Using 3D Unet with Fully Connected CRFs. COMPAY/OMIA@MICCAI 2018: 167-175 - [i2]Francesco La Rosa, Mário João Fartaria, Tobias Kober, Jonas Richiardi, Cristina Granziera, Jean-Philippe Thiran, Meritxell Bach Cuadra:
Shallow vs deep learning architectures for white matter lesion segmentation in the early stages of multiple sclerosis. CoRR abs/1809.03185 (2018) - 2017
- [j19]Sébastien Tourbier, Clemente Velasco-Annis, Vahid Taimouri, Patric Hagmann, Reto Meuli, Simon K. Warfield, Meritxell Bach Cuadra, Ali Gholipour:
Automated template-based brain localization and extraction for fetal brain MRI reconstruction. NeuroImage 155: 460-472 (2017) - [c22]Elena Najdenovska, Constantin Tuleasca, João Jorge, José P. Marques, Philippe Maeder, Jean-Philippe Thiran, Marc Levivier, Meritxell Bach Cuadra:
Towards an Automated Segmentation of the Ventro-Intermediate Thalamic Nucleus. CARE/CLIP@MICCAI 2017: 141-150 - [c21]Mário João Fartaria, Alexis Roche, Reto Meuli, Cristina Granziera, Tobias Kober, Meritxell Bach Cuadra:
Segmentation of Cortical and Subcortical Multiple Sclerosis Lesions Based on Constrained Partial Volume Modeling. MICCAI (3) 2017: 142-149 - 2016
- [j18]Oscar Esteban, Emmanuel Caruyer, Alessandro Daducci, Meritxell Bach Cuadra, María J. Ledesma-Carbayo, Andrés Santos:
Diffantom: Whole-Brain Diffusion MRI Phantoms Derived from Real Datasets of the Human Connectome Project. Frontiers Neuroinformatics 10: 4 (2016) - [j17]Oscar Esteban, Dominique Zosso, Alessandro Daducci, Meritxell Bach Cuadra, María J. Ledesma-Carbayo, Jean-Philippe Thiran, Andrés Santos:
Surface-driven registration method for the structure-informed segmentation of diffusion MR images. NeuroImage 139: 450-461 (2016) - 2015
- [j16]Sébastien Tourbier, Xavier Bresson, Patric Hagmann, Jean-Philippe Thiran, Reto Meuli, Meritxell Bach Cuadra:
An efficient total variation algorithm for super-resolution in fetal brain MRI with adaptive regularization. NeuroImage 118: 584-597 (2015) - [j15]Sandro I. De Zanet, Carlos Ciller, Tobias Rudolph, Philippe Maeder, Francis L. Munier, Aubin Balmer, Meritxell Bach Cuadra, Jens Kowal:
Landmark Detection for Fusion of Fundus and MRI Toward a Patient-Specific Multimodal Eye Model. IEEE Trans. Biomed. Eng. 62(2): 532-540 (2015) - [c20]Sébastien Tourbier, Patric Hagmann, Maud Cagneaux, Laurent Guibaud, Subrahmanyam Gorthi, Marie Schaer, Jean-Philippe Thiran, Reto Meuli, Meritxell Bach Cuadra:
Automatic brain extraction in fetal MRI using multi-atlas-based segmentation. Medical Imaging: Image Processing 2015: 94130Y - 2014
- [j14]Oscar Esteban, Gert Wollny, Subrahmanyam Gorthi, María J. Ledesma-Carbayo, Jean-Philippe Thiran, Andrés Santos, Meritxell Bach Cuadra:
MBIS: Multivariate Bayesian Image Segmentation tool. Comput. Methods Programs Biomed. 115(2): 76-94 (2014) - [j13]Sylvia Rueda, Sana Fathima, Caroline L. Knight, Mohammad Yaqub, Aris T. Papageorghiou, Bahbibi Rahmatullah, Alessandro Foi, Matteo Maggioni, Antonietta Pepe, Jussi Tohka, Richard V. Stebbing, John McManigle, Anca Ciurte, Xavier Bresson, Meritxell Bach Cuadra, Changming Sun, Gennady V. Ponomarev, Mikhail S. Gelfand, Marat D. Kazanov, Ching-Wei Wang, Hsiang-Chou Chen, Chun-Wei Peng, Chu-Mei Hung, J. Alison Noble:
Evaluation and Comparison of Current Fetal Ultrasound Image Segmentation Methods for Biometric Measurements: A Grand Challenge. IEEE Trans. Medical Imaging 33(4): 797-813 (2014) - [c19]Oscar Esteban, Alessandro Daducci, Emmanuel Caruyer, Kieran O'Brien, María J. Ledesma-Carbayo, Meritxell Bach Cuadra, Andrés Santos:
Simulation-based evaluation of susceptibility distortion correction methods in diffusion MRI for connectivity analysis. ISBI 2014: 738-741 - [c18]Sébastien Tourbier, Xavier Bresson, Patric Hagmann, Jean-Philippe Thiran, Reto Meuli, Meritxell Bach Cuadra:
Efficient Total Variation Algorithm for Fetal Brain MRI Reconstruction. MICCAI (2) 2014: 252-259 - [i1]Oscar Esteban, Gert Wollny, Subrahmanyam Gorthi, María J. Ledesma-Carbayo, Jean-Philippe Thiran, Andrés Santos, Meritxell Bach Cuadra:
MBIS: Multivariate Bayesian Image Segmentation Tool. CoRR abs/1404.0600 (2014) - 2013
- [j12]Subrahmanyam Gorthi, Meritxell Bach Cuadra, Pierre-Alain Tercier, Abdelkarim Allal, Jean-Philippe Thiran:
Weighted Shape-Based Averaging With Neighborhood Prior Model for Multiple Atlas Fusion-Based Medical Image Segmentation. IEEE Signal Process. Lett. 20(11): 1036-1039 (2013) - 2012
- [c17]Subrahmanyam Gorthi, Meritxell Bach Cuadra, Ulrike Schick, Pierre-Alain Tercier, Abdelkarim Allal, Jean-Philippe Thiran:
Evaluation of atlas fusion strategies for segmentation of head and neck lymph nodes for radiotherapy planning. ISBI 2012: 1276-1279 - 2011
- [j11]Mariano Cabezas, Arnau Oliver, Xavier Lladó, Jordi Freixenet, Meritxell Bach Cuadra:
A review of atlas-based segmentation for magnetic resonance brain images. Comput. Methods Programs Biomed. 104(3): 158- (2011) - [j10]Subrahmanyam Gorthi, Valerie Duay, Xavier Bresson, Meritxell Bach Cuadra, F. Javier Sánchez Castro, Claudio Pollo, Abdelkarim Allal, Jean-Philippe Thiran:
Active deformation fields: Dense deformation field estimation for atlas-based segmentation using the active contour framework. Medical Image Anal. 15(6): 787-800 (2011) - [j9]Alexis Roche, Delphine Ribes, Meritxell Bach Cuadra, Gunnar Krüger:
On the convergence of EM-like algorithms for image segmentation using Markov random fields. Medical Image Anal. 15(6): 830-839 (2011) - [c16]Subrahmanyam Gorthi, Jean-Philippe Thiran, Meritxell Bach Cuadra:
Comparison of energy minimization methods for 3-D brain tissue classification. ICIP 2011: 57-60 - [c15]Francesca Pizzorni Ferrarese, Alessandro Daducci, Meritxell Bach Cuadra, Alia Lemkaddem, Cristina Granziera, Jean-Philippe Thiran, Gloria Menegaz:
Towards a diffusion image processing validation and accuracy prediction framework. ICIP 2011: 2269-2272 - [c14]Anca Ciurte, Nawal Houhou, Sergiu Nedevschi, Alessia Pica, Francis L. Munier, Jean-Philippe Thiran, Xavier Bresson, Meritxell Bach Cuadra:
An efficient segmentation method for ultrasound images based on a semi-supervised approach and patch-based features. ISBI 2011: 969-972
2000 – 2009
- 2009
- [j8]Rubén Cárdenes, Rodrigo de Luis García, Meritxell Bach Cuadra:
A multidimensional segmentation evaluation for medical image data. Comput. Methods Programs Biomed. 96(2): 108-124 (2009) - [j7]Subrahmanyam Gorthi, Valerie Duay, Nawal Houhou, Meritxell Bach Cuadra, Ulrike Schick, Minerva Becker, Abdelkarim Allal, Jean-Philippe Thiran:
Segmentation of Head and Neck Lymph Node Regions for Radiotherapy Planning Using Active Contour-Based Atlas Registration. IEEE J. Sel. Top. Signal Process. 3(1): 135-147 (2009) - 2008
- [j6]Marie Schaer, Meritxell Bach Cuadra, Lucas Tamarit, François Lazeyras, Stephan Eliez, Jean-Philippe Thiran:
A Surface-Based Approach to Quantify Local Cortical Gyrification. IEEE Trans. Medical Imaging 27(2): 161-170 (2008) - [c13]D. Ferrario, Meritxell Bach Cuadra, Marie Schaer, Nawal Houhou, Dominique Zosso, Stephan Eliez, Laurent Guibaud, Jean-Philippe Thiran:
Brain surface segmentation of Magnetic Resonance images of the fetus. EUSIPCO 2008: 1-5 - [c12]X. Pena Pina, Meritxell Bach Cuadra, Nicolas Kunz, Nathalie Just, Rolf Gruetter, Jean-Philippe Thiran:
Fast bias field correction for 9.4 tesla magnetic resonance imaging. EUSIPCO 2008: 1-5 - [c11]Valerie Duay, Xavier Bresson, F. Javier Sánchez Castro, Claudio Pollo, Meritxell Bach Cuadra, Jean-Philippe Thiran:
An Active Contour-Based Atlas Registration Model Applied to Automatic Subthalamic Nucleus Targeting on MRI: Method and Validation. MICCAI (2) 2008: 980-988 - [c10]Dominique Zosso, Benoît Le Callennec, Meritxell Bach Cuadra, Kamiar Aminian, Brigitte M. Jolles, Jean-Philippe Thiran:
Bi-planar 2D-to-3D registration in Fourier domain for stereoscopic x-ray motion tracking. Medical Imaging: Image Processing 2008: 69140I - 2007
- [c9]Rubén Cárdenes, Meritxell Bach, Ying Chi, Ioannis Marras, Rodrigo de Luis García, Mats Anderson, Peter Cashman, Matthieu Bultelle:
Multimodal Evaluation for Medical Image Segmentation. CAIP 2007: 229-236 - [c8]Valerie Duay, Xavier Bresson, Nawal Houhou, Meritxell Bach Cuadra, Jean-Philippe Thiran:
Registration of multiple regions derived from the optical flow model and the active contour framework. EUSIPCO 2007: 282-286 - 2006
- [j5]Meritxell Bach Cuadra, Mathieu De Craene, Valerie Duay, Benoît Macq, Claudio Pollo, Jean-Philippe Thiran:
Dense deformation field estimation for atlas-based segmentation of pathological MR brain images. Comput. Methods Programs Biomed. 84(2-3): 66-75 (2006) - [j4]F. Javier Sánchez Castro, Claudio Pollo, Reto Meuli, Philippe Maeder, Olivier Cuisenaire, Meritxell Bach Cuadra, Jean-Guy Villemure, Jean-Philippe Thiran:
A Cross Validation Study of Deep Brain Stimulation Targeting: From Experts to Atlas-Based, Segmentation-Based and Automatic Registration Algorithms. IEEE Trans. Medical Imaging 25(11): 1440-1450 (2006) - [c7]Valerie Duay, Meritxell Bach Cuadra, Xavier Bresson, Jean-Philippe Thiran:
Dense deformation field estimation for atlas registration using the active contour framework. EUSIPCO 2006: 1-5 - 2005
- [j3]Claudio Pollo, Meritxell Bach Cuadra, Olivier Cuisenaire, Jean-Guy Villemure, Jean-Philippe Thiran:
Segmentation of brain structures in presence of a space-occupying lesion. NeuroImage 24(4): 990-996 (2005) - [j2]Meritxell Bach Cuadra, Leila Cammoun, Torsten Butz, Olivier Cuisenaire, Jean-Philippe Thiran:
Comparison and validation of tissue modelization and statistical classification methods in T1-weighted MR brain images. IEEE Trans. Medical Imaging 24(12): 1548-1565 (2005) - [c6]Xavier Gigandet, Meritxell Bach Cuadra, Abram Pointet, Leila Cammoun, Régis Caloz, Jean-Philippe Thiran:
Region-based satellite image classification: method and validation. ICIP (3) 2005: 832-835 - [c5]F. Javier Sánchez Castro, Claudio Pollo, Reto Meuli, Philippe Maeder, Meritxell Bach Cuadra, Olivier Cuisenaire, Jean-Guy Villemure, Jean-Philippe Thiran:
Cross Validation of Experts Versus Registration Methods for Target Localization in Deep Brain Stimulation. MICCAI 2005: 417-424 - 2004
- [j1]Meritxell Bach Cuadra, Claudio Pollo, Anton Bardera, Olivier Cuisenaire, Jean-Guy Villemure, Jean-Philippe Thiran:
Atlas-based segmentation of pathological MR brain images using a model of lesion growth. IEEE Trans. Medical Imaging 23(10): 1301-1314 (2004) - 2003
- [c4]Meritxell Bach Cuadra, Claudio Pollo, Anton Bardera, Olivier Cuisenaire, Jean-Guy Villemure, Jean-Philippe Thiran:
Atlas-based segmentation of pathological brain MR images. ICIP (1) 2003: 573-576 - 2002
- [c3]Meritxell Bach Cuadra, Bram Platel, Eduardo Solanas, Torsten Butz, Jean-Philippe Thiran:
Validation of Tissue Modelization and Classification Techniques in T1-Weighted MR Brain Images. MICCAI (1) 2002: 290-297 - [c2]Meritxell Bach Cuadra, J. Gomez, Patric Hagmann, Claudio Pollo, Jean-Guy Villemure, Benoit M. Dawant, Jean-Philippe Thiran:
Atlas-Based Segmentation of Pathological Brains Using a Model of Tumor Growth. MICCAI (1) 2002: 380-387 - 2001
- [c1]Meritxell Bach Cuadra, Olivier Cuisenaire, Reto Meuli, Jean-Philippe Thiran:
Automatic segmentation of internal structures of the brain in MR images using a tandem of affine and non-rigid registration of an anatomical brain atlas. ICIP (3) 2001: 1083-1086
Coauthor Index
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