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ORCIDXiaoyu Wang 0016
Person information
- affiliation: Monash University, Department of Biochemistry and Molecular Biology, Monash Biomedicine Discovery Institute, Melbourne, Australia
Other persons with the same name
- Xiaoyu Wang (aka: XiaoYu Wang, Xiao-Yu Wang, Xiao-yu Wang, Xiao Yu Wang) — disambiguation page
- Derek Xiaoyu Wang (aka: Xiaoyu Wang 0001) — University of North Carolina, Charlotte, USA
- Xiaoyu Wang 0002
![[0000-0002-6431-8822]](https://dblp1.uni-trier.de/img/orcid-mark.12x12.png "0000-0002-6431-8822")
— Chinese University of Hong Kong, Shenzhen (CUHK-SZ), Shenzhen, China (and 4 more) - Xiaoyu Wang 0003 — Carleton University, Department of Electronics, Ottawa, ON, Canada (and 1 more)
- Xiaoyu Wang 0004 — Soochow University, School of Computer Science and Technology, Suzhou, China (and 1 more)
- Xiaoyu Wang 0005 — Army Engineering University of PLA, Graduate School, Nanjing, China
- Xiaoyu Wang 0006 — Shanghai University of Electric Power, Shanghai, China (and 1 more)
- Xiaoyu Wang 0007 — Shandong University of Science and Technology, College of Mechanical and Electronic Engineering, Qingdao, China
- Xiaoyu Wang 0008 — Hong Kong University of Science and Technology (HKUST), SAR, Hong Kong
- Xiaoyu Wang 0009 — IMT Atlantique Bretagne Pays de la Loire, Brest, France
- Xiao-Yu Wang 0010 (aka: Xiao Yu Wang 0010, Xiaoyu Wang 0010) — University of Waterloo, Electrical and Computer Engineering, Ontario, Canada
- Xiaoyu Wang 0011 (aka: Xiao-Yu Wang 0011) — Dalian Maritime University, School of Information Science and Technology, China (and 1 more)
- Xiaoyu Wang 0012 — Lanzhou Jiaotong University, School of Electronic and Information Engineering, China
- Xiaoyu Wang 0013 — University of Virginia, UVA, Charles L. Brown Department of Electrical and Computer Engineering, Charlottesville, VA, USA
- Xiaoyu Wang 0014 (aka: XiaoYu Wang 0014) — University of Science and Technology of China, School of Computer Science and Technology, LINKE Lab, Hefei, China (and 1 more)
- Xiaoyu Wang 0015 — New York University, NY, USA
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Journal Articles
- 2025
[j16]Zehua Sun, Jing Xu, Yumeng Zhang, Yiwen Zhang, Zhikang Wang, Xiaoyu Wang, Shanshan Li, Yuming Guo, Hsin Hui Shen, Jiangning Song:
Multimodal geometric learning for antimicrobial peptide identification by leveraging alphafold2-predicted structures and surface features. Briefings Bioinform. 26(3) (2025)- [j15]Tong Pan, Yue Bi, Xiaoyu Wang, Ying Zhang, Geoffrey I. Webb, Robin B. Gasser, Lukasz A. Kurgan, Jiangning Song:
SCREEN: A Graph-based Contrastive Learning Tool to Infer Catalytic Residues and Assess Enzyme Mutations. Genom. Proteom. Bioinform. 22(6) (2025) - [j14]Jiashun Wu, Yan Liu, Ying Zhang, Xiaoyu Wang, He Yan, Yiheng Zhu, Jiangning Song, Dong-Jun Yu:
Identifying Protein-Nucleotide Binding Residues via Grouped Multi-task Learning and Pre-trained Protein Language Models. J. Chem. Inf. Model. 65(2): 1040-1052 (2025) - 2024
- [j13]Xiaoyu Wang, Fuyi Li, Yiwen Zhang, Seiya Imoto, Hsin-Hui Shen, Shanshan Li, Yuming Guo, Jian Yang, Jiangning Song:
Deep learning approaches for non-coding genetic variant effect prediction: current progress and future prospects. Briefings Bioinform. 25(3) (2024) - [j12]Yuchuan Zhang, Zhikang Wang, Fang Ge, Xiaoyu Wang, Yiwen Zhang, Shanshan Li, Yuming Guo, Jiangning Song, Dong-Jun Yu:
MLSNet: a deep learning model for predicting transcription factor binding sites. Briefings Bioinform. 25(6) (2024) - [j11]Yuhan Wang, Zhikang Wang, Xuan Yu, Xiaoyu Wang, Jiangning Song, Dong-Jun Yu, Fang Ge:
MORE: a multi-omics data-driven hypergraph integration network for biomedical data classification and biomarker identification. Briefings Bioinform. 26(1) (2024) - [j10]Xiaoyu Wang, Nitin Patil, Fuyi Li, Zhikang Wang, Haolan Zhan, Daniel Schmidt, Philip Thompson, Yuming Guo, Cornelia B. Landersdorfer, Hsin-Hui Shen, Anton Y. Peleg, Jian Li, Jiangning Song:
PmxPred: A data-driven approach for the identification of active polymyxin analogues against gram-negative bacteria. Comput. Biol. Medicine 168: 107681 (2024) - [j9]Mengmeng Gao, Daokun Zhang, Yi Chen, Yiwen Zhang, Zhikang Wang, Xiaoyu Wang, Shanshan Li, Yuming Guo, Geoffrey I. Webb, Anh T. N. Nguyen, Lauren T. May, Jiangning Song:
GraphormerDTI: A graph transformer-based approach for drug-target interaction prediction. Comput. Biol. Medicine 173: 108339 (2024) - 2023
- [j8]Yan Zhu, Fuyi Li, Xudong Guo, Xiaoyu Wang, Lachlan J. M. Coin, Geoffrey I. Webb, Jiangning Song, Cangzhi Jia:
TIMER is a Siamese neural network-based framework for identifying both general and species-specific bacterial promoters. Briefings Bioinform. 24(4) (2023) - [j7]Yan Cui, Zhikang Wang, Xiaoyu Wang, Yiwen Zhang, Ying Zhang, Tong Pan, Zhe Zhang, Shanshan Li, Yuming Guo, Tatsuya Akutsu, Jiangning Song:
SMG: self-supervised masked graph learning for cancer gene identification. Briefings Bioinform. 24(6) (2023) - [j6]Zhikang Wang, Yue Bi, Tong Pan, Xiaoyu Wang, Chris Bain, Richard Bassed, Seiya Imoto, Jianhua Yao, Roger J. Daly, Jiangning Song:
Targeting tumor heterogeneity: multiplex-detection-based multiple instance learning for whole slide image classification. Bioinform. 39(3) (2023) - 2022
- [j5]Fuyi Li, Shuangyu Dong, André Leier, Meiya Han, Xudong Guo, Jing Xu, Xiaoyu Wang, Shirui Pan, Cangzhi Jia, Yang Zhang, Geoffrey I. Webb, Lachlan J. M. Coin, Chen Li, Jiangning Song:
Positive-unlabeled learning in bioinformatics and computational biology: a brief review. Briefings Bioinform. 23(1) (2022) - [j4]Xiaoyu Wang, Fuyi Li, Jing Xu, Jia Rong, Geoffrey I. Webb, Zongyuan Ge, Jian Li, Jiangning Song:
ASPIRER: a new computational approach for identifying non-classical secreted proteins based on deep learning. Briefings Bioinform. 23(2) (2022) - [j3]Xinxin Peng, Xiaoyu Wang, Yuming Guo, Zongyuan Ge, Fuyi Li, Xin Gao, Jiangning Song:
RBP-TSTL is a two-stage transfer learning framework for genome-scale prediction of RNA-binding proteins. Briefings Bioinform. 23(4) (2022) - [j2]Lin Zhu, Xiaoyu Wang, Fuyi Li, Jiangning Song:
PreAcrs: a machine learning framework for identifying anti-CRISPR proteins. BMC Bioinform. 23(1): 444 (2022) - 2021
- [j1]Ying Zhang, Yan Liu, Jian Xu, Xiaoyu Wang, Xinxin Peng, Jiangning Song, Dong-Jun Yu:
Leveraging the attention mechanism to improve the identification of DNA N6-methyladenine sites. Briefings Bioinform. 22(6) (2021)
Conference and Workshop Papers
- 2025
- [c1]Rong Han, Xiaohong Liu, Tong Pan, Jing Xu, Xiaoyu Wang, Wuyang Lan, Zhenyu Li, Zixuan Wang, Jiangning Song, Guangyu Wang, Ting Chen:
CoPRA: Bridging Cross-domain Pretrained Sequence Models with Complex Structures for Protein-RNA Binding Affinity Prediction. AAAI 2025: 246-254
Informal and Other Publications
- 2024
- [i2]Rong Han, Xiaohong Liu, Tong Pan, Jing Xu, Xiaoyu Wang, Wuyang Lan, Zhenyu Li, Zixuan Wang, Jiangning Song, Guangyu Wang, Ting Chen:
CoPRA: Bridging Cross-domain Pretrained Sequence Models with Complex Structures for Protein-RNA Binding Affinity Prediction. CoRR abs/2409.03773 (2024) - 2022
- [i1]Zhikang Wang, Yue Bi, Tong Pan, Xiaoyu Wang, Chris Bain, Richard Bassed, Seiya Imoto, Jianhua Yao, Jiangning Song:
Multiplex-detection Based Multiple Instance Learning Network for Whole Slide Image Classification. CoRR abs/2208.03526 (2022)
Coauthor Index
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