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Journal Articles
- 2022
[j10]Gaia Cantelli
, Alex Bateman, Cath Brooksbank, Anton I. Petrov, Rahuman S. Malik-Sheriff, Michele Ide-Smith, Henning Hermjakob, Paul Flicek, Rolf Apweiler, Ewan Birney, Johanna R. McEntyre:
The European Bioinformatics Institute (EMBL-EBI) in 2021. Nucleic Acids Res. 50(D1): 11-19 (2022)- 2021
- [j9]Franziska Hufsky, Kevin Lamkiewicz, Alexandre Almeida, Abdel Aouacheria, Cecilia N. Arighi, Alex Bateman, Jan Baumbach, Niko Beerenwinkel, Christian Brandt, Marco Cacciabue, Sara Chuguransky, Oliver Drechsel, Robert D. Finn, Adrian Fritz, Stephan Fuchs, Georges Hattab, Anne-Christin Hauschild, Dominik Heider, Marie Hoffmann, Martin Hölzer, Stefan Hoops, Lars Kaderali, Ioanna Kalvari, Max von Kleist, Renó Kmiecinski, Denise Kühnert, Gorka Lasso, Pieter Libin, Markus List, Hannah F. Löchel, Maria Jesus Martin, Roman Martin, Julian O. Matschinske, Alice C. McHardy, Pedro Mendes, Jaina Mistry, Vincent Navratil, Eric P. Nawrocki, Áine Niamh O'toole, Nancy Ontiveros-Palacios, Anton I. Petrov, Guillermo Rangel-Pineros, Nicole Redaschi, Susanne Reimering, Knut Reinert, Alejandro Reyes, Lorna J. Richardson, David L. Robertson, Sepideh Sadegh, Joshua B. Singer, Kristof Theys, Chris Upton, Marius Welzel, Lowri Williams, Manja Marz:
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research. Briefings Bioinform. 22(2): 642-663 (2021) - [j8]Ioanna Kalvari, Eric P. Nawrocki, Nancy Ontiveros-Palacios, Joanna Argasinska, Kevin Lamkiewicz, Manja Marz, Sam Griffiths-Jones, Claire Toffano-Nioche, Daniel Gautheret, Zasha Weinberg, Elena Rivas, Sean R. Eddy, Robert D. Finn, Alex Bateman, Anton I. Petrov:
Rfam 14: expanded coverage of metagenomic, viral and microRNA families. Nucleic Acids Res. 49(Database-Issue): D192-D200 (2021) - [j7]Blake A. Sweeney, Anton I. Petrov, Carlos Eduardo Ribas, Robert D. Finn, Alex Bateman, Maciej Szymanski, Wojciech M. Karlowski, Stefan E. Seemann, Jan Gorodkin, Jamie J. Cannone, Robin Ray Gutell, Simon Kay, Steven J. Marygold, Gilberto dos Santos, Adam Frankish, Jonathan M. Mudge, Ruth Barshir, Simon Fishilevich, Patricia P. Chan, Todd M. Lowe, Ruth L. Seal, Elspeth A. Bruford, Simona Panni, Pablo Porras, Dimitra Karagkouni, Artemis G. Hatzigeorgiou, Lina Ma, Zhang Zhang, Pieter-Jan Volders, Pieter Mestdagh, Sam Griffiths-Jones, Bastian Fromm, Kevin J. Peterson, Ioanna Kalvari, Eric P. Nawrocki, Anton S. Petrov, Shuai Weng, Philia Bouchard-Bourelle, Michelle S. Scott, Lauren M. Lui, David Hoksza, Ruth C. Lovering, Barbara Kramarz, Prita Mani, Sridhar Ramachandran, Zasha Weinberg:
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases. Nucleic Acids Res. 49(Database-Issue): D212-D220 (2021) - 2018
- [j6]Ioanna Kalvari, Joanna Argasinska, Natalia Quinones-Olvera, Eric P. Nawrocki, Elena Rivas, Sean R. Eddy, Alex Bateman, Robert D. Finn, Anton I. Petrov:
Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families. Nucleic Acids Res. 46(Database-Issue): D335-D342 (2018) - 2016
- [j5]James Roll, Craig L. Zirbel, Blake A. Sweeney, Anton I. Petrov, Neocles Leontis:
JAR3D Webserver: Scoring and aligning RNA loop sequences to known 3D motifs. Nucleic Acids Res. 44(Webserver-Issue): W320-W327 (2016) - 2015
- [j4]Jamie J. Cannone, Blake A. Sweeney, Anton I. Petrov, Robin Ray Gutell, Craig L. Zirbel, Neocles Leontis:
R3D-2-MSA: the RNA 3D structure-to-multiple sequence alignment server. Nucleic Acids Res. 43(Webserver-Issue): W15-W23 (2015) - 2014
- [j3]Buvaneswari Coimbatore Narayanan, John D. Westbrook, Saheli Ghosh, Anton I. Petrov, Blake A. Sweeney, Craig L. Zirbel, Neocles Leontis, Helen M. Berman:
The Nucleic Acid Database: new features and capabilities. Nucleic Acids Res. 42(Database-Issue): 114-122 (2014) - 2013
- [j2]Ryan R. Rahrig, Anton I. Petrov, Neocles Leontis, Craig L. Zirbel:
R3D Align web server for global nucleotide to nucleotide alignments of RNA 3D structures. Nucleic Acids Res. 41(Webserver-Issue): 15-21 (2013) - 2011
- [j1]Anton I. Petrov, Craig L. Zirbel, Neocles Leontis:
WebFR3D - a server for finding, aligning and analyzing recurrent RNA 3D motifs. Nucleic Acids Res. 39(Web-Server-Issue): 50-55 (2011)
Informal and Other Publications
- 2023
- [i1]Andrew Green, Carlos Eduardo Ribas, Nancy Ontiveros-Palacios, Anton I. Petrov, Alex Bateman, Blake A. Sweeney:
LitSumm: Large language models for literature summarisation of non-coding RNAs. CoRR abs/2311.03056 (2023)
Coauthor Index
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