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ORCIDPhilip V. Ogren
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2010 – 2019
- 2014
[c17]Steven Bethard, Philip V. Ogren, Lee Becker:
ClearTK 2.0: Design Patterns for Machine Learning in UIMA. LREC 2014: 3289-3293- 2011
- [j6]K. Bretonnel Cohen, Karin Verspoor
, Helen L. Johnson, Christophe Roeder, Philip V. Ogren, William A. Baumgartner Jr., Elizabeth K. White, Hannah J. Tipney, Lawrence Hunter:
High-Precision Biological Event Extraction: Effects of System and of Data. Comput. Intell. 27(4): 681-701 (2011) - 2010
- [j5]Guergana K. Savova, James J. Masanz, Philip V. Ogren, Jiaping Zheng, Sunghwan Sohn, Karin Kipper Schuler, Christopher G. Chute:
Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications. J. Am. Medical Informatics Assoc. 17(5): 507-513 (2010) - [c16]Rodney D. Nielsen, James J. Masanz, Philip V. Ogren, Wayne H. Ward, James H. Martin, Guergana K. Savova, Martha Palmer:
An architecture for complex clinical question answering. IHI 2010: 395-399 - [c15]Philip V. Ogren:
Improving Syntactic Coordination Resolution using Language Modeling. NAACL (Student Research Workshop) 2010: 1-6
2000 – 2009
- 2009
- [c14]K. Bretonnel Cohen, Karin Verspoor, Helen L. Johnson, Christophe Roeder, Philip V. Ogren, William A. Baumgartner Jr., Elizabeth K. White, Lawrence Hunter:
High-precision biological event extraction with a concept recognizer. BioNLP@HLT-NAACL (Shared Task) 2009: 50-58 - 2008
- [j4]Lawrence Hunter, Zhiyong Lu, James Firby, William A. Baumgartner Jr., Helen L. Johnson, Philip V. Ogren, K. Bretonnel Cohen:
OpenDMAP: An open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression. BMC Bioinform. 9 (2008) - [j3]Guergana K. Savova, Philip V. Ogren, Patrick H. Duffy, James D. Buntrock, Christopher G. Chute:
Technical Brief: Mayo Clinic NLP System for Patient Smoking Status Identification. J. Am. Medical Informatics Assoc. 15(1): 25-28 (2008) - [j2]Guergana K. Savova, Anni Coden, Igor L. Sominsky, Rie Johnson, Philip V. Ogren, Piet C. de Groen, Christopher G. Chute:
Word sense disambiguation across two domains: Biomedical literature and clinical notes. J. Biomed. Informatics 41(6): 1088-1100 (2008) - [c13]Philip V. Ogren, Guergana K. Savova, Christopher G. Chute:
Constructing Evaluation Corpora for Automated Clinical Named Entity Recognition. LREC 2008 - [c12]Karin Schuler, Vinod Kaggal, James J. Masanz, Philip V. Ogren, Guergana K. Savova:
System Evaluation on a Named Entity Corpus from Clinical Notes. LREC 2008 - 2006
- [c11]Philip V. Ogren, Guergana Savova, James D. Buntrock, Christopher G. Chute:
Building and Evaluating Annotated Corpora for Medical NLP Systems. AMIA 2006 - [c10]Philip V. Ogren:
Knowtator: A Protégé plug-in for annotated corpus construction. HLT-NAACL 2006 - 2005
- [j1]Shuhei Kinoshita, K. Bretonnel Cohen, Philip V. Ogren, Lawrence Hunter:
BioCreAtIvE Task1A: entity identification with a stochastic tagger. BMC Bioinform. 6(S-1) (2005) - [c9]K. Bretonnel Cohen, Philip V. Ogren, Lynne M. Fox, Lawrence Hunter:
Empirical data on corpus design and usage in biomedical natural language processing. AMIA 2005 - [c8]K. Bretonnel Cohen, Lynne M. Fox, Philip V. Ogren, Lawrence Hunter:
Corpus Design for Biomedical Natural Language Processing. LBLODMBS@IDMB 2005: 38-45 - [c7]Philip V. Ogren, K. Bretonnel Cohen, Lawrence Hunter:
Implications of Compositionality in the Gene Ontology for Its Curation and Usage . Pacific Symposium on Biocomputing 2005 - 2004
- [c6]Philip V. Ogren, K. Bretonnel Cohen, George K. Acquaah-Mensah, Jens Eberlein, Lawrence Hunter:
The Compositional Structure of Gene Ontology Terms. Pacific Symposium on Biocomputing 2004: 214-225 - 2000
- [c5]Peter L. Elkin, Alexander Ruggieri, Larry Bergstrom, Brent A. Bauer, Mark Lee, Philip V. Ogren, Christopher G. Chute:
A randomized controlled trial of concept based indexing of Web page content. AMIA 2000 - [c4]Harold R. Solbrig, Peter L. Elkin, Philip V. Ogren, Christopher G. Chute:
A formal approach to integrating synonyms with a reference terminology. AMIA 2000
1990 – 1999
- 1999
- [c3]Peter L. Elkin, Kent R. Bailey, Philip V. Ogren, Brent A. Bauer, Christopher G. Chute:
A randomized double-blind controlled trial of automated term dissection. AMIA 1999 - [c2]Furman S. McDonald, Christopher G. Chute, Philip V. Ogren, Dietlind Wahner-Roedler, Peter L. Elkin:
A large-scale evaluation of terminology integration characteristics. AMIA 1999 - [c1]Lawrence K. McKnight, Peter L. Elkin, Philip V. Ogren, Christopher G. Chute:
Barriers to the clinical implementation of compositionality. AMIA 1999
Coauthor Index
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